Wall clock time and date at job start Tue Mar 31 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39966 * 119.94593 * 2 1 4 4 C 1.35761 * 119.35340 * 180.02562 * 3 2 1 5 5 N 1.36320 * 119.15626 * 359.97438 * 4 3 2 6 6 N 1.39901 * 132.15999 * 180.02562 * 5 4 3 7 7 C 1.30699 * 109.52038 * 180.02562 * 6 5 4 8 8 C 1.40645 * 108.72301 * 359.97438 * 7 6 5 9 9 C 1.46587 * 126.53810 * 180.26756 * 8 7 6 10 10 O 1.21711 * 120.00100 * 179.68696 * 9 8 7 11 11 N 1.34782 * 119.99869 * 359.68469 * 9 8 7 12 12 C 1.46501 * 119.99882 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.46797 * 180.02562 * 12 11 9 14 14 H 1.09001 * 112.85644 * 43.80191 * 13 12 11 15 15 C 1.53783 * 113.61488 * 174.99906 * 13 12 11 16 16 C 1.53780 * 87.08226 * 139.97649 * 15 13 12 17 17 H 1.08999 * 113.61287 * 220.01439 * 16 15 13 18 18 N 1.46496 * 113.61089 * 89.20357 * 16 15 13 19 19 C 1.36938 * 120.00240 * 154.99984 * 18 16 15 20 20 H 1.08004 * 119.99775 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00480 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99638 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00220 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47041 * 90.00341 * 23 21 19 25 25 H 1.48495 * 109.46974 * 210.00227 * 23 21 19 26 26 H 1.48499 * 109.46857 * 329.99982 * 23 21 19 27 27 C 1.53774 * 87.08460 * 334.56777 * 16 15 13 28 28 C 1.36589 * 119.72714 * 359.97438 * 5 4 3 29 29 N 1.31502 * 119.94683 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47324 * 89.99807 * 1 2 3 31 31 H 1.08999 * 109.47062 * 209.99973 * 1 2 3 32 32 H 1.08999 * 109.46953 * 329.99903 * 1 2 3 33 33 H 1.07993 * 120.32894 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.41913 * 179.97438 * 4 3 2 35 35 H 1.07999 * 125.63802 * 180.02562 * 7 6 5 36 36 H 0.97000 * 119.99731 * 0.02562 * 11 9 8 37 37 H 1.08997 * 109.46923 * 299.99738 * 12 11 9 38 38 H 1.09001 * 109.47239 * 59.99670 * 12 11 9 39 39 H 1.08997 * 113.61544 * 254.53269 * 15 13 12 40 40 H 1.09005 * 113.61370 * 25.34607 * 15 13 12 41 41 H 0.97005 * 120.00620 * 334.99524 * 18 16 15 42 42 H 0.97004 * 119.99565 * 179.97438 * 22 21 19 43 43 H 1.09003 * 113.61912 * 270.88546 * 27 16 15 44 44 H 1.08995 * 113.61564 * 139.97942 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.2128 0.0000 4 6 3.5632 1.1988 -0.0005 5 7 4.2150 0.0015 -0.0005 6 7 5.5748 -0.3274 -0.0005 7 6 5.7097 -1.6274 -0.0011 8 6 4.4314 -2.2139 -0.0008 9 6 4.1293 -3.6483 0.0042 10 8 2.9725 -4.0267 0.0096 11 7 5.1327 -4.5483 0.0029 12 6 4.8308 -5.9819 0.0074 13 6 6.1373 -6.7780 0.0054 14 1 6.8782 -6.3776 0.6974 15 6 5.9332 -8.2970 0.1326 16 6 7.0601 -8.4557 -0.9017 17 1 6.8744 -9.2429 -1.6323 18 7 8.3961 -8.5362 -0.3061 19 6 9.4085 -9.1676 -0.9781 20 1 9.2219 -9.6066 -1.9471 21 6 10.6746 -9.2434 -0.4140 22 7 10.9018 -8.7089 0.7670 23 14 12.0554 -10.1054 -1.3306 24 1 12.7677 -9.1247 -2.1884 25 1 13.0075 -10.6918 -0.3535 26 1 11.4885 -11.1848 -2.1783 27 6 6.6909 -7.0498 -1.4034 28 6 3.4971 -1.1605 0.0006 29 7 2.1634 -1.1394 -0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6702 2.1506 -0.0004 34 1 4.1196 2.1244 -0.0010 35 1 6.6477 -2.1627 -0.0008 36 1 6.0546 -4.2467 -0.0010 37 1 4.2563 -6.2293 0.9000 38 1 4.2500 -6.2337 -0.8800 39 1 6.1855 -8.6905 1.1173 40 1 4.9610 -8.6382 -0.2231 41 1 8.5637 -8.1422 0.5644 42 1 11.7865 -8.7622 1.1614 43 1 5.9264 -7.0502 -2.1804 44 1 7.5550 -6.4365 -1.6588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086535734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:19 Heat of formation + Delta-G solvation = 113.422111 kcal Electronic energy + Delta-G solvation = -26502.496274 eV Core-core repulsion = 22651.021173 eV Total energy + Delta-G solvation = -3851.475101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.81526 -39.53227 -38.71708 -38.14848 -34.57263 -34.46827 -33.15476 -32.58594 -30.51644 -29.84617 -28.76311 -27.17665 -25.00045 -24.60665 -23.74711 -23.05261 -22.73970 -21.55660 -20.32469 -18.96249 -18.24553 -17.59826 -17.36212 -16.83094 -16.61843 -15.85530 -15.58471 -15.06161 -14.76747 -14.72441 -14.27201 -14.16369 -14.05661 -13.92084 -13.44302 -13.21414 -13.11903 -12.84140 -12.80518 -12.27164 -12.19707 -11.88029 -11.84205 -11.61865 -11.29336 -11.00877 -10.81995 -10.43073 -10.19533 -10.15841 -9.99702 -9.93817 -9.67116 -9.66113 -9.39009 -8.88712 -8.82589 -8.29220 -6.97651 -5.79045 -3.07727 -0.02379 0.36430 1.53411 1.86091 2.77153 3.26756 3.32709 3.43097 3.48502 3.50085 3.56252 3.72918 3.79229 4.27442 4.53681 4.57463 4.67140 4.74541 4.86645 5.04103 5.07769 5.13410 5.16188 5.25625 5.28317 5.40297 5.48236 5.63357 5.71180 5.78223 5.84132 5.93646 6.00257 6.08620 6.18790 6.28177 6.43138 6.56922 6.68014 6.80056 6.92029 6.97171 7.09467 7.25756 7.70869 7.73053 8.40360 8.47615 9.50946 10.09134 10.43363 11.43400 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.023525 B = 0.002046 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.931843 B =13681.119478 C =14581.025502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.208 3.792 3 C -0.221 4.221 4 C 0.168 3.832 5 N -0.312 5.312 6 N -0.311 5.311 7 C 0.132 3.868 8 C -0.288 4.288 9 C 0.593 3.407 10 O -0.536 6.536 11 N -0.724 5.724 12 C 0.136 3.864 13 C -0.119 4.119 14 H 0.093 0.907 15 C -0.148 4.148 16 C 0.167 3.833 17 H 0.062 0.938 18 N -0.706 5.706 19 C -0.241 4.241 20 H 0.072 0.928 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.168 4.168 28 C 0.323 3.677 29 N -0.444 5.444 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.171 0.829 34 H 0.185 0.815 35 H 0.207 0.793 36 H 0.398 0.602 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.068 0.932 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.836 23.505 -0.819 30.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.046 3.954 3 C -0.245 4.245 4 C 0.033 3.967 5 N -0.081 5.081 6 N -0.132 5.132 7 C -0.050 4.050 8 C -0.304 4.304 9 C 0.380 3.620 10 O -0.413 6.413 11 N -0.375 5.375 12 C 0.013 3.987 13 C -0.138 4.138 14 H 0.111 0.889 15 C -0.187 4.187 16 C 0.054 3.946 17 H 0.080 0.920 18 N -0.344 5.344 19 C -0.372 4.372 20 H 0.090 0.910 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.209 4.209 28 C 0.091 3.909 29 N -0.156 5.156 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.188 0.812 34 H 0.202 0.798 35 H 0.224 0.776 36 H 0.232 0.768 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.070 23.237 -0.915 30.718 hybrid contribution 1.497 0.092 -0.149 1.507 sum -18.573 23.330 -1.064 29.839 Atomic orbital electron populations 1.20865 0.86673 1.04763 1.04331 1.22137 0.98315 0.87403 0.87592 1.21779 0.92436 1.01418 1.08852 1.22137 0.92702 0.88527 0.93367 1.47060 1.07830 1.06424 1.46775 1.77622 0.88539 1.15942 1.31108 1.24237 0.98465 0.90642 0.91670 1.19484 0.90474 0.93386 1.27076 1.16750 0.85186 0.83612 0.76476 1.90823 1.19720 1.80565 1.50229 1.45785 1.08978 1.06714 1.76030 1.21428 0.97378 0.78238 1.01695 1.22710 0.95664 0.95720 0.99703 0.88904 1.23439 0.99871 0.94062 1.01374 1.21058 0.85681 0.94048 0.93764 0.92036 1.42168 1.04201 1.66582 1.21480 1.19295 0.89046 1.28137 1.00701 0.91010 1.24762 0.97731 1.01467 0.97015 1.69664 1.21838 1.50000 1.16584 0.86168 0.82199 0.79135 0.78561 1.21724 1.21791 1.20718 1.23881 1.00106 1.02317 0.94588 1.20357 0.87887 0.86243 0.96386 1.68191 1.03689 1.28274 1.15495 0.88924 0.89181 0.89505 0.81173 0.79841 0.77620 0.76796 0.91901 0.91640 0.91376 0.90460 0.78108 0.93481 0.91384 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 10.19 36.00 0.37 -0.10 16 2 C 0.21 1.63 6.83 -82.09 -0.56 1.07 16 3 C -0.22 -1.06 9.72 -39.82 -0.39 -1.44 16 4 C 0.17 1.08 11.29 -16.44 -0.19 0.89 16 5 N -0.31 -3.42 3.86 -11.97 -0.05 -3.47 16 6 N -0.31 -3.63 12.58 30.76 0.39 -3.24 16 7 C 0.13 1.46 11.44 -17.13 -0.20 1.26 16 8 C -0.29 -3.98 6.17 -104.65 -0.65 -4.62 16 9 C 0.59 9.28 7.78 -12.89 -0.10 9.18 16 10 O -0.54 -10.30 16.74 5.18 0.09 -10.21 16 11 N -0.72 -9.78 5.55 -61.65 -0.34 -10.12 16 12 C 0.14 1.94 5.51 -4.04 -0.02 1.92 16 13 C -0.12 -1.82 3.63 -89.80 -0.33 -2.15 16 14 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 15 C -0.15 -2.41 7.39 -25.92 -0.19 -2.60 16 16 C 0.17 3.27 4.56 -67.12 -0.31 2.97 16 17 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 18 N -0.71 -17.40 5.31 -52.64 -0.28 -17.68 16 19 C -0.24 -6.62 9.97 -15.06 -0.15 -6.77 16 20 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 23 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C -0.17 -2.83 7.43 -25.92 -0.19 -3.02 16 28 C 0.32 4.36 7.74 -155.84 -1.21 3.16 16 29 N -0.44 -5.70 10.18 -8.25 -0.08 -5.79 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.11 8.09 -51.93 -0.42 -0.31 16 33 H 0.17 0.07 8.06 -52.49 -0.42 -0.36 16 34 H 0.18 0.48 8.06 -52.49 -0.42 0.06 16 35 H 0.21 1.55 7.46 -52.49 -0.39 1.16 16 36 H 0.40 4.49 7.39 -40.82 -0.30 4.19 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.97 7.84 -51.93 -0.41 0.57 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 41 H 0.38 10.02 7.90 -40.82 -0.32 9.69 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.07 1.04 7.90 -51.93 -0.41 0.63 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 377.21 15.07 5.68 5.68 Total: -1.00 -37.37 377.21 -9.11 -46.48 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.02 Total: 8.97 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -4.20 Total: -0.75 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: 0.36 Total: -67.41 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.37 -9.11 -46.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086535734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.904 kcal (2) G-P(sol) polarization free energy of solvation -37.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds