Wall clock time and date at job start Tue Mar 31 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33712 * 126.11991 * 2 1 4 4 H 0.96999 * 124.97587 * 0.03838 * 3 2 1 5 5 N 1.39883 * 110.05045 * 180.02562 * 3 2 1 6 6 C 1.31910 * 109.17718 * 0.02562 * 5 3 2 7 7 N 1.34419 * 134.12291 * 179.97438 * 6 5 3 8 8 C 1.30510 * 121.55487 * 179.68433 * 7 6 5 9 9 C 1.40810 * 122.37813 * 0.59878 * 8 7 6 10 10 C 1.47511 * 119.91914 * 179.70484 * 9 8 7 11 11 O 1.21606 * 120.00414 * 179.72385 * 10 9 8 12 12 N 1.34773 * 120.00067 * 359.73084 * 10 9 8 13 13 C 1.46503 * 120.00325 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47398 * 179.97438 * 13 12 10 15 15 H 1.08994 * 112.84978 * 316.19809 * 14 13 12 16 16 C 1.53780 * 113.61378 * 87.49919 * 14 13 12 17 17 C 1.53782 * 87.07973 * 139.98153 * 16 14 13 18 18 H 1.08998 * 113.69005 * 89.13056 * 17 16 14 19 19 N 1.46504 * 113.61214 * 220.01910 * 17 16 14 20 20 C 1.36943 * 119.99781 * 252.49776 * 19 17 16 21 21 H 1.08002 * 119.99788 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99622 * 180.27904 * 20 19 17 23 23 N 1.31614 * 120.00467 * 359.72375 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 179.72266 * 22 20 19 25 25 H 1.48496 * 109.47031 * 59.99836 * 24 22 20 26 26 H 1.48497 * 109.47267 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47169 * 300.00118 * 24 22 20 28 28 C 1.53777 * 87.07986 * 334.56578 * 17 16 14 29 29 C 1.38876 * 120.16442 * 359.43508 * 9 8 7 30 30 C 1.38536 * 126.12319 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47025 * 269.99077 * 1 2 3 32 32 H 1.08996 * 109.47378 * 29.99508 * 1 2 3 33 33 H 1.09002 * 109.47214 * 149.99575 * 1 2 3 34 34 H 1.08001 * 118.80963 * 180.29139 * 8 7 6 35 35 H 0.97004 * 120.00034 * 359.97438 * 12 10 9 36 36 H 1.08995 * 109.47501 * 59.99426 * 13 12 10 37 37 H 1.09012 * 109.46714 * 299.99845 * 13 12 10 38 38 H 1.09007 * 113.61589 * 25.43254 * 16 14 13 39 39 H 1.08995 * 113.61560 * 254.53038 * 16 14 13 40 40 H 0.97000 * 120.00410 * 72.50101 * 19 17 16 41 41 H 0.96995 * 120.00147 * 180.02562 * 23 22 20 42 42 H 1.09003 * 113.60950 * 139.98212 * 28 17 16 43 43 H 1.09001 * 113.61444 * 270.88186 * 28 17 16 44 44 H 1.08003 * 121.05061 * 180.27249 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0801 0.0000 4 1 1.9810 1.9978 0.0005 5 7 3.6394 0.6929 -0.0006 6 6 3.7109 -0.6243 -0.0015 7 7 4.7251 -1.5064 -0.0028 8 6 4.5107 -2.7937 0.0026 9 6 3.2137 -3.3421 -0.0023 10 6 3.0340 -4.8062 -0.0024 11 8 1.9146 -5.2815 -0.0016 12 7 4.1103 -5.6173 -0.0032 13 6 3.9319 -7.0714 -0.0027 14 6 5.3015 -7.7534 -0.0044 15 1 6.0025 -7.2933 -0.7007 16 6 5.8822 -7.9727 1.4025 17 6 6.3678 -9.3436 0.9028 18 1 7.3615 -9.3198 0.4554 19 7 6.2134 -10.4160 1.8889 20 6 7.3149 -10.9300 2.5196 21 1 8.2975 -10.5450 2.2897 22 6 7.1692 -11.9500 3.4497 23 7 5.9719 -12.4196 3.7294 24 14 8.6725 -12.6565 4.3043 25 1 9.3650 -11.5803 5.0576 26 1 8.2507 -13.7256 5.2447 27 1 9.5970 -13.2247 3.2905 28 6 5.2270 -9.2845 -0.1267 29 6 2.1034 -2.5080 -0.0015 30 6 2.3237 -1.1190 -0.0005 31 1 -0.3633 -0.0002 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3634 -0.8900 -0.5139 34 1 5.3586 -3.4626 0.0061 35 1 5.0033 -5.2383 -0.0041 36 1 3.3767 -7.3697 -0.8919 37 1 3.3784 -7.3692 0.8880 38 1 5.1239 -8.0360 2.1830 39 1 6.6919 -7.2872 1.6524 40 1 5.3310 -10.7620 2.0951 41 1 5.8701 -13.1321 4.3796 42 1 5.5079 -9.6580 -1.1114 43 1 4.2896 -9.7065 0.2357 44 1 1.1022 -2.9131 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086273235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:18 Heat of formation + Delta-G solvation = 70.913725 kcal Electronic energy + Delta-G solvation = -26142.876184 eV Core-core repulsion = 22289.557781 eV Total energy + Delta-G solvation = -3853.318403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.73911 -40.99961 -39.84628 -38.77114 -36.04997 -35.00911 -34.56299 -32.65411 -32.38589 -31.81108 -29.14510 -27.92748 -26.38867 -26.02987 -25.66370 -24.41508 -22.39910 -21.94440 -21.22966 -20.45315 -19.24094 -19.03526 -18.76814 -18.00508 -17.21991 -16.74059 -16.69496 -16.39141 -16.17544 -15.89145 -15.73951 -15.20977 -14.98127 -14.59028 -14.43873 -14.27643 -14.19876 -14.12909 -13.39361 -13.28694 -13.24722 -13.16572 -12.97900 -12.85542 -12.58484 -12.30188 -12.22275 -12.04503 -11.71852 -11.58034 -11.50131 -11.17993 -10.95551 -10.76131 -10.31107 -10.28439 -10.04905 -9.16321 -8.93312 -7.91374 -5.19161 -0.76309 0.05075 1.09763 1.43301 1.49106 1.52020 1.57956 1.90639 2.14523 2.59434 2.78158 2.80760 3.15244 3.40465 3.60414 3.69721 3.75992 3.81647 3.84124 3.87253 4.01492 4.09063 4.32395 4.33444 4.42363 4.50400 4.64050 4.66597 4.71086 4.84139 4.95341 4.98450 5.05100 5.06190 5.09973 5.13035 5.29013 5.30807 5.41847 5.47813 5.57523 5.79902 5.99577 6.21320 6.31106 6.56647 6.84528 7.23083 7.36565 8.16146 8.37323 9.31906 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.001828 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.894811 B =15310.260685 C =15687.619610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.189 3.811 3 N -0.395 5.395 4 H 0.466 0.534 5 N -0.335 5.335 6 C 0.259 3.741 7 N -0.511 5.511 8 C 0.229 3.771 9 C -0.262 4.262 10 C 0.572 3.428 11 O -0.583 6.583 12 N -0.709 5.709 13 C 0.139 3.861 14 C -0.096 4.096 15 H 0.123 0.877 16 C -0.154 4.154 17 C 0.141 3.859 18 H 0.080 0.920 19 N -0.730 5.730 20 C -0.242 4.242 21 H 0.079 0.921 22 C -0.081 4.081 23 N -0.972 5.972 24 Si 0.973 3.027 25 H -0.279 1.279 26 H -0.298 1.298 27 H -0.277 1.277 28 C -0.136 4.136 29 C 0.101 3.899 30 C -0.299 4.299 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.192 0.808 35 H 0.413 0.587 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.372 0.628 41 H 0.250 0.750 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.672 29.881 -12.134 34.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.044 3.956 3 N -0.098 5.098 4 H 0.316 0.684 5 N -0.166 5.166 6 C -0.003 4.003 7 N -0.224 5.224 8 C 0.044 3.956 9 C -0.270 4.270 10 C 0.360 3.640 11 O -0.464 6.464 12 N -0.361 5.361 13 C 0.016 3.984 14 C -0.115 4.115 15 H 0.141 0.859 16 C -0.195 4.195 17 C 0.031 3.969 18 H 0.098 0.902 19 N -0.367 5.367 20 C -0.374 4.374 21 H 0.097 0.903 22 C -0.272 4.272 23 N -0.623 5.623 24 Si 0.802 3.198 25 H -0.205 1.205 26 H -0.225 1.225 27 H -0.203 1.203 28 C -0.175 4.175 29 C 0.072 3.928 30 C -0.310 4.310 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.209 0.791 35 H 0.251 0.749 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.204 0.796 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.691 31.160 -12.087 35.408 hybrid contribution -0.411 -1.294 0.929 1.645 sum -12.101 29.866 -11.158 34.101 Atomic orbital electron populations 1.21011 0.81591 1.07201 1.06415 1.22136 0.96488 0.85678 0.91298 1.46424 1.03245 1.10244 1.49845 0.68412 1.77674 0.94519 1.10350 1.34073 1.21715 0.89950 0.91991 0.96666 1.67344 1.32508 1.02584 1.19976 1.23378 0.95986 0.90153 0.86078 1.20369 0.95705 0.93278 1.17633 1.18021 0.84345 0.86170 0.75474 1.90764 1.25462 1.77552 1.52643 1.45793 1.09338 1.06727 1.74255 1.21267 0.97085 0.78531 1.01539 1.22487 0.95838 0.95125 0.98045 0.85861 1.23736 1.00271 0.99457 0.96034 1.21986 0.97352 0.87567 0.89948 0.90191 1.42630 1.06027 1.41622 1.46456 1.19706 0.88877 1.12943 1.15845 0.90342 1.25584 0.99245 1.00572 1.01839 1.69812 1.22678 1.31383 1.38388 0.85221 0.78971 0.77583 0.78055 1.20468 1.22475 1.20295 1.23320 0.99208 0.95121 0.99876 1.21318 0.99912 0.89345 0.82188 1.20275 0.94453 0.95072 1.21239 0.86730 0.86779 0.87644 0.79142 0.74858 0.91155 0.93159 0.92550 0.91365 0.79646 0.94168 0.90314 0.91403 0.81960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.11 10.45 71.24 0.74 0.86 16 2 C 0.19 1.73 7.28 42.34 0.31 2.04 16 3 N -0.40 -4.10 7.16 -46.78 -0.34 -4.43 16 4 H 0.47 0.67 8.96 -213.46 -1.91 -1.24 16 5 N -0.34 -7.39 12.68 -52.75 -0.67 -8.06 16 6 C 0.26 6.24 8.60 136.87 1.18 7.42 16 7 N -0.51 -12.69 10.42 -188.78 -1.97 -14.66 16 8 C 0.23 4.40 10.64 85.52 0.91 5.31 16 9 C -0.26 -5.28 5.88 -20.05 -0.12 -5.40 16 10 C 0.57 13.48 7.76 86.69 0.67 14.15 16 11 O -0.58 -17.89 16.34 -4.05 -0.07 -17.96 16 12 N -0.71 -14.08 5.50 -466.27 -2.57 -16.65 16 13 C 0.14 3.27 5.51 86.38 0.48 3.75 16 14 C -0.10 -2.22 3.75 -10.27 -0.04 -2.26 16 15 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 16 C -0.15 -4.77 7.43 31.12 0.23 -4.54 16 17 C 0.14 5.23 4.48 45.52 0.20 5.43 16 18 H 0.08 2.88 8.10 -2.39 -0.02 2.87 16 19 N -0.73 -36.61 5.40 -320.44 -1.73 -38.34 16 20 C -0.24 -13.39 9.97 84.03 0.84 -12.55 16 21 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 22 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 23 N -0.97 -60.19 13.06 21.65 0.28 -59.91 16 24 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 27 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 28 C -0.14 -4.01 7.39 31.12 0.23 -3.78 16 29 C 0.10 1.81 9.75 23.01 0.22 2.03 16 30 C -0.30 -5.22 6.26 -20.25 -0.13 -5.35 16 31 H 0.11 -0.37 8.14 -2.38 -0.02 -0.39 16 32 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 33 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.19 2.31 6.30 -2.91 -0.02 2.29 16 35 H 0.41 5.72 6.44 -92.71 -0.60 5.13 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.43 7.85 -2.38 -0.02 1.41 16 38 H 0.06 2.02 7.90 -2.38 -0.02 2.00 16 39 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.37 20.27 7.92 -92.71 -0.73 19.54 16 41 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 43 H 0.07 2.21 8.08 -2.39 -0.02 2.19 16 44 H 0.16 2.37 7.67 -2.91 -0.02 2.35 16 Total: -1.00 -84.07 374.45 -1.00 -85.07 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -2.17 Total: 23.62 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 6.20 Total: 2.92 kcal Atomic # 7 Polarization: -135.06 SS G_CDS: -6.99 Total: -142.05 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.07 Total: -17.96 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -84.07 -1.00 -85.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086273235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.980 kcal (2) G-P(sol) polarization free energy of solvation -84.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds