Wall clock time and date at job start Tue Mar 31 2020 05:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30899 * 119.96154 * 2 1 4 4 C 1.34157 * 121.16549 * 180.27012 * 3 2 1 5 5 C 1.38707 * 132.24835 * 179.73552 * 4 3 2 6 6 C 1.38839 * 107.67314 * 180.02562 * 5 4 3 7 7 N 1.31289 * 108.99458 * 0.02562 * 6 5 4 8 8 N 1.37266 * 120.90166 * 359.74827 * 4 3 2 9 9 C 1.36068 * 119.97468 * 359.97438 * 8 4 3 10 10 C 1.38067 * 118.89108 * 359.97438 * 9 8 4 11 11 C 1.47603 * 120.50514 * 179.97438 * 10 9 8 12 12 O 1.21588 * 120.00231 * 173.85163 * 11 10 9 13 13 N 1.34780 * 119.99895 * 353.85065 * 11 10 9 14 14 C 1.46499 * 119.99952 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47026 * 180.02562 * 14 13 11 16 16 H 1.09006 * 112.84894 * 43.80452 * 15 14 13 17 17 C 1.53782 * 113.61422 * 175.00291 * 15 14 13 18 18 C 1.53778 * 87.07761 * 139.98230 * 17 15 14 19 19 H 1.09011 * 113.61267 * 219.93180 * 18 17 15 20 20 N 1.46497 * 113.61629 * 89.11901 * 18 17 15 21 21 C 1.36933 * 120.00453 * 154.99471 * 20 18 17 22 22 H 1.08004 * 120.00042 * 0.02562 * 21 20 18 23 23 C 1.38815 * 120.00583 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99339 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 120.00301 * 180.27553 * 23 21 20 26 26 H 1.48502 * 109.47419 * 179.72901 * 25 23 21 27 27 H 1.48500 * 109.47272 * 299.72947 * 25 23 21 28 28 H 1.48503 * 109.47111 * 59.72781 * 25 23 21 29 29 C 1.53780 * 87.08651 * 334.56570 * 18 17 15 30 30 H 1.08996 * 109.46894 * 263.78777 * 1 2 3 31 31 H 1.08997 * 109.47145 * 23.79327 * 1 2 3 32 32 H 1.09003 * 109.46909 * 143.79267 * 1 2 3 33 33 H 1.07999 * 126.16378 * 0.03909 * 5 4 3 34 34 H 1.08004 * 125.50178 * 180.02562 * 6 5 4 35 35 H 1.08003 * 120.55349 * 179.97438 * 9 8 4 36 36 H 0.97003 * 120.00032 * 0.02562 * 13 11 10 37 37 H 1.09001 * 109.46421 * 60.00399 * 14 13 11 38 38 H 1.08993 * 109.47494 * 300.00530 * 14 13 11 39 39 H 1.09001 * 113.61090 * 25.43319 * 17 15 14 40 40 H 1.08997 * 113.61573 * 254.53160 * 17 15 14 41 41 H 0.97006 * 120.00096 * 334.99581 * 20 18 17 42 42 H 0.97002 * 119.99795 * 179.97438 * 24 23 21 43 43 H 1.08998 * 113.61303 * 139.97834 * 29 18 17 44 44 H 1.08996 * 113.61258 * 270.88500 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1341 0.0000 4 6 3.5020 1.1623 -0.0054 5 6 4.4128 2.2084 -0.0114 6 6 5.6873 1.6576 -0.0158 7 7 5.5871 0.3486 -0.0134 8 7 4.2316 -0.0005 -0.0060 9 6 3.5945 -1.2028 -0.0004 10 6 2.2140 -1.2262 0.0062 11 6 1.4865 -2.5104 0.0117 12 8 0.2765 -2.5232 0.1303 13 7 2.1634 -3.6690 -0.1146 14 6 1.4414 -4.9437 -0.1086 15 6 2.4372 -6.0947 -0.2655 16 1 3.3266 -5.9721 0.3527 17 6 1.7933 -7.4864 -0.1496 18 6 2.7158 -7.9223 -1.3002 19 1 2.2317 -8.5791 -2.0230 20 7 4.0145 -8.4299 -0.8510 21 6 4.7192 -9.3003 -1.6389 22 1 4.3178 -9.6124 -2.5918 23 6 5.9501 -9.7809 -1.2136 24 7 6.4396 -9.4002 -0.0526 25 14 6.9149 -10.9622 -2.2919 26 1 8.1896 -11.3186 -1.6186 27 1 6.1141 -12.1921 -2.5185 28 1 7.2080 -10.3152 -3.5960 29 6 2.7465 -6.4462 -1.7303 30 1 -0.3633 -0.1112 1.0216 31 1 -0.3633 0.9403 -0.4146 32 1 -0.3633 -0.8292 -0.6071 33 1 4.1737 3.2616 -0.0122 34 1 6.6118 2.2159 -0.0205 35 1 4.1592 -2.1234 -0.0012 36 1 3.1288 -3.6589 -0.2089 37 1 0.7306 -4.9625 -0.9348 38 1 0.9055 -5.0533 0.8342 39 1 0.7348 -7.5007 -0.4092 40 1 2.0055 -7.9884 0.7943 41 1 4.3754 -8.1494 0.0046 42 1 7.2996 -9.7363 0.2449 43 1 3.7283 -6.1086 -2.0623 44 1 1.9486 -6.1763 -2.4220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086519115.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:02 Heat of formation + Delta-G solvation = 119.161746 kcal Electronic energy + Delta-G solvation = -26809.459025 eV Core-core repulsion = 22958.232813 eV Total energy + Delta-G solvation = -3851.226212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.74190 -40.31203 -38.82728 -38.00538 -35.28123 -34.42889 -33.28059 -32.38693 -30.59770 -29.86675 -28.40119 -27.35283 -25.17391 -25.03844 -23.80648 -23.00901 -21.94458 -21.69543 -21.20403 -19.02006 -18.65635 -18.05406 -17.27635 -16.75151 -16.60369 -15.94655 -15.64799 -15.50188 -15.00405 -14.56857 -14.52394 -14.29019 -14.02871 -13.91932 -13.63486 -13.32781 -13.20061 -12.96214 -12.57266 -12.30983 -12.10312 -12.00685 -11.70327 -11.67916 -11.48453 -11.11508 -10.87999 -10.58055 -10.50580 -10.25903 -10.16863 -9.90301 -9.84480 -9.75479 -9.58081 -9.21171 -8.94499 -8.33463 -7.06851 -5.86481 -3.15842 -0.10309 0.26510 1.54547 2.06188 2.54682 2.76125 3.11436 3.38563 3.39733 3.43428 3.44130 3.63930 3.70451 4.27497 4.46661 4.50697 4.73819 4.77104 4.92523 4.95512 5.01397 5.12636 5.30940 5.38733 5.38745 5.45084 5.49855 5.55264 5.59383 5.74120 5.82525 5.84825 5.96432 6.03908 6.07613 6.12323 6.20629 6.28915 6.49238 6.65521 6.79521 6.95380 6.96303 7.13875 7.26600 7.63120 7.83705 8.32666 9.43397 10.00195 10.34151 11.35813 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013788 B = 0.002460 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.252815 B =11380.047933 C =13111.235427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.256 3.744 3 N -0.473 5.473 4 C 0.267 3.733 5 C -0.266 4.266 6 C 0.100 3.900 7 N -0.308 5.308 8 N -0.319 5.319 9 C 0.216 3.784 10 C -0.237 4.237 11 C 0.576 3.424 12 O -0.523 6.523 13 N -0.718 5.718 14 C 0.132 3.868 15 C -0.122 4.122 16 H 0.093 0.907 17 C -0.147 4.147 18 C 0.167 3.833 19 H 0.063 0.937 20 N -0.706 5.706 21 C -0.244 4.244 22 H 0.072 0.928 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.909 3.091 26 H -0.291 1.291 27 H -0.285 1.285 28 H -0.285 1.285 29 C -0.170 4.170 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.165 0.835 34 H 0.202 0.798 35 H 0.186 0.814 36 H 0.399 0.601 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.385 0.615 42 H 0.257 0.743 43 H 0.066 0.934 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.029 21.405 1.070 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 N -0.186 5.186 4 C 0.042 3.958 5 C -0.297 4.297 6 C -0.079 4.079 7 N -0.131 5.131 8 N -0.089 5.089 9 C 0.078 3.922 10 C -0.247 4.247 11 C 0.361 3.639 12 O -0.401 6.401 13 N -0.368 5.368 14 C 0.009 3.991 15 C -0.141 4.141 16 H 0.112 0.888 17 C -0.187 4.187 18 C 0.055 3.945 19 H 0.081 0.919 20 N -0.344 5.344 21 C -0.375 4.375 22 H 0.090 0.910 23 C -0.208 4.208 24 N -0.581 5.581 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.212 1.212 28 H -0.212 1.212 29 C -0.211 4.211 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.183 0.817 34 H 0.219 0.781 35 H 0.202 0.798 36 H 0.234 0.766 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.219 0.781 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.291 21.094 1.036 23.072 hybrid contribution 1.478 -0.444 -0.247 1.563 sum -7.813 20.649 0.789 22.092 Atomic orbital electron populations 1.21122 0.85697 1.04735 1.05076 1.22010 0.98260 0.85455 0.85145 1.68117 1.03694 1.28065 1.18714 1.20895 0.88262 0.87021 0.99635 1.21045 0.89558 0.98860 1.20227 1.24008 0.99148 0.90943 0.93815 1.78018 0.88676 1.15616 1.30801 1.47142 1.07965 1.06007 1.47810 1.22561 0.91893 0.88952 0.88828 1.20665 0.91612 0.97264 1.15206 1.17341 0.86941 0.82429 0.77202 1.90770 1.12883 1.86602 1.49831 1.46035 1.11147 1.06177 1.73477 1.21591 0.94749 0.80533 1.02226 1.22747 0.98390 0.93402 0.99555 0.88842 1.23444 0.99228 0.94634 1.01347 1.21050 0.87518 0.91891 0.94047 0.91900 1.42161 1.16988 1.52927 1.22329 1.19238 0.99535 1.18600 1.00174 0.91033 1.24766 0.97953 1.00825 0.97246 1.69645 1.20074 1.48026 1.20310 0.86244 0.79348 0.80906 0.79545 1.21652 1.21154 1.21196 1.23913 1.01066 1.02072 0.94026 0.88822 0.90412 0.87141 0.81736 0.78098 0.79755 0.76569 0.90975 0.91233 0.90340 0.91243 0.78130 0.93341 0.91518 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 8.92 36.01 0.32 -0.65 16 2 C 0.26 2.76 6.87 -81.73 -0.56 2.20 16 3 N -0.47 -5.62 10.37 -8.17 -0.08 -5.71 16 4 C 0.27 3.18 7.91 -155.32 -1.23 1.95 16 5 C -0.27 -2.57 10.91 -39.19 -0.43 -3.00 16 6 C 0.10 0.88 11.94 -17.56 -0.21 0.67 16 7 N -0.31 -3.59 12.65 30.49 0.39 -3.20 16 8 N -0.32 -3.72 3.88 -11.68 -0.05 -3.76 16 9 C 0.22 2.12 10.82 -15.74 -0.17 1.95 16 10 C -0.24 -2.43 5.88 -104.88 -0.62 -3.04 16 11 C 0.58 6.29 7.70 -12.44 -0.10 6.19 16 12 O -0.52 -6.77 13.45 5.29 0.07 -6.70 16 13 N -0.72 -7.21 5.51 -61.33 -0.34 -7.55 16 14 C 0.13 1.47 5.51 -4.04 -0.02 1.45 16 15 C -0.12 -1.61 3.63 -89.80 -0.33 -1.94 16 16 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 17 C -0.15 -2.15 7.39 -25.92 -0.19 -2.34 16 18 C 0.17 3.06 4.56 -67.12 -0.31 2.76 16 19 H 0.06 1.17 8.10 -51.92 -0.42 0.75 16 20 N -0.71 -16.69 5.31 -52.64 -0.28 -16.97 16 21 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 22 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 25 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 C -0.17 -2.58 7.43 -25.92 -0.19 -2.77 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.11 1.06 5.92 -51.93 -0.31 0.76 16 33 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.20 0.90 8.06 -52.48 -0.42 0.47 16 35 H 0.19 1.31 6.49 -52.48 -0.34 0.97 16 36 H 0.40 3.39 6.58 -40.82 -0.27 3.12 16 37 H 0.07 0.82 7.85 -51.93 -0.41 0.42 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.38 9.62 7.90 -40.82 -0.32 9.30 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.07 0.93 7.90 -51.93 -0.41 0.52 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -32.72 370.00 -9.11 -41.83 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -5.83 Total: 9.94 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -4.27 Total: -3.69 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: 0.36 Total: -63.75 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: 0.07 Total: -6.70 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.72 -9.11 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086519115.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.992 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds