Wall clock time and date at job start Tue Mar 31 2020 05:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99567 * 2 1 4 4 H 1.48506 * 109.46905 * 239.99735 * 3 2 1 5 5 H 1.48500 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47375 * 120.00185 * 3 2 1 7 7 C 1.38813 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99688 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99926 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99672 * 179.97438 * 9 7 2 11 11 H 1.09006 * 110.01777 * 33.60855 * 10 9 7 12 12 C 1.54261 * 110.03463 * 272.16560 * 10 9 7 13 13 C 1.54889 * 104.19565 * 264.32711 * 12 10 9 14 14 C 1.54881 * 102.74880 * 322.05606 * 13 12 10 15 15 H 1.09006 * 110.59851 * 279.20624 * 14 13 12 16 16 C 1.53003 * 110.48450 * 156.62400 * 14 13 12 17 17 N 1.46495 * 109.47513 * 70.22629 * 16 14 13 18 18 C 1.34773 * 119.99986 * 180.02562 * 17 16 14 19 19 O 1.21563 * 120.00281 * 359.97438 * 18 17 16 20 20 C 1.47764 * 120.00050 * 179.97438 * 18 17 16 21 21 C 1.39641 * 121.07215 * 0.02694 * 20 18 17 22 22 C 1.38338 * 119.37572 * 179.97438 * 21 20 18 23 23 N 1.31723 * 121.54965 * 359.97438 * 22 21 20 24 24 C 1.32118 * 121.94481 * 0.02562 * 23 22 21 25 25 N 1.37942 * 133.80450 * 180.02562 * 24 23 22 26 26 H 0.96999 * 126.36083 * 359.97438 * 25 24 23 27 27 C 1.35992 * 107.28424 * 179.97438 * 25 24 23 28 28 N 1.30284 * 110.05486 * 359.97438 * 27 25 24 29 29 C 1.34655 * 109.66864 * 0.02562 * 28 27 25 30 30 C 1.53881 * 110.03265 * 155.00024 * 10 9 7 31 31 H 0.96993 * 120.00282 * 0.02562 * 1 2 3 32 32 H 0.96998 * 120.00006 * 359.97438 * 9 7 2 33 33 H 1.09003 * 110.48481 * 23.00736 * 12 10 9 34 34 H 1.09003 * 110.49290 * 145.51374 * 12 10 9 35 35 H 1.09010 * 110.75306 * 203.73793 * 13 12 10 36 36 H 1.09006 * 110.75625 * 80.37563 * 13 12 10 37 37 H 1.09001 * 109.46871 * 310.22052 * 16 14 13 38 38 H 1.09007 * 109.46879 * 190.22628 * 16 14 13 39 39 H 0.96996 * 119.99672 * 359.97438 * 17 16 14 40 40 H 1.08003 * 120.31057 * 359.95135 * 21 20 18 41 41 H 1.08000 * 119.22714 * 179.97438 * 22 21 20 42 42 H 1.08003 * 124.97067 * 180.02562 * 27 25 24 43 43 H 1.08997 * 110.02810 * 0.02562 * 30 10 9 44 44 H 1.09002 * 110.03020 * 238.57325 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9835 -3.5533 0.5675 12 6 2.3700 -4.0870 -1.4477 13 6 1.2217 -5.0613 -1.8099 14 6 1.0000 -5.8353 -0.4868 15 1 1.7395 -6.6286 -0.3780 16 6 -0.4155 -6.4138 -0.4357 17 7 -0.5324 -7.5052 -1.4059 18 6 -1.6987 -8.1675 -1.5379 19 8 -2.6536 -7.8597 -0.8514 20 6 -1.8168 -9.2680 -2.5169 21 6 -0.7342 -9.6406 -3.3164 22 6 -0.8836 -10.6764 -4.2211 23 7 -2.0247 -11.3221 -4.3474 24 6 -3.0847 -11.0169 -3.6202 25 7 -4.3690 -11.5151 -3.5484 26 1 -4.7337 -12.2432 -4.0755 27 6 -5.0291 -10.7960 -2.6016 28 7 -4.2373 -9.8957 -2.0917 29 6 -3.0255 -9.9762 -2.6733 30 6 1.1872 -4.7684 0.6115 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 2.3614 -3.2232 -2.1125 34 1 3.3333 -4.5947 -1.4960 35 1 1.5272 -5.7389 -2.6074 36 1 0.3233 -4.5120 -2.0915 37 1 -1.1362 -5.6329 -0.6785 38 1 -0.6163 -6.7949 0.5657 39 1 0.2294 -7.7506 -1.9539 40 1 0.2107 -9.1248 -3.2294 41 1 -0.0449 -10.9623 -4.8386 42 1 -6.0587 -10.9493 -2.3138 43 1 0.2193 -4.3640 0.9076 44 1 1.6901 -5.2050 1.4744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086708861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:54 Heat of formation + Delta-G solvation = 60.337340 kcal Electronic energy + Delta-G solvation = -26793.067957 eV Core-core repulsion = 22939.290928 eV Total energy + Delta-G solvation = -3853.777029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.78621 -39.88280 -38.56791 -37.98818 -34.90378 -34.05763 -33.28108 -31.85150 -30.54111 -30.12888 -28.92421 -27.33705 -25.45051 -23.99646 -23.56957 -23.14359 -22.14683 -20.98823 -19.99918 -19.23526 -18.73656 -17.99374 -17.54145 -17.06940 -16.22738 -16.14288 -15.56431 -15.40302 -15.11531 -14.80013 -14.66302 -14.33089 -13.98542 -13.64105 -13.40172 -13.19657 -13.05247 -12.92630 -12.60073 -12.17465 -11.47116 -11.37200 -11.26483 -11.17842 -10.79591 -10.70653 -10.56418 -10.46706 -10.27476 -10.21343 -10.15594 -9.90887 -9.59294 -9.48260 -9.35440 -9.05294 -8.89784 -8.84370 -6.90049 -5.72451 -3.00847 0.02168 0.72692 2.10285 2.39359 2.76901 2.97279 3.46086 3.50556 3.51756 3.57207 3.69170 4.02081 4.27019 4.35135 4.51875 4.62291 4.70269 4.90757 4.97998 5.05580 5.13727 5.27942 5.42575 5.56642 5.58532 5.62454 5.76381 5.79533 5.94234 6.05045 6.08501 6.11719 6.15574 6.24889 6.37931 6.42090 6.50175 6.64187 6.68903 6.78802 6.94812 7.13512 7.34101 7.39200 7.43835 7.73874 8.15962 8.46801 9.57161 10.17162 10.50955 11.50075 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.024218 B = 0.002086 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.893927 B =13419.149119 C =13897.693932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.113 4.113 14 C -0.103 4.103 15 H 0.075 0.925 16 C 0.127 3.873 17 N -0.720 5.720 18 C 0.549 3.451 19 O -0.501 6.501 20 C -0.031 4.031 21 C -0.150 4.150 22 C 0.133 3.867 23 N -0.469 5.469 24 C 0.231 3.769 25 N -0.589 5.589 26 H 0.430 0.570 27 C 0.277 3.723 28 N -0.462 5.462 29 C 0.054 3.946 30 C -0.121 4.121 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.398 0.602 40 H 0.150 0.850 41 H 0.174 0.826 42 H 0.228 0.772 43 H 0.073 0.927 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -27.916 -9.007 29.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.151 4.151 14 C -0.122 4.122 15 H 0.093 0.907 16 C 0.004 3.996 17 N -0.373 5.373 18 C 0.333 3.667 19 O -0.375 6.375 20 C -0.044 4.044 21 C -0.173 4.173 22 C -0.033 4.033 23 N -0.182 5.182 24 C -0.006 4.006 25 N -0.204 5.204 26 H 0.270 0.730 27 C -0.010 4.010 28 N -0.180 5.180 29 C -0.070 4.070 30 C -0.160 4.160 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.232 0.768 40 H 0.167 0.833 41 H 0.191 0.809 42 H 0.244 0.756 43 H 0.092 0.908 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.033 -27.549 -8.364 29.227 hybrid contribution 0.562 0.503 -0.691 1.022 sum -4.471 -27.046 -9.054 28.870 Atomic orbital electron populations 1.69650 1.05071 1.25726 1.57655 1.24743 0.95492 0.97648 1.03154 0.86292 0.78511 0.83732 0.77781 1.21358 1.21761 1.21327 1.19208 0.90952 0.84246 1.42624 0.91296 1.42542 1.05673 0.99696 1.88270 1.20800 0.94117 0.86093 0.92601 0.93403 1.23119 0.95991 0.98639 1.00924 1.22507 1.00012 0.97411 0.95121 1.22240 0.94579 0.97803 0.97581 0.90682 1.21573 0.97719 0.88411 0.91864 1.45932 1.13273 1.36128 1.41945 1.17938 0.83435 0.82099 0.83208 1.90876 1.37113 1.65405 1.44108 1.19745 0.91461 0.96035 0.97127 1.22220 0.98947 0.99214 0.96886 1.22521 0.93298 0.91454 0.96030 1.66209 0.98234 1.29550 1.24202 1.18981 0.87719 0.96088 0.97794 1.42947 1.08739 1.32886 1.35838 0.72996 1.25813 0.99679 0.88429 0.87076 1.70394 1.00688 1.21022 1.25924 1.19240 0.93677 0.96990 0.97092 1.22469 1.01512 0.95404 0.96655 0.93485 0.78240 0.90993 0.93335 0.92990 0.91247 0.90727 0.91397 0.76751 0.83253 0.80905 0.75563 0.90845 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.61 9.96 -15.06 -0.15 -6.76 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.72 -17.86 5.08 -52.34 -0.27 -18.12 16 10 C 0.17 3.36 3.55 -66.81 -0.24 3.12 16 11 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 12 C -0.15 -2.46 6.54 -25.07 -0.16 -2.63 16 13 C -0.11 -1.59 6.19 -24.74 -0.15 -1.74 16 14 C -0.10 -1.31 2.89 -88.97 -0.26 -1.57 16 15 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 16 C 0.13 1.68 4.96 -4.04 -0.02 1.66 16 17 N -0.72 -8.24 5.40 -61.28 -0.33 -8.57 16 18 C 0.55 7.76 7.79 -12.37 -0.10 7.66 16 19 O -0.50 -9.28 16.19 5.31 0.09 -9.19 16 20 C -0.03 -0.37 5.93 -104.45 -0.62 -0.99 16 21 C -0.15 -1.17 9.60 -39.02 -0.37 -1.54 16 22 C 0.13 0.97 11.14 -17.56 -0.20 0.77 16 23 N -0.47 -4.51 10.35 -12.30 -0.13 -4.64 16 24 C 0.23 2.40 8.46 -155.64 -1.32 1.08 16 25 N -0.59 -3.93 6.23 -13.21 -0.08 -4.01 16 26 H 0.43 1.27 8.96 -40.82 -0.37 0.91 16 27 C 0.28 2.02 12.97 -89.68 -1.16 0.86 16 28 N -0.46 -5.97 10.63 -11.88 -0.13 -6.09 16 29 C 0.05 0.69 6.85 -84.62 -0.58 0.11 16 30 C -0.12 -1.92 6.14 -25.61 -0.16 -2.08 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.38 10.19 7.52 -40.82 -0.31 9.89 16 33 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.07 1.13 7.97 -51.93 -0.41 0.71 16 37 H 0.07 1.16 8.02 -51.93 -0.42 0.74 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.40 3.27 6.58 -40.82 -0.27 3.00 16 40 H 0.15 0.67 6.53 -52.48 -0.34 0.32 16 41 H 0.17 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.23 0.44 8.06 -52.48 -0.42 0.02 16 43 H 0.07 1.28 7.31 -51.93 -0.38 0.90 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -38.28 368.25 -11.01 -49.29 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.84 Total: 8.53 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -5.58 Total: -2.54 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -0.21 Total: -69.12 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.28 -11.01 -49.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086708861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.627 kcal (2) G-P(sol) polarization free energy of solvation -38.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds