Wall clock time and date at job start Tue Mar 31 2020 05:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99933 * 2 1 4 4 H 1.48505 * 109.47096 * 270.00172 * 3 2 1 5 5 H 1.48507 * 109.47135 * 29.99939 * 3 2 1 6 6 H 1.48492 * 109.47157 * 150.00094 * 3 2 1 7 7 C 1.38811 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99987 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99935 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00330 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.01861 * 33.60349 * 10 9 7 12 12 C 1.54269 * 110.03046 * 272.16804 * 10 9 7 13 13 C 1.54894 * 104.19352 * 264.32235 * 12 10 9 14 14 C 1.54887 * 102.74945 * 322.05734 * 13 12 10 15 15 H 1.08999 * 110.60122 * 279.20747 * 14 13 12 16 16 C 1.53003 * 110.48615 * 156.62050 * 14 13 12 17 17 N 1.46504 * 109.47088 * 70.22545 * 16 14 13 18 18 C 1.34772 * 120.00092 * 179.97438 * 17 16 14 19 19 O 1.21591 * 120.00011 * 0.02562 * 18 17 16 20 20 C 1.47535 * 120.00069 * 180.02562 * 18 17 16 21 21 C 1.39408 * 120.75294 * 0.02562 * 20 18 17 22 22 N 1.31917 * 121.01547 * 179.97438 * 21 20 18 23 23 C 1.31797 * 122.60059 * 359.97438 * 22 21 20 24 24 C 1.39441 * 120.63233 * 0.02562 * 23 22 21 25 25 N 1.35701 * 134.43488 * 180.02562 * 24 23 22 26 26 C 1.30132 * 109.50307 * 179.97438 * 25 24 23 27 27 N 1.36254 * 110.05782 * 0.24401 * 26 25 24 28 28 H 0.96998 * 126.30005 * 179.73441 * 27 26 25 29 29 C 1.36929 * 107.40581 * 359.60438 * 27 26 25 30 30 C 1.53865 * 110.03415 * 155.00084 * 10 9 7 31 31 H 0.96999 * 120.00125 * 359.97438 * 1 2 3 32 32 H 0.97003 * 119.99962 * 359.97438 * 9 7 2 33 33 H 1.09001 * 110.48838 * 23.00050 * 12 10 9 34 34 H 1.09006 * 110.48706 * 145.51401 * 12 10 9 35 35 H 1.09008 * 110.75405 * 203.74269 * 13 12 10 36 36 H 1.08999 * 110.75622 * 80.37901 * 13 12 10 37 37 H 1.08998 * 109.47064 * 310.22716 * 16 14 13 38 38 H 1.08994 * 109.47171 * 190.22617 * 16 14 13 39 39 H 0.97004 * 119.99460 * 0.02562 * 17 16 14 40 40 H 1.08000 * 119.49595 * 359.97438 * 21 20 18 41 41 H 1.07997 * 119.68401 * 180.02562 * 23 22 21 42 42 H 1.08002 * 124.96788 * 179.97438 * 26 25 24 43 43 H 1.09000 * 110.03478 * 359.97438 * 30 10 9 44 44 H 1.09004 * 110.03435 * 238.56733 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 1 3.5599 -3.2206 -0.5675 12 6 4.3295 -2.9555 1.4473 13 6 5.7476 -2.4481 1.8089 14 6 6.5283 -2.6433 0.4855 15 1 6.8456 -3.6804 0.3768 16 6 7.7370 -1.7067 0.4336 17 7 8.7410 -2.1508 1.4036 18 6 9.8982 -1.4725 1.5343 19 8 10.1087 -0.4915 0.8473 20 6 10.9095 -1.9201 2.5108 21 6 10.6846 -3.0428 3.3060 22 7 11.5855 -3.4479 4.1804 23 6 12.7354 -2.8278 4.3542 24 6 13.0520 -1.6949 3.6055 25 7 14.1202 -0.8596 3.5516 26 6 13.9057 0.0629 2.6593 27 7 12.6830 -0.1170 2.0856 28 1 12.2852 0.4370 1.3959 29 6 12.1202 -1.2254 2.6598 30 6 5.5101 -2.2723 -0.6125 31 1 -0.4850 0.8400 0.0004 32 1 3.8647 -0.3621 -0.0014 33 1 3.5860 -2.5161 2.1123 34 1 4.2876 -4.0437 1.4958 35 1 6.1820 -3.0512 2.6063 36 1 5.7211 -1.3953 2.0901 37 1 7.4211 -0.6921 0.6763 38 1 8.1669 -1.7235 -0.5678 39 1 8.5731 -2.9336 1.9514 40 1 9.7587 -3.5894 3.2046 41 1 13.4392 -3.2007 5.0835 42 1 14.5943 0.8577 2.4128 43 1 5.6434 -1.2321 -0.9098 44 1 5.6366 -2.9264 -1.4753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086701737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:51 Heat of formation + Delta-G solvation = 51.577882 kcal Electronic energy + Delta-G solvation = -26950.482226 eV Core-core repulsion = 23096.325358 eV Total energy + Delta-G solvation = -3854.156868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.92020 -40.16269 -38.82694 -38.27003 -35.22940 -33.80204 -33.43102 -31.83440 -31.03679 -30.45910 -29.12466 -27.71369 -25.52864 -24.17335 -23.54953 -22.86340 -22.52504 -21.05815 -20.09761 -19.40208 -19.05963 -18.15005 -17.70260 -17.53631 -16.51829 -16.17751 -15.75490 -15.52581 -15.32240 -15.14200 -14.72391 -14.51955 -14.30490 -13.89977 -13.65680 -13.36821 -13.14474 -13.03872 -12.76575 -12.43294 -11.93232 -11.41609 -11.38703 -11.10102 -10.90234 -10.83734 -10.79310 -10.66700 -10.51906 -10.40873 -10.40013 -10.02581 -9.89797 -9.63950 -9.60238 -9.36985 -8.92937 -8.89487 -7.27253 -5.78870 -3.14006 -0.12698 0.86848 1.96949 2.35286 2.63464 2.76600 3.35612 3.38614 3.40919 3.43870 3.56056 3.83096 4.00342 4.32338 4.45459 4.57211 4.57576 4.67047 4.72508 4.78165 4.90874 5.08955 5.34702 5.40111 5.43766 5.51943 5.58336 5.64815 5.67167 5.80239 5.86865 5.90293 5.95197 6.01443 6.14584 6.17013 6.25404 6.47706 6.59808 6.70785 6.76125 6.96050 7.08394 7.12559 7.42251 7.78432 7.99033 8.40891 9.19692 9.92450 10.12117 11.39547 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.002321 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.776903 B =12058.905891 C =12766.925227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.179 3.821 11 H 0.058 0.942 12 C -0.146 4.146 13 C -0.116 4.116 14 C -0.105 4.105 15 H 0.079 0.921 16 C 0.126 3.874 17 N -0.715 5.715 18 C 0.566 3.434 19 O -0.550 6.550 20 C -0.179 4.179 21 C 0.141 3.859 22 N -0.488 5.488 23 C 0.201 3.799 24 C -0.018 4.018 25 N -0.478 5.478 26 C 0.266 3.734 27 N -0.578 5.578 28 H 0.438 0.562 29 C 0.129 3.871 30 C -0.123 4.123 31 H 0.259 0.741 32 H 0.360 0.640 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.401 0.599 40 H 0.167 0.833 41 H 0.172 0.828 42 H 0.225 0.775 43 H 0.069 0.931 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.924 -5.338 5.616 29.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.069 3.931 11 H 0.076 0.924 12 C -0.186 4.186 13 C -0.153 4.153 14 C -0.124 4.124 15 H 0.098 0.902 16 C 0.003 3.997 17 N -0.365 5.365 18 C 0.352 3.648 19 O -0.429 6.429 20 C -0.188 4.188 21 C -0.011 4.011 22 N -0.198 5.198 23 C 0.035 3.965 24 C -0.139 4.139 25 N -0.197 5.197 26 C -0.022 4.022 27 N -0.189 5.189 28 H 0.280 0.720 29 C 0.007 3.993 30 C -0.162 4.162 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.184 0.816 41 H 0.189 0.811 42 H 0.241 0.759 43 H 0.087 0.913 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 29.263 -5.550 6.090 30.401 hybrid contribution -0.270 2.123 -1.090 2.402 sum 28.994 -3.427 5.000 29.621 Atomic orbital electron populations 1.69701 1.05097 1.25796 1.57604 1.24676 0.95223 0.97176 1.02127 0.86573 0.79206 0.85095 0.77774 1.21111 1.21798 1.20367 1.19091 0.80702 0.94660 1.42815 0.89198 1.42909 1.03955 1.01897 1.90025 1.20770 0.90073 0.89195 0.93014 0.92379 1.23091 0.95875 0.99156 1.00507 1.22542 0.96288 1.01275 0.95229 1.22277 0.93818 0.98749 0.97598 0.90225 1.21602 0.87372 0.98844 0.91888 1.45913 1.17374 1.31642 1.41602 1.17900 0.81612 0.83024 0.82246 1.90724 1.78817 1.26837 1.46542 1.19968 0.94399 1.00349 1.04049 1.22796 0.97856 0.91266 0.89185 1.67726 1.02102 1.30867 1.19083 1.22378 0.92588 0.87444 0.94044 1.20211 0.92636 1.00285 1.00777 1.70503 1.24768 1.04889 1.19571 1.25706 0.86118 0.99095 0.91238 1.43259 1.16449 1.23919 1.35273 0.71960 1.18695 0.94803 0.89866 0.95947 1.22489 0.94847 1.01927 0.96962 0.93082 0.80707 0.90653 0.92762 0.92582 0.91529 0.90904 0.91239 0.76323 0.81618 0.81073 0.75852 0.91278 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.15 13.97 55.49 0.78 -28.38 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.02 27.73 -169.99 -4.71 17.31 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 7 C -0.24 -6.69 10.44 -15.06 -0.16 -6.85 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 9 N -0.75 -16.94 4.88 -52.35 -0.26 -17.20 16 10 C 0.18 3.20 3.55 -66.82 -0.24 2.96 16 11 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 12 C -0.15 -2.29 6.54 -25.07 -0.16 -2.46 16 13 C -0.12 -1.46 6.19 -24.74 -0.15 -1.61 16 14 C -0.11 -1.16 2.89 -88.96 -0.26 -1.42 16 15 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 16 C 0.13 1.38 4.96 -4.04 -0.02 1.36 16 17 N -0.71 -6.72 5.40 -61.35 -0.33 -7.05 16 18 C 0.57 6.34 7.77 -12.47 -0.10 6.24 16 19 O -0.55 -7.65 15.52 5.29 0.08 -7.57 16 20 C -0.18 -1.78 5.89 -104.86 -0.62 -2.39 16 21 C 0.14 1.19 10.71 -17.08 -0.18 1.00 16 22 N -0.49 -4.48 10.30 -12.65 -0.13 -4.61 16 23 C 0.20 1.74 11.25 -17.12 -0.19 1.55 16 24 C -0.02 -0.18 7.27 -84.73 -0.62 -0.80 16 25 N -0.48 -4.43 11.28 -12.01 -0.14 -4.57 16 26 C 0.27 1.69 12.97 -89.56 -1.16 0.53 16 27 N -0.58 -4.61 6.02 -11.51 -0.07 -4.68 16 28 H 0.44 3.15 7.92 -40.82 -0.32 2.82 16 29 C 0.13 1.31 6.93 -83.81 -0.58 0.73 16 30 C -0.12 -1.72 6.14 -25.62 -0.16 -1.87 16 31 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 32 H 0.36 8.13 5.38 -40.82 -0.22 7.91 16 33 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.07 0.95 7.97 -51.93 -0.41 0.54 16 37 H 0.07 0.94 8.02 -51.93 -0.42 0.52 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.40 2.73 6.51 -40.82 -0.27 2.47 16 40 H 0.17 0.90 6.42 -52.49 -0.34 0.56 16 41 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 42 H 0.23 0.29 8.06 -52.49 -0.42 -0.13 16 43 H 0.07 1.03 7.31 -51.93 -0.38 0.65 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 363.69 15.07 5.48 5.48 Total: -1.00 -35.57 363.69 -9.73 -45.31 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.74 Total: 8.97 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -4.69 Total: -3.01 kcal Atomic # 7 Polarization: -66.34 SS G_CDS: -0.15 Total: -66.48 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.08 Total: -7.57 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.57 -9.73 -45.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086701737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.885 kcal (2) G-P(sol) polarization free energy of solvation -35.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds