Wall clock time and date at job start Tue Mar 31 2020 05:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35348 * 125.69262 * 2 1 4 4 N 1.36164 * 107.14177 * 180.17813 * 3 2 1 5 5 C 1.36225 * 133.92794 * 179.90816 * 4 3 2 6 6 C 1.35477 * 120.52397 * 179.66262 * 5 4 3 7 7 N 1.32692 * 122.11255 * 359.97438 * 6 5 4 8 8 C 1.32299 * 121.19189 * 0.02728 * 7 6 5 9 9 C 1.47792 * 120.59013 * 179.97438 * 8 7 6 10 10 O 1.21564 * 120.00089 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00460 * 359.97438 * 9 8 7 12 12 C 1.46500 * 120.00125 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.46903 * 179.97438 * 12 11 9 14 14 H 1.08998 * 112.84924 * 316.19932 * 13 12 11 15 15 C 1.53786 * 113.61159 * 87.50693 * 13 12 11 16 16 C 1.53777 * 87.07885 * 139.97959 * 15 13 12 17 17 H 1.09000 * 113.61550 * 220.02102 * 16 15 13 18 18 N 1.46501 * 113.69047 * 89.12726 * 16 15 13 19 19 C 1.36934 * 119.99791 * 107.46141 * 18 16 15 20 20 H 1.07995 * 120.00567 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00047 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99942 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00179 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47196 * 60.00103 * 23 21 19 25 25 H 1.48506 * 109.46988 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47136 * 299.99741 * 23 21 19 27 27 C 1.53781 * 113.61169 * 185.00241 * 13 12 11 28 28 C 1.37564 * 106.99255 * 359.62067 * 4 3 2 29 29 N 1.31856 * 108.10720 * 0.23680 * 28 4 3 30 30 H 1.09004 * 109.46997 * 270.26935 * 1 2 3 31 31 H 1.09003 * 109.47387 * 30.26513 * 1 2 3 32 32 H 1.08998 * 109.47179 * 150.27019 * 1 2 3 33 33 H 1.08003 * 126.43042 * 0.10853 * 3 2 1 34 34 H 1.08001 * 119.73495 * 359.68104 * 5 4 3 35 35 H 1.08002 * 118.93955 * 180.02562 * 6 5 4 36 36 H 0.97001 * 119.99766 * 0.02562 * 11 9 8 37 37 H 1.08996 * 109.47476 * 299.99943 * 12 11 9 38 38 H 1.09003 * 109.47042 * 60.00752 * 12 11 9 39 39 H 1.08998 * 113.61236 * 254.53330 * 15 13 12 40 40 H 1.09001 * 113.60749 * 25.43123 * 15 13 12 41 41 H 0.97001 * 119.99914 * 287.46468 * 18 16 15 42 42 H 0.96995 * 120.00266 * 179.97438 * 22 21 19 43 43 H 1.08997 * 113.61488 * 334.56938 * 27 13 12 44 44 H 1.08998 * 113.61020 * 105.38906 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2966 1.0992 0.0000 4 7 3.5875 0.6660 -0.0040 5 6 4.7956 1.2955 -0.0075 6 6 5.9451 0.5785 -0.0044 7 7 5.9488 -0.7484 0.0027 8 6 4.8189 -1.4367 0.0064 9 6 4.8385 -2.9145 0.0137 10 8 3.7939 -3.5362 0.0175 11 7 6.0145 -3.5729 0.0161 12 6 6.0339 -5.0377 0.0238 13 6 7.4831 -5.5286 0.0244 14 1 8.1155 -4.9815 -0.6747 15 6 8.0881 -5.6607 1.4320 16 6 8.7543 -6.9559 0.9386 17 1 8.7482 -7.7584 1.6761 18 7 10.0733 -6.7468 0.3362 19 6 11.2018 -7.1356 1.0072 20 1 11.1196 -7.5966 1.9804 21 6 12.4516 -6.9371 0.4367 22 7 12.5519 -6.3747 -0.7491 23 14 13.9911 -7.4680 1.3518 24 1 13.9389 -8.9310 1.6012 25 1 15.1885 -7.1472 0.5341 26 1 14.0699 -6.7474 2.6478 27 6 7.6160 -7.0564 -0.0905 28 6 3.5502 -0.7091 0.0023 29 7 2.2862 -1.0847 0.0046 30 1 -0.3633 0.0048 1.0277 31 1 -0.3634 0.8876 -0.5179 32 1 -0.3633 -0.8924 -0.5096 33 1 1.9651 2.1271 0.0016 34 1 4.8373 2.3747 -0.0126 35 1 6.8887 1.1039 -0.0068 36 1 6.8481 -3.0768 0.0134 37 1 5.5258 -5.4031 0.9162 38 1 5.5241 -5.4125 -0.8638 39 1 8.7979 -4.8709 1.6780 40 1 7.3452 -5.8220 2.2131 41 1 10.1471 -6.3330 -0.5380 42 1 13.4252 -6.2357 -1.1476 43 1 6.7441 -7.5992 0.2744 44 1 7.9432 -7.3933 -1.0741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086527033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:55 Heat of formation + Delta-G solvation = 104.328814 kcal Electronic energy + Delta-G solvation = -26591.328396 eV Core-core repulsion = 22739.458980 eV Total energy + Delta-G solvation = -3851.869416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.41200 -39.89412 -38.83848 -38.30631 -34.85286 -34.60922 -33.15899 -32.20528 -30.51000 -29.95435 -28.44778 -27.42741 -25.07414 -24.95823 -23.74293 -23.56093 -21.81189 -21.31376 -20.84106 -18.93402 -18.66258 -18.03904 -17.28356 -16.70991 -16.64443 -16.03179 -15.69477 -15.32596 -14.94523 -14.75241 -14.50979 -14.15186 -13.91774 -13.84589 -13.55591 -13.33836 -13.29434 -12.84905 -12.74931 -12.64106 -12.23690 -11.87518 -11.69448 -11.34142 -11.02248 -10.81731 -10.74441 -10.51906 -10.45074 -10.19340 -10.14243 -9.80159 -9.66235 -9.44147 -9.19706 -8.96473 -8.85491 -8.61518 -6.97688 -5.78582 -3.07409 -0.33808 0.77531 1.86754 2.32385 2.50060 2.84091 3.38798 3.43838 3.48224 3.49153 3.50225 3.65682 3.84361 4.15571 4.57576 4.59194 4.64227 4.73214 4.80430 5.09926 5.11692 5.25673 5.27689 5.30215 5.33090 5.47844 5.57869 5.63821 5.67273 5.74567 5.90599 5.99486 6.12734 6.14251 6.26040 6.31109 6.41371 6.42691 6.63139 6.79678 6.93676 6.99465 7.08706 7.42334 7.54740 7.70583 8.13548 8.40677 9.51188 10.09282 10.43540 11.43772 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.002110 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.610512 B =13265.006131 C =14215.524456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.058 3.942 3 C -0.083 4.083 4 N -0.356 5.356 5 C 0.033 3.967 6 C 0.032 3.968 7 N -0.423 5.423 8 C 0.181 3.819 9 C 0.568 3.432 10 O -0.501 6.501 11 N -0.700 5.700 12 C 0.130 3.870 13 C -0.120 4.120 14 H 0.095 0.905 15 C -0.169 4.169 16 C 0.167 3.833 17 H 0.062 0.938 18 N -0.705 5.705 19 C -0.242 4.242 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.147 4.147 28 C 0.195 3.805 29 N -0.432 5.432 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.190 0.810 34 H 0.177 0.823 35 H 0.187 0.813 36 H 0.412 0.588 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.077 0.923 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.187 19.226 0.730 28.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 C -0.217 4.217 4 N -0.029 5.029 5 C -0.092 4.092 6 C -0.109 4.109 7 N -0.138 5.138 8 C 0.015 3.985 9 C 0.349 3.651 10 O -0.374 6.374 11 N -0.352 5.352 12 C 0.008 3.992 13 C -0.138 4.138 14 H 0.113 0.887 15 C -0.210 4.210 16 C 0.055 3.945 17 H 0.080 0.920 18 N -0.344 5.344 19 C -0.373 4.373 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.187 4.187 28 C -0.053 4.053 29 N -0.153 5.153 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.207 0.793 34 H 0.194 0.806 35 H 0.204 0.796 36 H 0.248 0.752 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.183 17.648 0.832 27.584 hybrid contribution 0.954 1.871 0.140 2.105 sum -20.229 19.519 0.971 28.128 Atomic orbital electron populations 1.20190 0.86191 1.03582 1.03133 1.21325 0.97433 0.87607 1.01132 1.22523 0.80241 1.01490 1.17403 1.42838 1.06350 1.09017 1.44731 1.22789 0.83077 1.00875 1.02494 1.22152 0.97815 0.89189 1.01754 1.68126 1.27280 1.08975 1.09437 1.22272 0.83899 0.95062 0.97244 1.17225 0.84815 0.84155 0.78855 1.90897 1.31684 1.66814 1.48012 1.45884 1.08178 1.08225 1.72946 1.21596 0.97858 0.77630 1.02131 1.22725 0.93525 0.97640 0.99947 0.88727 1.23894 0.99882 1.02700 0.94483 1.21055 0.85305 0.94393 0.93763 0.91978 1.42160 0.99320 1.71991 1.20928 1.19247 0.84785 1.32848 1.00397 0.91055 1.24762 0.97630 1.01570 0.96969 1.69651 1.23419 1.48814 1.16196 0.86243 0.82796 0.78303 0.78687 1.21227 1.21724 1.21255 1.23445 0.99924 0.93855 1.01463 1.22473 0.94648 0.80261 1.07889 1.70584 0.97719 1.28560 1.18390 0.90390 0.90595 0.90159 0.79281 0.80607 0.79575 0.75153 0.91134 0.91368 0.91440 0.91354 0.78090 0.93425 0.90399 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.42 36.00 0.38 -0.11 16 2 C 0.06 0.61 7.07 -82.87 -0.59 0.02 16 3 C -0.08 -0.68 11.70 -16.66 -0.19 -0.87 16 4 N -0.36 -3.49 2.95 -61.12 -0.18 -3.67 16 5 C 0.03 0.22 11.00 -16.59 -0.18 0.04 16 6 C 0.03 0.24 11.01 -18.17 -0.20 0.04 16 7 N -0.42 -4.76 9.67 -8.68 -0.08 -4.85 16 8 C 0.18 2.46 6.97 -80.54 -0.56 1.89 16 9 C 0.57 8.67 7.81 -12.35 -0.10 8.57 16 10 O -0.50 -9.16 16.23 5.31 0.09 -9.07 16 11 N -0.70 -9.61 5.55 -61.26 -0.34 -9.95 16 12 C 0.13 1.82 5.51 -4.04 -0.02 1.79 16 13 C -0.12 -1.82 3.63 -89.80 -0.33 -2.14 16 14 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 15 C -0.17 -2.83 7.43 -25.92 -0.19 -3.03 16 16 C 0.17 3.26 4.56 -67.12 -0.31 2.96 16 17 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 18 N -0.71 -17.37 5.31 -52.64 -0.28 -17.65 16 19 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 23 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C -0.15 -2.37 7.39 -25.92 -0.19 -2.56 16 28 C 0.19 2.65 7.67 -153.98 -1.18 1.47 16 29 N -0.43 -6.31 10.74 -7.53 -0.08 -6.39 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.19 0.72 8.06 -52.48 -0.42 0.29 16 34 H 0.18 0.36 8.06 -52.49 -0.42 -0.06 16 35 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.41 5.28 7.85 -40.82 -0.32 4.96 16 37 H 0.07 0.99 7.84 -51.93 -0.41 0.59 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.04 7.90 -51.93 -0.41 0.63 16 41 H 0.39 10.02 7.90 -40.82 -0.32 9.70 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 43 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -35.51 377.00 -9.48 -45.00 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -6.08 Total: 10.01 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -3.91 Total: 0.82 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -0.24 Total: -69.61 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.51 -9.48 -45.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086527033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.324 kcal (2) G-P(sol) polarization free energy of solvation -35.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds