Wall clock time and date at job start Tue Mar 31 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33722 * 126.12139 * 2 1 4 4 H 0.96996 * 124.97929 * 359.95444 * 3 2 1 5 5 N 1.39883 * 110.04720 * 179.73502 * 3 2 1 6 6 C 1.31905 * 109.18017 * 0.39005 * 5 3 2 7 7 N 1.34424 * 134.12817 * 179.91537 * 6 5 3 8 8 C 1.30500 * 121.56222 * 179.68349 * 7 6 5 9 9 C 1.40818 * 122.37544 * 0.02562 * 8 7 6 10 10 C 1.47516 * 119.91445 * 179.97438 * 9 8 7 11 11 O 1.21596 * 119.99869 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00190 * 359.97438 * 10 9 8 13 13 C 1.46498 * 120.00096 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47432 * 180.02562 * 13 12 10 15 15 H 1.09004 * 112.84610 * 314.66236 * 14 13 12 16 16 C 1.53780 * 113.61745 * 85.86072 * 14 13 12 17 17 C 1.53951 * 87.01980 * 139.95486 * 16 14 13 18 18 H 1.09004 * 113.74156 * 220.05444 * 17 16 14 19 19 N 1.46501 * 113.54019 * 89.18819 * 17 16 14 20 20 C 1.36933 * 120.00058 * 107.50047 * 19 17 16 21 21 H 1.08009 * 120.00036 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00080 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00161 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00069 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46858 * 90.00089 * 24 22 20 26 26 H 1.48500 * 109.47420 * 210.00193 * 24 22 20 27 27 H 1.48501 * 109.46941 * 330.00018 * 24 22 20 28 28 C 1.53774 * 113.61520 * 183.46891 * 14 13 12 29 29 C 1.38865 * 120.16602 * 359.95299 * 9 8 7 30 30 C 1.38536 * 126.12650 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.46965 * 270.04767 * 1 2 3 32 32 H 1.08997 * 109.46860 * 30.04842 * 1 2 3 33 33 H 1.08998 * 109.47067 * 150.04218 * 1 2 3 34 34 H 1.07995 * 118.81335 * 179.97438 * 8 7 6 35 35 H 0.97003 * 120.00153 * 0.02562 * 12 10 9 36 36 H 1.09005 * 109.46971 * 300.00062 * 13 12 10 37 37 H 1.09002 * 109.47069 * 59.99642 * 13 12 10 38 38 H 1.09006 * 113.61068 * 254.53513 * 16 14 13 39 39 H 1.08998 * 113.61483 * 25.43141 * 16 14 13 40 40 H 0.97002 * 120.00125 * 287.50556 * 19 17 16 41 41 H 0.96999 * 120.00134 * 179.97438 * 23 22 20 42 42 H 1.09000 * 113.61634 * 334.56646 * 28 14 13 43 43 H 1.09006 * 113.61395 * 105.38263 * 28 14 13 44 44 H 1.07995 * 121.05055 * 180.02562 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2953 1.0802 0.0000 4 1 1.9811 1.9978 -0.0006 5 7 3.6394 0.6929 0.0061 6 6 3.7109 -0.6242 0.0015 7 7 4.7251 -1.5065 0.0024 8 6 4.5107 -2.7938 0.0028 9 6 3.2136 -3.3421 0.0018 10 6 3.0339 -4.8063 0.0018 11 8 1.9146 -5.2814 0.0005 12 7 4.1103 -5.6174 0.0022 13 6 3.9318 -7.0714 0.0017 14 6 5.3013 -7.7535 0.0029 15 1 5.9957 -7.3099 -0.7107 16 6 5.8966 -7.9374 1.4088 17 6 6.3764 -9.3221 0.9369 18 1 6.2694 -10.1035 1.6893 19 7 7.7061 -9.3025 0.3224 20 6 8.7783 -9.8272 0.9933 21 1 8.6436 -10.2559 1.9755 22 6 10.0383 -9.8081 0.4112 23 7 11.0688 -10.3129 1.0559 24 14 10.2712 -9.0673 -1.2877 25 1 10.5816 -7.6209 -1.1586 26 1 11.3922 -9.7544 -1.9780 27 1 9.0250 -9.2377 -2.0771 28 6 5.2259 -9.2870 -0.0828 29 6 2.1034 -2.5080 0.0013 30 6 2.3238 -1.1190 0.0005 31 1 -0.3633 0.0009 1.0276 32 1 -0.3633 0.8895 -0.5146 33 1 -0.3633 -0.8903 -0.5132 34 1 5.3585 -3.4627 0.0031 35 1 5.0032 -5.2384 0.0029 36 1 3.3769 -7.3697 0.8913 37 1 3.3780 -7.3692 -0.8887 38 1 6.7088 -7.2459 1.6329 39 1 5.1465 -7.9810 2.1984 40 1 7.8271 -8.9177 -0.5598 41 1 11.9492 -10.2999 0.6490 42 1 4.2919 -9.7002 0.2982 43 1 5.4959 -9.6834 -1.0616 44 1 1.1023 -2.9131 0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086553128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:22 Heat of formation + Delta-G solvation = 103.575921 kcal Electronic energy + Delta-G solvation = -26428.887268 eV Core-core repulsion = 22576.985204 eV Total energy + Delta-G solvation = -3851.902064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.10256 -40.10563 -38.80021 -37.96769 -34.85025 -33.95009 -33.26442 -32.02994 -31.48200 -30.60333 -28.42799 -27.20329 -25.24365 -25.16469 -23.99633 -23.17269 -21.73639 -21.09948 -20.51162 -18.82262 -18.51033 -18.00845 -17.62554 -17.28094 -16.35568 -16.10059 -15.53509 -15.33053 -15.07800 -14.78284 -14.40745 -14.01238 -13.91477 -13.88121 -13.57973 -13.53319 -13.38241 -13.05117 -12.86014 -12.72247 -12.47665 -12.03493 -11.63648 -11.57108 -11.35204 -11.03726 -10.91342 -10.51519 -10.45772 -10.19107 -9.99012 -9.67079 -9.61826 -9.56372 -9.47536 -9.11891 -8.90995 -8.46960 -7.30091 -5.79337 -3.15621 -0.16011 0.81222 1.71473 1.90053 2.76959 3.00313 3.36139 3.38417 3.41974 3.44639 3.57841 3.65887 4.09129 4.30487 4.40320 4.56614 4.59760 4.65262 4.72591 4.81221 4.93401 4.96537 5.04941 5.08959 5.17362 5.39088 5.43958 5.51264 5.63342 5.65084 5.75833 5.86383 5.92509 5.97605 6.13033 6.23942 6.30958 6.36328 6.48936 6.63284 6.73965 6.88124 6.89593 7.39076 7.57347 7.98490 8.08080 8.40303 9.18152 9.90366 10.09444 11.38716 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018442 B = 0.002218 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.931629 B =12623.243515 C =13715.234968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.154 3.846 3 N -0.409 5.409 4 H 0.448 0.552 5 N -0.290 5.290 6 C 0.285 3.715 7 N -0.473 5.473 8 C 0.224 3.776 9 C -0.243 4.243 10 C 0.569 3.431 11 O -0.547 6.547 12 N -0.720 5.720 13 C 0.132 3.868 14 C -0.125 4.125 15 H 0.090 0.910 16 C -0.167 4.167 17 C 0.172 3.828 18 H 0.071 0.929 19 N -0.730 5.730 20 C -0.247 4.247 21 H 0.092 0.908 22 C 0.005 3.995 23 N -0.932 5.932 24 Si 0.884 3.116 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.148 4.148 29 C 0.089 3.911 30 C -0.274 4.274 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.168 0.832 35 H 0.401 0.599 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.418 21.829 -3.171 33.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.011 3.989 3 N -0.110 5.110 4 H 0.294 0.706 5 N -0.120 5.120 6 C 0.022 3.978 7 N -0.185 5.185 8 C 0.037 3.963 9 C -0.251 4.251 10 C 0.356 3.644 11 O -0.426 6.426 12 N -0.371 5.371 13 C 0.009 3.991 14 C -0.144 4.144 15 H 0.109 0.891 16 C -0.208 4.208 17 C 0.061 3.939 18 H 0.089 0.911 19 N -0.370 5.370 20 C -0.376 4.376 21 H 0.110 0.890 22 C -0.191 4.191 23 N -0.579 5.579 24 Si 0.714 3.286 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.203 1.203 28 C -0.188 4.188 29 C 0.061 3.939 30 C -0.286 4.286 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.185 0.815 35 H 0.237 0.763 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -24.463 22.995 -3.003 33.707 hybrid contribution -0.563 0.288 -1.249 1.400 sum -25.026 23.283 -4.252 34.445 Atomic orbital electron populations 1.20717 0.85377 1.05313 1.04765 1.21459 0.94749 0.87132 0.95556 1.46446 1.04577 1.09046 1.50929 0.70584 1.77809 0.91717 1.10365 1.32101 1.21427 0.88645 0.91490 0.96200 1.67377 1.31500 1.01757 1.17862 1.23082 0.95409 0.90479 0.87329 1.20509 0.94973 0.94357 1.15246 1.17821 0.84747 0.85533 0.76300 1.90769 1.24041 1.76878 1.50873 1.45964 1.08872 1.07521 1.74745 1.21496 0.97672 0.77836 1.02078 1.22769 0.94986 0.96640 0.99957 0.89137 1.23891 1.00161 1.02270 0.94457 1.21041 0.84356 0.94658 0.93891 0.91094 1.42513 1.03680 1.72050 1.18745 1.19108 0.85638 1.31824 1.01071 0.89040 1.24687 0.95575 1.00784 0.98032 1.69698 0.99463 1.50633 1.38120 0.86567 0.77296 0.79229 0.85536 1.20966 1.21703 1.20306 1.23454 1.00241 0.93757 1.01327 1.21095 0.99449 0.89209 0.84175 1.20054 0.94833 0.94297 1.19429 0.88577 0.89810 0.88392 0.81519 0.76343 0.91176 0.91575 0.91200 0.90893 0.80507 0.92991 0.89995 0.91429 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.14 10.45 36.01 0.38 0.24 16 2 C 0.15 0.90 7.28 -81.66 -0.59 0.31 16 3 N -0.41 -2.57 7.16 33.86 0.24 -2.33 16 4 H 0.45 0.92 8.96 -182.77 -1.64 -0.72 16 5 N -0.29 -3.34 12.68 31.97 0.41 -2.94 16 6 C 0.28 3.56 8.60 -156.39 -1.35 2.21 16 7 N -0.47 -6.17 10.42 -11.02 -0.11 -6.29 16 8 C 0.22 2.36 10.64 -17.14 -0.18 2.18 16 9 C -0.24 -2.57 5.88 -104.91 -0.62 -3.19 16 10 C 0.57 6.83 7.76 -12.48 -0.10 6.73 16 11 O -0.55 -8.13 16.34 5.28 0.09 -8.04 16 12 N -0.72 -7.80 5.51 -61.35 -0.34 -8.14 16 13 C 0.13 1.55 5.50 -4.04 -0.02 1.53 16 14 C -0.12 -1.63 3.62 -89.81 -0.33 -1.96 16 15 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 16 C -0.17 -2.51 7.44 -25.83 -0.19 -2.70 16 17 C 0.17 3.11 4.57 -67.03 -0.31 2.80 16 18 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 19 N -0.73 -16.54 5.11 -52.55 -0.27 -16.81 16 20 C -0.25 -6.80 10.45 -15.06 -0.16 -6.95 16 21 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 22 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 23 N -0.93 -28.95 13.97 55.49 0.78 -28.18 16 24 Si 0.88 21.69 27.74 -169.99 -4.71 16.97 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 27 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 28 C -0.15 -2.12 7.39 -25.92 -0.19 -2.31 16 29 C 0.09 0.84 9.75 -38.44 -0.37 0.47 16 30 C -0.27 -2.59 6.26 -105.21 -0.66 -3.25 16 31 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 32 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 33 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 34 H 0.17 1.32 6.30 -52.49 -0.33 0.99 16 35 H 0.40 3.63 6.44 -40.82 -0.26 3.36 16 36 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.07 0.99 7.92 -51.93 -0.41 0.58 16 40 H 0.36 8.04 5.76 -40.82 -0.24 7.80 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.15 1.16 7.67 -52.49 -0.40 0.75 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -37.50 371.24 -10.20 -47.70 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.08 Total: 6.29 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -4.78 Total: -3.84 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: 0.70 Total: -64.68 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.09 Total: -8.04 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.50 -10.20 -47.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086553128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.276 kcal (2) G-P(sol) polarization free energy of solvation -37.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds