Wall clock time and date at job start Tue Mar 31 2020 05:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99764 * 2 1 4 4 H 1.48508 * 109.47262 * 269.99737 * 3 2 1 5 5 H 1.48496 * 109.47531 * 30.00186 * 3 2 1 6 6 H 1.48508 * 109.46900 * 150.00240 * 3 2 1 7 7 C 1.38803 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00316 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00343 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00381 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.01818 * 33.61199 * 10 9 7 12 12 C 1.54269 * 110.03328 * 272.16511 * 10 9 7 13 13 C 1.54892 * 104.19863 * 264.32857 * 12 10 9 14 14 C 1.54890 * 102.74587 * 322.05426 * 13 12 10 15 15 H 1.08999 * 110.60117 * 279.21427 * 14 13 12 16 16 C 1.52999 * 110.48526 * 156.62158 * 14 13 12 17 17 N 1.46501 * 109.47110 * 70.22732 * 16 14 13 18 18 C 1.34774 * 120.00217 * 180.02562 * 17 16 14 19 19 O 1.21578 * 119.99770 * 359.97438 * 18 17 16 20 20 C 1.47684 * 120.00062 * 180.02562 * 18 17 16 21 21 C 1.39976 * 120.38283 * 0.02562 * 20 18 17 22 22 N 1.31391 * 121.15800 * 179.97438 * 21 20 18 23 23 C 1.32543 * 121.79305 * 0.03905 * 22 21 20 24 24 N 1.37583 * 133.56585 * 179.97438 * 23 22 21 25 25 H 0.97001 * 126.23253 * 359.95046 * 24 23 22 26 26 C 1.36169 * 107.52309 * 179.97438 * 24 23 22 27 27 N 1.30059 * 110.11347 * 0.22745 * 26 24 23 28 28 C 1.35777 * 109.43492 * 359.62448 * 27 26 24 29 29 C 1.39485 * 133.74750 * 180.10143 * 28 27 26 30 30 C 1.53878 * 110.03323 * 154.99992 * 10 9 7 31 31 H 0.97007 * 119.99984 * 0.02562 * 1 2 3 32 32 H 0.97005 * 119.99454 * 0.02562 * 9 7 2 33 33 H 1.09007 * 110.48331 * 23.00434 * 12 10 9 34 34 H 1.08995 * 110.48715 * 145.51422 * 12 10 9 35 35 H 1.08998 * 110.75242 * 203.74467 * 13 12 10 36 36 H 1.08995 * 110.75536 * 80.36531 * 13 12 10 37 37 H 1.08995 * 109.47356 * 310.22559 * 16 14 13 38 38 H 1.09000 * 109.46951 * 190.22730 * 16 14 13 39 39 H 0.97004 * 119.99756 * 359.97438 * 17 16 14 40 40 H 1.08003 * 119.42524 * 359.97438 * 21 20 18 41 41 H 1.08002 * 124.93838 * 179.97438 * 26 24 23 42 42 H 1.07999 * 120.97107 * 0.26772 * 29 28 27 43 43 H 1.08996 * 110.03213 * 0.02562 * 30 10 9 44 44 H 1.08991 * 110.03109 * 238.56695 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9833 -3.5534 0.5664 12 6 2.3697 -4.0870 -1.4489 13 6 1.2214 -5.0613 -1.8112 14 6 0.9996 -5.8353 -0.4880 15 1 1.7391 -6.6286 -0.3792 16 6 -0.4159 -6.4137 -0.4368 17 7 -0.5329 -7.5051 -1.4071 18 6 -1.6992 -8.1674 -1.5391 19 8 -2.6541 -7.8594 -0.8526 20 6 -1.8169 -9.2679 -2.5169 21 6 -0.7221 -9.6302 -3.3103 22 7 -0.8097 -10.6071 -4.1845 23 6 -1.9316 -11.2915 -4.3568 24 7 -2.2895 -12.3338 -5.1804 25 1 -1.7184 -12.7740 -5.8293 26 6 -3.5915 -12.6346 -4.9189 27 7 -4.0562 -11.8451 -3.9957 28 6 -3.0788 -10.9905 -3.5981 29 6 -3.0217 -9.9598 -2.6600 30 6 1.1870 -4.7684 0.6104 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.3612 -3.2232 -2.1137 34 1 3.3330 -4.5948 -1.4971 35 1 1.5268 -5.7388 -2.6085 36 1 0.3231 -4.5119 -2.0925 37 1 -1.1365 -5.6329 -0.6797 38 1 -0.6167 -6.7947 0.5645 39 1 0.2290 -7.7505 -1.9552 40 1 0.2111 -9.0973 -3.2020 41 1 -4.1573 -13.4126 -5.4099 42 1 -3.8841 -9.7037 -2.0625 43 1 0.2191 -4.3639 0.9065 44 1 1.6898 -5.2050 1.4732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086707502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:58 Heat of formation + Delta-G solvation = 54.316678 kcal Electronic energy + Delta-G solvation = -26502.789969 eV Core-core repulsion = 22648.751865 eV Total energy + Delta-G solvation = -3854.038105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.85039 -40.17675 -38.51706 -37.90929 -35.01347 -34.13995 -33.32398 -31.84695 -30.90489 -30.19015 -28.86783 -27.32380 -25.22375 -24.31252 -23.63786 -23.10524 -22.25432 -20.93101 -19.92504 -19.23515 -19.13278 -18.23615 -17.43020 -17.08232 -16.53715 -16.22764 -15.89306 -15.36473 -14.90729 -14.80726 -14.66380 -14.28343 -13.85074 -13.62815 -13.54052 -13.40462 -13.20993 -12.96689 -12.62773 -12.19462 -11.65307 -11.57968 -11.39825 -11.19386 -10.82787 -10.73763 -10.57705 -10.48559 -10.32787 -10.23717 -10.15854 -9.90919 -9.65829 -9.60009 -9.41762 -9.15041 -9.03946 -8.85915 -6.91074 -5.73813 -3.02111 0.27472 0.36933 1.99185 2.22709 2.65119 2.91268 3.44865 3.47877 3.50084 3.51887 3.58869 3.88014 4.17956 4.36395 4.46785 4.55774 4.61241 4.80753 4.94492 4.97436 5.10354 5.23029 5.53283 5.56990 5.58889 5.61917 5.73845 5.76136 5.92185 5.94217 6.02961 6.08954 6.13314 6.22471 6.35967 6.36488 6.48595 6.51235 6.67468 6.77178 6.93395 7.11993 7.12542 7.27431 7.34406 7.73426 8.04321 8.45475 9.56015 10.15850 10.49585 11.48723 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.028194 B = 0.001908 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.876741 B =14671.772624 C =14856.840875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.114 4.114 14 C -0.104 4.104 15 H 0.075 0.925 16 C 0.126 3.874 17 N -0.719 5.719 18 C 0.566 3.434 19 O -0.532 6.532 20 C -0.197 4.197 21 C 0.175 3.825 22 N -0.484 5.484 23 C 0.255 3.745 24 N -0.588 5.588 25 H 0.431 0.569 26 C 0.277 3.723 27 N -0.479 5.479 28 C -0.008 4.008 29 C 0.049 3.951 30 C -0.121 4.121 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.398 0.602 40 H 0.171 0.829 41 H 0.228 0.772 42 H 0.157 0.843 43 H 0.073 0.927 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.224 -28.816 -10.568 30.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.151 4.151 14 C -0.123 4.123 15 H 0.094 0.906 16 C 0.003 3.997 17 N -0.370 5.370 18 C 0.351 3.649 19 O -0.409 6.409 20 C -0.205 4.205 21 C 0.006 3.994 22 N -0.196 5.196 23 C 0.018 3.982 24 N -0.203 5.203 25 H 0.271 0.729 26 C -0.012 4.012 27 N -0.198 5.198 28 C -0.127 4.127 29 C 0.021 3.979 30 C -0.160 4.160 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.233 0.767 40 H 0.187 0.813 41 H 0.244 0.756 42 H 0.175 0.825 43 H 0.092 0.908 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.970 -28.656 -10.180 30.555 hybrid contribution 0.926 0.733 -0.644 1.345 sum -2.044 -27.923 -10.824 30.017 Atomic orbital electron populations 1.69666 1.05063 1.25595 1.57744 1.24740 0.95501 0.97654 1.03166 0.86216 0.78643 0.84027 0.77448 1.21827 1.21838 1.20822 1.19253 0.90994 0.84241 1.42489 0.91242 1.42547 1.05669 0.99698 1.88260 1.20803 0.94137 0.86094 0.92609 0.93392 1.23120 0.96010 0.98649 1.00911 1.22512 1.00039 0.97437 0.95122 1.22252 0.94572 0.97852 0.97613 0.90626 1.21599 0.97806 0.88403 0.91866 1.45926 1.13236 1.36049 1.41813 1.17779 0.83190 0.81500 0.82413 1.90823 1.37641 1.66792 1.45643 1.20704 0.95831 1.01337 1.02611 1.22744 0.97655 0.90667 0.88340 1.66396 1.24378 1.08050 1.20822 1.19152 0.92499 0.92364 0.94135 1.42902 1.13525 1.29141 1.34705 0.72897 1.25579 0.81143 0.99153 0.95282 1.70522 1.29393 1.06699 1.13189 1.19575 0.91594 1.00334 1.01239 1.20892 0.97417 0.88057 0.91510 1.22467 1.01510 0.95391 0.96646 0.93548 0.78247 0.90989 0.93324 0.92951 0.91212 0.90610 0.91274 0.76664 0.81254 0.75566 0.82492 0.90837 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.55 9.96 -15.06 -0.15 -6.70 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.64 5.08 -52.34 -0.27 -17.91 16 10 C 0.17 3.30 3.55 -66.81 -0.24 3.06 16 11 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 12 C -0.15 -2.43 6.54 -25.07 -0.16 -2.59 16 13 C -0.11 -1.55 6.19 -24.74 -0.15 -1.70 16 14 C -0.10 -1.27 2.89 -88.96 -0.26 -1.52 16 15 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 16 C 0.13 1.55 4.96 -4.04 -0.02 1.53 16 17 N -0.72 -7.44 5.40 -61.30 -0.33 -7.77 16 18 C 0.57 6.97 7.77 -12.40 -0.10 6.87 16 19 O -0.53 -8.64 16.40 5.30 0.09 -8.55 16 20 C -0.20 -2.05 5.89 -104.85 -0.62 -2.67 16 21 C 0.18 1.52 10.69 -17.09 -0.18 1.34 16 22 N -0.48 -4.69 10.36 -11.96 -0.12 -4.81 16 23 C 0.26 2.40 8.45 -155.63 -1.31 1.08 16 24 N -0.59 -3.14 6.20 -13.22 -0.08 -3.22 16 25 H 0.43 0.85 8.96 -40.82 -0.37 0.49 16 26 C 0.28 1.38 12.97 -89.70 -1.16 0.21 16 27 N -0.48 -4.58 11.29 -12.02 -0.14 -4.71 16 28 C -0.01 -0.08 7.23 -84.69 -0.61 -0.70 16 29 C 0.05 0.54 9.75 -38.58 -0.38 0.17 16 30 C -0.12 -1.86 6.14 -25.61 -0.16 -2.02 16 31 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.38 10.05 7.52 -40.82 -0.31 9.75 16 33 H 0.07 1.40 8.04 -51.93 -0.42 0.99 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.10 7.97 -51.93 -0.41 0.68 16 37 H 0.08 1.10 8.02 -51.93 -0.42 0.68 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.40 2.95 6.48 -40.82 -0.26 2.69 16 40 H 0.17 0.93 6.39 -52.48 -0.34 0.59 16 41 H 0.23 -0.10 8.06 -52.49 -0.42 -0.52 16 42 H 0.16 1.75 7.72 -52.49 -0.41 1.35 16 43 H 0.07 1.25 7.31 -51.93 -0.38 0.87 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -36.38 368.52 -11.00 -47.38 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.81 Total: 8.27 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -5.60 Total: -4.15 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -0.21 Total: -65.88 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.38 -11.00 -47.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086707502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.698 kcal (2) G-P(sol) polarization free energy of solvation -36.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds