Wall clock time and date at job start Tue Mar 31 2020 05:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99567 * 2 1 4 4 H 1.48506 * 109.46905 * 239.99735 * 3 2 1 5 5 H 1.48500 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47375 * 120.00185 * 3 2 1 7 7 C 1.38813 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99688 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99926 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99672 * 179.97438 * 9 7 2 11 11 H 1.09006 * 110.01777 * 33.60855 * 10 9 7 12 12 C 1.54261 * 110.03463 * 272.16560 * 10 9 7 13 13 C 1.54889 * 104.19565 * 264.32711 * 12 10 9 14 14 C 1.54881 * 102.74880 * 322.05606 * 13 12 10 15 15 H 1.09006 * 110.59851 * 279.20624 * 14 13 12 16 16 C 1.53003 * 110.48450 * 156.62400 * 14 13 12 17 17 N 1.46495 * 109.47513 * 70.22629 * 16 14 13 18 18 C 1.34773 * 119.99986 * 180.02562 * 17 16 14 19 19 O 1.21563 * 120.00281 * 359.97438 * 18 17 16 20 20 C 1.47764 * 120.00050 * 179.97438 * 18 17 16 21 21 C 1.39641 * 121.07215 * 0.02694 * 20 18 17 22 22 C 1.38338 * 119.37572 * 179.97438 * 21 20 18 23 23 N 1.31723 * 121.54965 * 359.97438 * 22 21 20 24 24 C 1.32118 * 121.94481 * 0.02562 * 23 22 21 25 25 N 1.37942 * 133.80450 * 180.02562 * 24 23 22 26 26 H 0.96999 * 126.36083 * 359.97438 * 25 24 23 27 27 C 1.35992 * 107.28424 * 179.97438 * 25 24 23 28 28 N 1.30284 * 110.05486 * 359.97438 * 27 25 24 29 29 C 1.34655 * 109.66864 * 0.02562 * 28 27 25 30 30 C 1.53881 * 110.03265 * 155.00024 * 10 9 7 31 31 H 0.96993 * 120.00282 * 0.02562 * 1 2 3 32 32 H 0.96998 * 120.00006 * 359.97438 * 9 7 2 33 33 H 1.09003 * 110.48481 * 23.00736 * 12 10 9 34 34 H 1.09003 * 110.49290 * 145.51374 * 12 10 9 35 35 H 1.09010 * 110.75306 * 203.73793 * 13 12 10 36 36 H 1.09006 * 110.75625 * 80.37563 * 13 12 10 37 37 H 1.09001 * 109.46871 * 310.22052 * 16 14 13 38 38 H 1.09007 * 109.46879 * 190.22628 * 16 14 13 39 39 H 0.96996 * 119.99672 * 359.97438 * 17 16 14 40 40 H 1.08003 * 120.31057 * 359.95135 * 21 20 18 41 41 H 1.08000 * 119.22714 * 179.97438 * 22 21 20 42 42 H 1.08003 * 124.97067 * 180.02562 * 27 25 24 43 43 H 1.08997 * 110.02810 * 0.02562 * 30 10 9 44 44 H 1.09002 * 110.03020 * 238.57325 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9835 -3.5533 0.5675 12 6 2.3700 -4.0870 -1.4477 13 6 1.2217 -5.0613 -1.8099 14 6 1.0000 -5.8353 -0.4868 15 1 1.7395 -6.6286 -0.3780 16 6 -0.4155 -6.4138 -0.4357 17 7 -0.5324 -7.5052 -1.4059 18 6 -1.6987 -8.1675 -1.5379 19 8 -2.6536 -7.8597 -0.8514 20 6 -1.8168 -9.2680 -2.5169 21 6 -0.7342 -9.6406 -3.3164 22 6 -0.8836 -10.6764 -4.2211 23 7 -2.0247 -11.3221 -4.3474 24 6 -3.0847 -11.0169 -3.6202 25 7 -4.3690 -11.5151 -3.5484 26 1 -4.7337 -12.2432 -4.0755 27 6 -5.0291 -10.7960 -2.6016 28 7 -4.2373 -9.8957 -2.0917 29 6 -3.0255 -9.9762 -2.6733 30 6 1.1872 -4.7684 0.6115 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 2.3614 -3.2232 -2.1125 34 1 3.3333 -4.5947 -1.4960 35 1 1.5272 -5.7389 -2.6074 36 1 0.3233 -4.5120 -2.0915 37 1 -1.1362 -5.6329 -0.6785 38 1 -0.6163 -6.7949 0.5657 39 1 0.2294 -7.7506 -1.9539 40 1 0.2107 -9.1248 -3.2294 41 1 -0.0449 -10.9623 -4.8386 42 1 -6.0587 -10.9493 -2.3138 43 1 0.2193 -4.3640 0.9076 44 1 1.6901 -5.2050 1.4744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086708861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:53 Heat of formation + Delta-G solvation = 32.240884 kcal Electronic energy + Delta-G solvation = -26794.286311 eV Core-core repulsion = 22939.290928 eV Total energy + Delta-G solvation = -3854.995383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.42675 -40.89683 -39.51694 -39.06164 -36.30025 -35.04137 -34.68280 -32.82900 -32.14090 -30.76007 -30.19575 -28.83341 -26.48940 -25.37716 -24.71593 -24.19250 -22.90689 -21.90797 -21.11427 -20.68832 -19.62918 -19.08929 -18.64298 -18.28062 -17.29637 -16.89382 -16.64568 -16.44529 -16.29165 -15.97029 -15.73689 -15.51177 -15.12631 -14.85050 -14.73049 -14.47828 -14.19840 -13.73038 -13.63282 -13.47810 -13.11407 -12.92198 -12.43652 -12.37166 -12.19611 -12.15618 -11.95186 -11.91593 -11.68863 -11.60442 -11.46926 -11.38400 -11.22062 -10.86401 -10.25175 -10.20749 -9.92114 -9.59648 -8.94188 -7.91234 -5.18740 -0.68956 0.10364 1.46893 1.50067 1.56133 1.58172 1.69091 1.92263 2.01581 2.58361 2.81501 3.14274 3.39876 3.43194 3.58181 3.69736 3.71115 3.82750 3.88477 4.00823 4.21686 4.23974 4.44418 4.47631 4.57423 4.62954 4.67023 4.72452 4.81317 4.83419 4.86857 4.95910 5.04353 5.11997 5.18126 5.26814 5.34652 5.47968 5.50885 5.54715 5.61562 5.71056 6.19129 6.32102 6.51067 6.73884 6.81103 7.19356 7.36354 8.17563 8.37782 9.32387 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.024218 B = 0.002086 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.893927 B =13419.149119 C =13897.693932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.278 1.278 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.735 5.735 10 C 0.161 3.839 11 H 0.045 0.955 12 C -0.138 4.138 13 C -0.107 4.107 14 C -0.082 4.082 15 H 0.116 0.884 16 C 0.135 3.865 17 N -0.701 5.701 18 C 0.547 3.453 19 O -0.559 6.559 20 C -0.068 4.068 21 C -0.126 4.126 22 C 0.134 3.866 23 N -0.476 5.476 24 C 0.214 3.786 25 N -0.573 5.573 26 H 0.447 0.553 27 C 0.297 3.703 28 N -0.531 5.531 29 C 0.020 3.980 30 C -0.118 4.118 31 H 0.249 0.751 32 H 0.369 0.631 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.037 0.963 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.417 0.583 40 H 0.187 0.813 41 H 0.218 0.782 42 H 0.274 0.726 43 H 0.047 0.953 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 -30.654 -10.611 32.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.274 4.274 3 Si 0.801 3.199 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.204 1.204 7 C -0.367 4.367 8 H 0.094 0.906 9 N -0.375 5.375 10 C 0.052 3.948 11 H 0.063 0.937 12 C -0.178 4.178 13 C -0.144 4.144 14 C -0.101 4.101 15 H 0.134 0.866 16 C 0.011 3.989 17 N -0.354 5.354 18 C 0.333 3.667 19 O -0.437 6.437 20 C -0.081 4.081 21 C -0.148 4.148 22 C -0.032 4.032 23 N -0.190 5.190 24 C -0.023 4.023 25 N -0.189 5.189 26 H 0.291 0.709 27 C 0.010 3.990 28 N -0.251 5.251 29 C -0.103 4.103 30 C -0.157 4.157 31 H 0.057 0.943 32 H 0.201 0.799 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.256 0.744 40 H 0.205 0.795 41 H 0.235 0.765 42 H 0.290 0.710 43 H 0.066 0.934 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.572 -30.369 -10.015 32.081 hybrid contribution -0.144 1.239 -0.218 1.267 sum -2.716 -29.129 -10.233 30.994 Atomic orbital electron populations 1.69827 1.06685 1.25893 1.60058 1.25570 0.96329 1.01151 1.04359 0.85232 0.77134 0.79347 0.78197 1.20365 1.22561 1.20373 1.19627 0.91431 0.85398 1.40221 0.90567 1.42783 1.05215 1.01110 1.88436 1.21162 0.94011 0.84948 0.94643 0.93696 1.22948 0.98723 0.98309 0.97859 1.22465 0.97639 0.97334 0.96989 1.22115 0.94945 0.97600 0.95392 0.86574 1.21326 0.97363 0.88115 0.92102 1.45682 1.13388 1.34934 1.41442 1.18399 0.83053 0.82318 0.82893 1.90836 1.39104 1.67265 1.46533 1.19785 0.93136 0.96579 0.98646 1.22645 0.98867 0.98502 0.94804 1.23331 0.93644 0.90489 0.95754 1.66343 0.98700 1.29943 1.24014 1.19202 0.89037 0.96202 0.97859 1.42951 1.07564 1.32884 1.35537 0.70921 1.26688 1.00568 0.86358 0.85409 1.70333 1.01972 1.24123 1.28649 1.19640 0.94150 0.98293 0.98252 1.22391 0.99677 0.95267 0.98379 0.94267 0.79923 0.94446 0.89987 0.88802 0.94370 0.93986 0.91887 0.74438 0.79547 0.76542 0.71029 0.93447 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.45 13.06 21.65 0.28 -61.16 16 2 C -0.08 -4.83 5.50 84.86 0.47 -4.37 16 3 Si 0.97 47.03 29.55 68.60 2.03 49.05 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.23 -13.16 9.96 84.03 0.84 -12.32 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.74 -37.42 5.08 -319.51 -1.62 -39.04 16 10 C 0.16 6.09 3.55 45.72 0.16 6.25 16 11 H 0.04 1.72 8.09 -2.38 -0.02 1.70 16 12 C -0.14 -4.40 6.54 31.67 0.21 -4.20 16 13 C -0.11 -2.76 6.19 31.88 0.20 -2.56 16 14 C -0.08 -1.88 2.89 -9.72 -0.03 -1.91 16 15 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 16 C 0.13 3.52 4.96 86.38 0.43 3.95 16 17 N -0.70 -15.07 5.40 -466.05 -2.52 -17.59 16 18 C 0.55 15.72 7.79 86.76 0.68 16.39 16 19 O -0.56 -22.06 16.19 -3.91 -0.06 -22.13 16 20 C -0.07 -1.61 5.93 -19.75 -0.12 -1.72 16 21 C -0.13 -1.59 9.60 22.63 0.22 -1.38 16 22 C 0.13 1.49 11.14 84.73 0.94 2.43 16 23 N -0.48 -8.13 10.35 -192.84 -2.00 -10.13 16 24 C 0.21 4.25 8.46 133.92 1.13 5.38 16 25 N -0.57 -6.94 6.23 -195.70 -1.22 -8.16 16 26 H 0.45 1.83 8.96 -92.71 -0.83 0.99 16 27 C 0.30 4.11 12.97 180.02 2.34 6.44 16 28 N -0.53 -14.22 10.63 -191.51 -2.04 -16.26 16 29 C 0.02 0.53 6.85 40.01 0.27 0.80 16 30 C -0.12 -3.64 6.14 31.32 0.19 -3.44 16 31 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.37 20.61 7.52 -92.71 -0.70 19.92 16 33 H 0.04 1.45 8.04 -2.39 -0.02 1.43 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.04 1.23 7.97 -2.38 -0.02 1.22 16 37 H 0.04 1.39 8.02 -2.39 -0.02 1.37 16 38 H 0.06 1.73 8.14 -2.38 -0.02 1.72 16 39 H 0.42 5.32 6.58 -92.71 -0.61 4.71 16 40 H 0.19 0.73 6.53 -2.91 -0.02 0.71 16 41 H 0.22 0.34 8.06 -2.91 -0.02 0.32 16 42 H 0.27 0.52 8.06 -2.91 -0.02 0.50 16 43 H 0.05 1.72 7.31 -2.39 -0.02 1.70 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -91.09 368.25 -0.29 -91.37 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -1.07 Total: 24.28 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 7.92 Total: 9.76 kcal Atomic # 7 Polarization: -143.23 SS G_CDS: -9.11 Total: -152.34 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.06 Total: -22.13 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Total: -91.09 -0.29 -91.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086708861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.616 kcal (2) G-P(sol) polarization free energy of solvation -91.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds