Wall clock time and date at job start Tue Mar 31 2020 05:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30705 * 125.63452 * 2 1 4 4 N 1.39905 * 109.51605 * 180.02562 * 3 2 1 5 5 C 1.36311 * 132.16035 * 180.02562 * 4 3 2 6 6 C 1.35759 * 119.15806 * 179.97438 * 5 4 3 7 7 C 1.39960 * 119.35446 * 0.28384 * 6 5 4 8 8 N 1.31503 * 120.10307 * 359.41640 * 7 6 5 9 9 C 1.33379 * 120.85622 * 0.59257 * 8 7 6 10 10 C 1.40641 * 125.63626 * 180.02562 * 2 1 3 11 11 C 1.46580 * 126.54013 * 359.96190 * 10 2 1 12 12 O 1.21716 * 119.99808 * 270.00202 * 11 10 2 13 13 N 1.34779 * 120.00135 * 89.99699 * 11 10 2 14 14 C 1.46502 * 120.00104 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46947 * 180.02562 * 14 13 11 16 16 H 1.08999 * 112.85154 * 314.66959 * 15 14 13 17 17 C 1.53774 * 113.61131 * 85.86837 * 15 14 13 18 18 C 1.53960 * 87.02248 * 139.95037 * 17 15 14 19 19 H 1.08996 * 113.74141 * 220.05951 * 18 17 15 20 20 N 1.46495 * 113.53547 * 89.18524 * 18 17 15 21 21 C 1.36939 * 120.00019 * 107.51154 * 20 18 17 22 22 H 1.07995 * 119.99702 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99912 * 179.97438 * 21 20 18 24 24 N 1.31621 * 120.00149 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99778 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47088 * 59.99628 * 25 23 21 27 27 H 1.48497 * 109.46845 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46777 * 299.99508 * 25 23 21 29 29 C 1.53779 * 113.61062 * 183.47051 * 15 14 13 30 30 H 1.09002 * 109.47170 * 269.95669 * 1 2 3 31 31 H 1.08998 * 109.47525 * 29.95526 * 1 2 3 32 32 H 1.08995 * 109.47566 * 149.96018 * 1 2 3 33 33 H 1.08007 * 120.42399 * 359.97438 * 5 4 3 34 34 H 1.08002 * 120.32054 * 179.97438 * 6 5 4 35 35 H 1.07998 * 119.95223 * 179.72208 * 7 6 5 36 36 H 0.96993 * 119.99971 * 0.02562 * 13 11 10 37 37 H 1.08998 * 109.47014 * 300.00851 * 14 13 11 38 38 H 1.09001 * 109.46637 * 60.00227 * 14 13 11 39 39 H 1.09002 * 113.61589 * 254.52768 * 17 15 14 40 40 H 1.09004 * 113.61835 * 25.43034 * 17 15 14 41 41 H 0.97001 * 120.00387 * 287.50239 * 20 18 17 42 42 H 0.96999 * 119.99667 * 180.02562 * 24 23 21 43 43 H 1.08996 * 113.61917 * 334.56995 * 29 15 14 44 44 H 1.09003 * 113.61353 * 105.47258 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2685 1.0623 0.0000 4 7 3.6125 0.6739 -0.0006 5 6 4.7720 1.3906 -0.0004 6 6 5.9580 0.7299 -0.0006 7 6 5.9637 -0.6696 -0.0071 8 7 4.8288 -1.3339 -0.0013 9 6 3.6600 -0.6912 -0.0011 10 6 2.3264 -1.1430 -0.0005 11 6 1.8777 -2.5385 -0.0004 12 8 1.6920 -3.1179 1.0538 13 7 1.6708 -3.1800 -1.1675 14 6 1.2229 -4.5748 -1.1673 15 6 1.0664 -5.0604 -2.6098 16 1 0.5465 -4.3424 -3.2440 17 6 2.3708 -5.5943 -3.2248 18 6 1.5188 -6.7031 -3.8691 19 1 1.9943 -7.6838 -3.8588 20 7 0.9875 -6.3421 -5.1857 21 6 1.5057 -6.9183 -6.3147 22 1 2.3065 -7.6385 -6.2344 23 6 1.0019 -6.5766 -7.5622 24 7 0.0257 -5.6992 -7.6599 25 14 1.7085 -7.3631 -9.1022 26 1 1.5282 -8.8355 -9.0334 27 1 1.0028 -6.8337 -10.2967 28 1 3.1559 -7.0456 -9.2006 29 6 0.5170 -6.4923 -2.7215 30 1 -0.3633 -0.0008 1.0277 31 1 -0.3634 0.8903 -0.5131 32 1 -0.3634 -0.8896 -0.5144 33 1 4.7476 2.4704 0.0000 34 1 6.8880 1.2790 -0.0008 35 1 6.9016 -1.2050 -0.0118 36 1 1.8191 -2.7183 -2.0075 37 1 1.9595 -5.1929 -0.6540 38 1 0.2648 -4.6487 -0.6527 39 1 2.8232 -4.9148 -3.9471 40 1 3.0825 -5.9639 -2.4865 41 1 0.2684 -5.6950 -5.2578 42 1 -0.3266 -5.4607 -8.5316 43 1 0.7209 -7.1079 -1.8454 44 1 -0.5251 -6.5367 -3.0380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086554925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:30 Heat of formation + Delta-G solvation = 113.736508 kcal Electronic energy + Delta-G solvation = -26956.073605 eV Core-core repulsion = 23104.612138 eV Total energy + Delta-G solvation = -3851.461468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.78344 -39.58424 -38.64827 -38.12008 -34.58182 -34.48339 -33.13123 -32.52283 -30.44345 -29.80922 -28.74316 -27.16650 -25.00715 -24.95253 -24.20918 -23.46502 -21.81837 -21.36836 -20.26637 -18.73239 -18.26439 -17.79995 -17.40288 -17.05896 -16.63091 -15.98540 -15.77869 -15.10185 -14.90347 -14.60446 -14.11228 -14.03750 -13.88161 -13.62663 -13.52498 -13.43032 -12.91936 -12.84485 -12.76549 -12.65629 -12.17857 -11.86867 -11.62926 -11.49204 -11.31977 -11.01684 -10.81856 -10.44935 -10.26149 -10.19548 -10.11424 -9.82404 -9.74866 -9.66729 -9.41708 -8.89440 -8.83102 -8.28857 -6.98309 -5.79518 -3.08287 0.04365 0.40982 1.55564 2.04330 2.61534 2.93957 3.36078 3.40553 3.43047 3.47374 3.48367 3.74649 3.91668 4.37930 4.50250 4.56849 4.70483 4.86909 5.02724 5.07942 5.14299 5.20467 5.27013 5.29005 5.31377 5.47402 5.52339 5.55695 5.69960 5.77638 5.90879 5.92884 6.02623 6.12121 6.17620 6.27481 6.42119 6.52993 6.65122 6.79740 6.95475 7.00426 7.08985 7.19124 7.64946 7.69760 8.34439 8.39928 9.50359 10.08541 10.42787 11.42949 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.002486 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.325467 B =11261.348734 C =11853.006911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.159 3.841 3 N -0.311 5.311 4 N -0.306 5.306 5 C 0.168 3.832 6 C -0.227 4.227 7 C 0.187 3.813 8 N -0.460 5.460 9 C 0.298 3.702 10 C -0.278 4.278 11 C 0.607 3.393 12 O -0.539 6.539 13 N -0.712 5.712 14 C 0.131 3.869 15 C -0.119 4.119 16 H 0.092 0.908 17 C -0.168 4.168 18 C 0.167 3.833 19 H 0.062 0.938 20 N -0.706 5.706 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.908 3.092 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.147 4.147 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.183 0.817 34 H 0.171 0.829 35 H 0.184 0.816 36 H 0.402 0.598 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.077 0.923 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.453 16.185 17.744 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.001 4.001 3 N -0.136 5.136 4 N -0.074 5.074 5 C 0.032 3.968 6 C -0.250 4.250 7 C 0.004 3.996 8 N -0.170 5.170 9 C 0.068 3.932 10 C -0.294 4.294 11 C 0.391 3.609 12 O -0.416 6.416 13 N -0.363 5.363 14 C 0.008 3.992 15 C -0.138 4.138 16 H 0.111 0.889 17 C -0.209 4.209 18 C 0.055 3.945 19 H 0.080 0.920 20 N -0.344 5.344 21 C -0.373 4.373 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.187 4.187 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.200 0.800 34 H 0.189 0.811 35 H 0.201 0.799 36 H 0.236 0.764 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.041 15.985 18.325 25.943 hybrid contribution 0.538 0.319 -1.304 1.446 sum 9.579 16.304 17.021 25.442 Atomic orbital electron populations 1.20412 0.84721 1.04548 1.04306 1.22423 0.97341 0.88261 0.92108 1.77544 0.82335 1.21201 1.32497 1.46851 1.06711 1.07113 1.46741 1.22143 0.81658 0.99641 0.93324 1.21897 0.98202 0.96355 1.08591 1.23550 0.96577 0.91606 0.87850 1.68185 0.96157 1.37349 1.15355 1.20312 0.93733 0.80570 0.98614 1.19294 0.88840 0.95126 1.26190 1.16750 0.76498 0.83832 0.83806 1.90794 1.51666 1.67650 1.31478 1.46046 1.68017 1.13979 1.08225 1.21500 0.99513 0.80660 0.97506 1.22703 0.99801 0.97475 0.93819 0.88945 1.23905 0.95690 1.01498 0.99796 1.21099 0.92697 0.95400 0.85321 0.91987 1.42167 1.42305 1.50459 0.99518 1.19252 1.14350 1.18779 0.84884 0.91059 1.24758 0.98819 0.99696 0.97638 1.69652 1.28876 1.36068 1.23554 0.86248 0.78254 0.78769 0.82805 1.21194 1.21702 1.21241 1.23432 1.00592 0.94769 0.99877 0.89093 0.89590 0.89394 0.80008 0.81127 0.79870 0.76392 0.91518 0.91713 0.91636 0.91365 0.78116 0.93417 0.90429 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.26 36.00 0.37 -0.37 16 2 C 0.16 1.98 7.22 -82.17 -0.59 1.39 16 3 N -0.31 -3.85 12.58 33.80 0.43 -3.42 16 4 N -0.31 -3.44 3.86 -11.97 -0.05 -3.49 16 5 C 0.17 1.10 11.29 -16.45 -0.19 0.91 16 6 C -0.23 -1.01 10.05 -39.82 -0.40 -1.41 16 7 C 0.19 1.30 11.28 -17.05 -0.19 1.11 16 8 N -0.46 -5.59 10.47 -12.00 -0.13 -5.72 16 9 C 0.30 3.99 7.90 -155.83 -1.23 2.76 16 10 C -0.28 -3.99 5.91 -104.66 -0.62 -4.61 16 11 C 0.61 9.57 7.28 -12.90 -0.09 9.47 16 12 O -0.54 -10.26 17.11 5.17 0.09 -10.17 16 13 N -0.71 -10.08 5.55 -61.65 -0.34 -10.42 16 14 C 0.13 1.89 5.50 -4.04 -0.02 1.86 16 15 C -0.12 -1.85 3.62 -89.81 -0.33 -2.17 16 16 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 17 C -0.17 -2.90 7.44 -25.83 -0.19 -3.09 16 18 C 0.17 3.31 4.57 -67.03 -0.31 3.00 16 19 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 20 N -0.71 -17.53 5.31 -52.55 -0.28 -17.81 16 21 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 25 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 C -0.15 -2.40 7.39 -25.92 -0.19 -2.59 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.79 7.97 -51.93 -0.41 0.38 16 33 H 0.18 0.52 8.06 -52.48 -0.42 0.10 16 34 H 0.17 0.03 8.06 -52.49 -0.42 -0.39 16 35 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.40 5.28 8.45 -40.82 -0.35 4.94 16 37 H 0.07 1.00 7.87 -51.93 -0.41 0.60 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.08 7.92 -51.93 -0.41 0.67 16 41 H 0.38 10.08 7.90 -40.82 -0.32 9.76 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -36.88 379.46 -9.18 -46.06 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.09 Total: 10.27 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -4.23 Total: -1.03 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: 0.36 Total: -68.07 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.88 -9.18 -46.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086554925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.800 kcal (2) G-P(sol) polarization free energy of solvation -36.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds