Wall clock time and date at job start Tue Mar 31 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30705 * 125.63564 * 2 1 4 4 N 1.39900 * 109.52085 * 180.02562 * 3 2 1 5 5 C 1.36315 * 132.16081 * 180.02562 * 4 3 2 6 6 C 1.35754 * 119.15769 * 179.97438 * 5 4 3 7 7 C 1.39960 * 119.35626 * 0.02562 * 6 5 4 8 8 N 1.31498 * 120.10717 * 0.02562 * 7 6 5 9 9 C 1.33388 * 120.85340 * 359.67620 * 8 7 6 10 10 C 1.40642 * 125.64245 * 180.02562 * 2 1 3 11 11 C 1.46579 * 126.53635 * 359.94191 * 10 2 1 12 12 O 1.21721 * 120.00279 * 90.02701 * 11 10 2 13 13 N 1.34779 * 120.00186 * 270.02333 * 11 10 2 14 14 C 1.46509 * 120.00062 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47069 * 180.02562 * 14 13 11 16 16 H 1.09008 * 112.84730 * 316.19785 * 15 14 13 17 17 C 1.53951 * 113.74216 * 87.40157 * 15 14 13 18 18 C 1.53787 * 87.01766 * 139.94603 * 17 15 14 19 19 H 1.08995 * 113.61526 * 89.22714 * 18 17 15 20 20 N 1.46504 * 113.61535 * 220.05095 * 18 17 15 21 21 C 1.36934 * 119.99567 * 254.13621 * 20 18 17 22 22 H 1.08001 * 120.00537 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99798 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00134 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00229 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46986 * 270.00112 * 25 23 21 27 27 H 1.48496 * 109.47029 * 30.00128 * 25 23 21 28 28 H 1.48499 * 109.47352 * 149.99958 * 25 23 21 29 29 C 1.53780 * 113.61416 * 185.00339 * 15 14 13 30 30 H 1.09001 * 109.47148 * 269.95559 * 1 2 3 31 31 H 1.08997 * 109.47278 * 29.96408 * 1 2 3 32 32 H 1.08999 * 109.46960 * 149.96429 * 1 2 3 33 33 H 1.07998 * 120.41916 * 359.97438 * 5 4 3 34 34 H 1.08009 * 120.32127 * 180.02562 * 6 5 4 35 35 H 1.07999 * 119.95117 * 179.97438 * 7 6 5 36 36 H 0.97001 * 120.00097 * 0.02562 * 13 11 10 37 37 H 1.08994 * 109.46860 * 59.99969 * 14 13 11 38 38 H 1.08999 * 109.46977 * 300.00104 * 14 13 11 39 39 H 1.08995 * 113.61543 * 25.42706 * 17 15 14 40 40 H 1.09003 * 113.66594 * 254.46735 * 17 15 14 41 41 H 0.97000 * 119.99825 * 74.12801 * 20 18 17 42 42 H 0.97005 * 119.99717 * 0.02562 * 24 23 21 43 43 H 1.09002 * 113.61740 * 105.38443 * 29 15 14 44 44 H 1.09003 * 113.68981 * 334.49394 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2685 1.0623 0.0000 4 7 3.6125 0.6740 -0.0006 5 6 4.7720 1.3908 -0.0004 6 6 5.9580 0.7302 -0.0006 7 6 5.9638 -0.6694 -0.0016 8 7 4.8290 -1.3338 -0.0028 9 6 3.6601 -0.6911 0.0034 10 6 2.3265 -1.1430 -0.0005 11 6 1.8779 -2.5384 0.0001 12 8 1.6912 -3.1182 -1.0538 13 7 1.6722 -3.1797 1.1675 14 6 1.2232 -4.5743 1.1681 15 6 1.0673 -5.0593 2.6107 16 1 1.8955 -4.7558 3.2512 17 6 -0.3175 -4.7671 3.2166 18 6 -0.2393 -6.1599 3.8638 19 1 0.2313 -6.1587 4.8470 20 7 -1.5096 -6.8894 3.8420 21 6 -2.2400 -7.0267 4.9922 22 1 -1.8794 -6.5977 5.9154 23 6 -3.4439 -7.7174 4.9714 24 7 -3.8836 -8.2399 3.8462 25 14 -4.4400 -7.9054 6.5405 26 1 -4.0258 -9.1459 7.2441 27 1 -4.2021 -6.7338 7.4212 28 1 -5.8840 -7.9862 6.2035 29 6 0.7159 -6.5521 2.7242 30 1 -0.3633 -0.0008 1.0277 31 1 -0.3634 0.8903 -0.5133 32 1 -0.3633 -0.8897 -0.5144 33 1 4.7474 2.4705 0.0000 34 1 6.8880 1.2794 0.0000 35 1 6.9018 -1.2047 -0.0022 36 1 1.8206 -2.7177 2.0074 37 1 1.9587 -5.1929 0.6539 38 1 0.2644 -4.6475 0.6548 39 1 -1.1089 -4.6751 2.4729 40 1 -0.3159 -3.9498 3.9379 41 1 -1.8333 -7.2749 3.0129 42 1 -3.3662 -8.1426 3.0315 43 1 1.5505 -7.1738 3.0484 44 1 0.2076 -6.9503 1.8460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086275011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:26 Heat of formation + Delta-G solvation = 113.058713 kcal Electronic energy + Delta-G solvation = -26758.750218 eV Core-core repulsion = 22907.259359 eV Total energy + Delta-G solvation = -3851.490859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.87175 -39.66426 -38.72123 -38.18767 -34.67669 -34.65193 -33.49478 -32.59692 -30.46119 -29.78025 -28.79424 -27.11743 -25.13502 -25.04065 -24.20255 -23.43859 -21.72452 -21.12539 -20.38894 -19.16440 -18.57964 -17.92737 -17.41753 -17.13805 -16.72952 -16.08702 -15.92218 -15.23910 -14.98352 -14.61865 -14.56357 -13.93719 -13.76398 -13.73225 -13.69212 -13.44856 -13.35866 -12.87395 -12.80905 -12.73409 -11.94930 -11.87309 -11.70833 -11.56646 -11.47606 -10.92818 -10.73919 -10.37414 -10.34414 -10.27987 -10.00615 -9.90502 -9.88401 -9.81118 -9.10482 -8.95303 -8.84403 -8.37688 -7.01041 -6.09334 -3.08961 -0.05051 0.31783 1.47118 1.96865 2.54359 2.84028 3.25289 3.31093 3.52372 3.57361 3.66412 3.71408 3.82521 4.29323 4.42062 4.63391 4.68274 4.77106 4.91622 4.97083 5.01671 5.08575 5.20842 5.22058 5.27095 5.45479 5.49030 5.51253 5.52031 5.82110 5.83084 5.84900 5.91236 5.97980 6.06173 6.24871 6.27388 6.31844 6.48468 6.56818 6.77946 6.92636 7.06902 7.09137 7.54948 7.82711 8.26548 8.76714 9.24098 10.10446 10.25818 11.38982 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.021949 B = 0.002112 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.353215 B =13256.213136 C =13640.028015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.161 3.839 3 N -0.311 5.311 4 N -0.306 5.306 5 C 0.169 3.831 6 C -0.227 4.227 7 C 0.187 3.813 8 N -0.461 5.461 9 C 0.296 3.704 10 C -0.278 4.278 11 C 0.606 3.394 12 O -0.535 6.535 13 N -0.713 5.713 14 C 0.133 3.867 15 C -0.126 4.126 16 H 0.088 0.912 17 C -0.160 4.160 18 C 0.171 3.829 19 H 0.075 0.925 20 N -0.725 5.725 21 C -0.334 4.334 22 H 0.065 0.935 23 C -0.046 4.046 24 N -0.944 5.944 25 Si 1.083 2.917 26 H -0.295 1.295 27 H -0.295 1.295 28 H -0.288 1.288 29 C -0.143 4.143 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.183 0.817 34 H 0.171 0.829 35 H 0.184 0.816 36 H 0.400 0.600 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.368 0.632 42 H 0.256 0.744 43 H 0.062 0.938 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.297 22.420 -7.505 32.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.000 4.000 3 N -0.135 5.135 4 N -0.074 5.074 5 C 0.033 3.967 6 C -0.251 4.251 7 C 0.004 3.996 8 N -0.172 5.172 9 C 0.066 3.934 10 C -0.294 4.294 11 C 0.390 3.610 12 O -0.412 6.412 13 N -0.364 5.364 14 C 0.010 3.990 15 C -0.145 4.145 16 H 0.106 0.894 17 C -0.201 4.201 18 C 0.059 3.941 19 H 0.093 0.907 20 N -0.364 5.364 21 C -0.465 4.465 22 H 0.083 0.917 23 C -0.244 4.244 24 N -0.589 5.589 25 Si 0.914 3.086 26 H -0.223 1.223 27 H -0.222 1.222 28 H -0.214 1.214 29 C -0.182 4.182 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.200 0.800 34 H 0.189 0.811 35 H 0.201 0.799 36 H 0.233 0.767 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.202 0.798 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.442 21.744 -7.389 30.745 hybrid contribution 1.791 1.003 -0.517 2.116 sum 22.232 22.746 -7.907 32.775 Atomic orbital electron populations 1.20447 0.84595 1.04760 1.04434 1.22457 0.97396 0.88206 0.91900 1.77565 0.82293 1.21186 1.32456 1.46864 1.06742 1.07095 1.46746 1.22151 0.81652 0.99667 0.93209 1.21893 0.98207 0.96343 1.08693 1.23541 0.96549 0.91619 0.87931 1.68182 0.96156 1.37370 1.15467 1.20306 0.93696 0.80608 0.98764 1.19302 0.88820 0.95116 1.26146 1.16754 0.76548 0.83836 0.83813 1.90818 1.51362 1.67514 1.31468 1.46011 1.68224 1.14017 1.08125 1.21444 1.00010 0.80468 0.97100 1.22655 0.98990 0.98297 0.94554 0.89368 1.23954 0.94576 1.01240 1.00299 1.21463 0.87029 0.90280 0.95341 0.90704 1.42423 1.20493 1.64237 1.09284 1.20121 1.04046 1.33467 0.88897 0.91696 1.25795 0.96384 0.97840 1.04360 1.70851 1.40881 1.47605 0.99546 0.83195 0.76246 0.75518 0.73664 1.22319 1.22173 1.21385 1.23430 0.99989 0.93900 1.00915 0.88883 0.89597 0.89228 0.79993 0.81120 0.79895 0.76660 0.91621 0.91152 0.90421 0.92717 0.79808 0.93306 0.91926 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.26 36.00 0.37 -0.40 16 2 C 0.16 1.92 7.22 -82.17 -0.59 1.33 16 3 N -0.31 -3.63 12.58 33.80 0.43 -3.20 16 4 N -0.31 -3.16 3.86 -11.97 -0.05 -3.21 16 5 C 0.17 0.94 11.29 -16.45 -0.19 0.75 16 6 C -0.23 -0.76 10.05 -39.83 -0.40 -1.16 16 7 C 0.19 1.07 11.28 -17.05 -0.19 0.87 16 8 N -0.46 -5.04 10.47 -12.00 -0.13 -5.16 16 9 C 0.30 3.66 7.90 -155.83 -1.23 2.43 16 10 C -0.28 -3.77 5.91 -104.66 -0.62 -4.39 16 11 C 0.61 9.24 7.28 -12.90 -0.09 9.14 16 12 O -0.54 -10.17 17.11 5.17 0.09 -10.08 16 13 N -0.71 -9.39 5.55 -61.64 -0.34 -9.73 16 14 C 0.13 1.87 5.52 -4.04 -0.02 1.85 16 15 C -0.13 -1.76 3.75 -89.72 -0.34 -2.09 16 16 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 17 C -0.16 -2.70 7.45 -25.83 -0.19 -2.89 16 18 C 0.17 3.38 4.47 -67.11 -0.30 3.08 16 19 H 0.07 1.49 8.11 -51.93 -0.42 1.07 16 20 N -0.72 -18.27 5.41 -52.63 -0.28 -18.56 16 21 C -0.33 -9.45 9.97 -15.06 -0.15 -9.60 16 22 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 23 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 24 N -0.94 -29.46 13.70 55.49 0.76 -28.70 16 25 Si 1.08 26.13 29.92 -169.99 -5.09 21.04 16 26 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 29 C -0.14 -2.32 7.39 -25.92 -0.19 -2.52 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.88 7.97 -51.93 -0.41 0.47 16 33 H 0.18 0.36 8.06 -52.49 -0.42 -0.06 16 34 H 0.17 -0.15 8.06 -52.48 -0.42 -0.57 16 35 H 0.18 0.34 8.06 -52.49 -0.42 -0.08 16 36 H 0.40 4.49 8.45 -40.82 -0.35 4.15 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 39 H 0.08 1.43 7.91 -51.93 -0.41 1.02 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.37 9.60 6.74 -40.82 -0.28 9.32 16 42 H 0.26 7.87 6.77 -40.82 -0.28 7.59 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -38.64 377.87 -9.13 -47.77 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.98 Total: 9.19 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -4.23 Total: -5.05 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: 0.39 Total: -68.57 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -5.09 Total: 21.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.64 -9.13 -47.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086275011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.826 kcal (2) G-P(sol) polarization free energy of solvation -38.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds