Wall clock time and date at job start Tue Mar 31 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33712 * 126.11991 * 2 1 4 4 H 0.96999 * 124.97587 * 0.03838 * 3 2 1 5 5 N 1.39883 * 110.05045 * 180.02562 * 3 2 1 6 6 C 1.31910 * 109.17718 * 0.02562 * 5 3 2 7 7 N 1.34419 * 134.12291 * 179.97438 * 6 5 3 8 8 C 1.30510 * 121.55487 * 179.68433 * 7 6 5 9 9 C 1.40810 * 122.37813 * 0.59878 * 8 7 6 10 10 C 1.47511 * 119.91914 * 179.70484 * 9 8 7 11 11 O 1.21606 * 120.00414 * 179.72385 * 10 9 8 12 12 N 1.34773 * 120.00067 * 359.73084 * 10 9 8 13 13 C 1.46503 * 120.00325 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47398 * 179.97438 * 13 12 10 15 15 H 1.08994 * 112.84978 * 316.19809 * 14 13 12 16 16 C 1.53780 * 113.61378 * 87.49919 * 14 13 12 17 17 C 1.53782 * 87.07973 * 139.98153 * 16 14 13 18 18 H 1.08998 * 113.69005 * 89.13056 * 17 16 14 19 19 N 1.46504 * 113.61214 * 220.01910 * 17 16 14 20 20 C 1.36943 * 119.99781 * 252.49776 * 19 17 16 21 21 H 1.08002 * 119.99788 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99622 * 180.27904 * 20 19 17 23 23 N 1.31614 * 120.00467 * 359.72375 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 179.72266 * 22 20 19 25 25 H 1.48496 * 109.47031 * 59.99836 * 24 22 20 26 26 H 1.48497 * 109.47267 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47169 * 300.00118 * 24 22 20 28 28 C 1.53777 * 87.07986 * 334.56578 * 17 16 14 29 29 C 1.38876 * 120.16442 * 359.43508 * 9 8 7 30 30 C 1.38536 * 126.12319 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47025 * 269.99077 * 1 2 3 32 32 H 1.08996 * 109.47378 * 29.99508 * 1 2 3 33 33 H 1.09002 * 109.47214 * 149.99575 * 1 2 3 34 34 H 1.08001 * 118.80963 * 180.29139 * 8 7 6 35 35 H 0.97004 * 120.00034 * 359.97438 * 12 10 9 36 36 H 1.08995 * 109.47501 * 59.99426 * 13 12 10 37 37 H 1.09012 * 109.46714 * 299.99845 * 13 12 10 38 38 H 1.09007 * 113.61589 * 25.43254 * 16 14 13 39 39 H 1.08995 * 113.61560 * 254.53038 * 16 14 13 40 40 H 0.97000 * 120.00410 * 72.50101 * 19 17 16 41 41 H 0.96995 * 120.00147 * 180.02562 * 23 22 20 42 42 H 1.09003 * 113.60950 * 139.98212 * 28 17 16 43 43 H 1.09001 * 113.61444 * 270.88186 * 28 17 16 44 44 H 1.08003 * 121.05061 * 180.27249 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0801 0.0000 4 1 1.9810 1.9978 0.0005 5 7 3.6394 0.6929 -0.0006 6 6 3.7109 -0.6243 -0.0015 7 7 4.7251 -1.5064 -0.0028 8 6 4.5107 -2.7937 0.0026 9 6 3.2137 -3.3421 -0.0023 10 6 3.0340 -4.8062 -0.0024 11 8 1.9146 -5.2815 -0.0016 12 7 4.1103 -5.6173 -0.0032 13 6 3.9319 -7.0714 -0.0027 14 6 5.3015 -7.7534 -0.0044 15 1 6.0025 -7.2933 -0.7007 16 6 5.8822 -7.9727 1.4025 17 6 6.3678 -9.3436 0.9028 18 1 7.3615 -9.3198 0.4554 19 7 6.2134 -10.4160 1.8889 20 6 7.3149 -10.9300 2.5196 21 1 8.2975 -10.5450 2.2897 22 6 7.1692 -11.9500 3.4497 23 7 5.9719 -12.4196 3.7294 24 14 8.6725 -12.6565 4.3043 25 1 9.3650 -11.5803 5.0576 26 1 8.2507 -13.7256 5.2447 27 1 9.5970 -13.2247 3.2905 28 6 5.2270 -9.2845 -0.1267 29 6 2.1034 -2.5080 -0.0015 30 6 2.3237 -1.1190 -0.0005 31 1 -0.3633 -0.0002 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3634 -0.8900 -0.5139 34 1 5.3586 -3.4626 0.0061 35 1 5.0033 -5.2383 -0.0041 36 1 3.3767 -7.3697 -0.8919 37 1 3.3784 -7.3692 0.8880 38 1 5.1239 -8.0360 2.1830 39 1 6.6919 -7.2872 1.6524 40 1 5.3310 -10.7620 2.0951 41 1 5.8701 -13.1321 4.3796 42 1 5.5079 -9.6580 -1.1114 43 1 4.2896 -9.7065 0.2357 44 1 1.1022 -2.9131 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086273235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:19 Heat of formation + Delta-G solvation = 98.252927 kcal Electronic energy + Delta-G solvation = -26141.690667 eV Core-core repulsion = 22289.557781 eV Total energy + Delta-G solvation = -3852.132886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.10183 -40.06007 -38.63356 -37.91950 -34.77033 -33.94330 -33.30062 -32.02740 -31.45735 -30.21128 -28.32481 -27.04362 -25.22179 -25.05804 -24.09382 -23.40629 -21.09993 -21.06228 -20.51636 -19.12296 -18.53133 -18.06862 -17.30604 -16.99955 -16.34352 -16.09719 -15.51477 -15.29829 -15.07719 -14.63182 -14.58276 -13.96933 -13.87571 -13.82657 -13.54049 -13.40724 -13.33161 -13.04232 -12.90364 -12.72453 -11.88960 -11.79203 -11.63350 -11.37558 -11.21730 -11.02546 -10.80736 -10.54432 -10.35313 -10.16273 -10.00865 -9.80329 -9.62083 -9.54724 -9.44553 -9.06417 -8.84277 -8.46212 -6.94098 -5.76172 -3.04901 -0.15651 0.81328 1.72014 1.89874 2.79267 3.03182 3.41618 3.45081 3.49552 3.50522 3.58722 3.66586 4.09981 4.30892 4.40469 4.60276 4.61298 4.66442 4.73838 4.83212 4.99581 5.05051 5.06584 5.17828 5.25721 5.48914 5.53308 5.64216 5.66160 5.84777 5.88196 5.95630 5.98441 6.11983 6.26788 6.33669 6.36122 6.38968 6.46468 6.62871 6.85519 6.87697 7.14270 7.42636 7.55906 7.70773 8.12606 8.42501 9.53451 10.12039 10.46086 11.46125 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.001828 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.894811 B =15310.260685 C =15687.619610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.155 3.845 3 N -0.410 5.410 4 H 0.448 0.552 5 N -0.291 5.291 6 C 0.285 3.715 7 N -0.475 5.475 8 C 0.224 3.776 9 C -0.243 4.243 10 C 0.568 3.432 11 O -0.544 6.544 12 N -0.720 5.720 13 C 0.133 3.867 14 C -0.128 4.128 15 H 0.089 0.911 16 C -0.161 4.161 17 C 0.165 3.835 18 H 0.075 0.925 19 N -0.713 5.713 20 C -0.244 4.244 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.142 4.142 29 C 0.090 3.910 30 C -0.274 4.274 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.168 0.832 35 H 0.399 0.601 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.268 27.722 -10.985 32.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.012 3.988 3 N -0.110 5.110 4 H 0.294 0.706 5 N -0.121 5.121 6 C 0.022 3.978 7 N -0.187 5.187 8 C 0.037 3.963 9 C -0.250 4.250 10 C 0.354 3.646 11 O -0.423 6.423 12 N -0.371 5.371 13 C 0.010 3.990 14 C -0.147 4.147 15 H 0.107 0.893 16 C -0.202 4.202 17 C 0.053 3.947 18 H 0.093 0.907 19 N -0.351 5.351 20 C -0.375 4.375 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.182 4.182 29 C 0.061 3.939 30 C -0.286 4.286 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.184 0.816 35 H 0.234 0.766 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.339 28.917 -10.894 32.916 hybrid contribution -0.419 -0.797 0.629 1.099 sum -11.758 28.120 -10.265 32.161 Atomic orbital electron populations 1.20726 0.85356 1.05326 1.04817 1.21465 0.94770 0.87126 0.95458 1.46436 1.04571 1.09044 1.50972 0.70590 1.77798 0.91753 1.10350 1.32204 1.21419 0.88669 0.91484 0.96237 1.67367 1.31511 1.01748 1.18032 1.23056 0.95385 0.90449 0.87378 1.20517 0.94953 0.94404 1.15164 1.17824 0.84817 0.85502 0.76422 1.90787 1.24040 1.76828 1.50619 1.45952 1.08703 1.07564 1.74856 1.21479 0.97647 0.77557 1.02327 1.22655 0.95302 0.96840 0.99952 0.89252 1.23956 1.00417 1.01252 0.94610 1.21528 0.95682 0.87817 0.89674 0.90663 1.42408 1.07379 1.40109 1.45162 1.19265 0.87785 1.13786 1.16707 0.91140 1.24767 0.96590 0.99356 1.00232 1.69646 1.20623 1.30501 1.37276 0.86266 0.82148 0.78537 0.79218 1.21252 1.21718 1.21256 1.23445 1.01394 0.92952 1.00389 1.21115 0.99531 0.89205 0.84054 1.20050 0.94818 0.94296 1.19400 0.88543 0.89810 0.88350 0.81558 0.76561 0.91540 0.90987 0.90309 0.92682 0.78071 0.93423 0.92002 0.90099 0.83231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.15 10.45 36.01 0.38 0.23 16 2 C 0.16 0.90 7.28 -81.66 -0.59 0.30 16 3 N -0.41 -2.50 7.16 33.86 0.24 -2.25 16 4 H 0.45 0.85 8.96 -182.76 -1.64 -0.79 16 5 N -0.29 -3.25 12.68 31.97 0.41 -2.84 16 6 C 0.28 3.44 8.60 -156.39 -1.35 2.09 16 7 N -0.47 -5.87 10.42 -11.02 -0.11 -5.98 16 8 C 0.22 2.22 10.64 -17.14 -0.18 2.03 16 9 C -0.24 -2.53 5.88 -104.91 -0.62 -3.15 16 10 C 0.57 6.92 7.76 -12.48 -0.10 6.82 16 11 O -0.54 -8.44 16.34 5.27 0.09 -8.35 16 12 N -0.72 -7.71 5.50 -61.35 -0.34 -8.05 16 13 C 0.13 1.65 5.51 -4.04 -0.02 1.63 16 14 C -0.13 -1.63 3.75 -89.81 -0.34 -1.97 16 15 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.16 -2.59 7.43 -25.92 -0.19 -2.78 16 17 C 0.17 3.13 4.48 -67.12 -0.30 2.83 16 18 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 19 N -0.71 -17.64 5.40 -52.64 -0.28 -17.92 16 20 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 24 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 28 C -0.14 -2.19 7.39 -25.92 -0.19 -2.38 16 29 C 0.09 0.85 9.75 -38.44 -0.37 0.47 16 30 C -0.27 -2.55 6.26 -105.21 -0.66 -3.21 16 31 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 32 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 33 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.17 1.12 6.30 -52.49 -0.33 0.79 16 35 H 0.40 3.24 6.44 -40.82 -0.26 2.98 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.03 7.85 -51.92 -0.41 0.62 16 38 H 0.08 1.40 7.90 -51.93 -0.41 0.99 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.39 10.16 7.92 -40.82 -0.32 9.84 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 44 H 0.15 1.19 7.67 -52.48 -0.40 0.79 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -37.19 374.45 -10.56 -47.75 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.12 Total: 6.55 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -4.78 Total: -4.44 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: 0.64 Total: -64.46 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.19 -10.56 -47.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086273235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.004 kcal (2) G-P(sol) polarization free energy of solvation -37.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds