Wall clock time and date at job start Tue Mar 31 2020 05:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99750 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.67274 * 31.77236 * 10 9 7 12 12 C 1.54885 * 110.76220 * 268.32842 * 10 9 7 13 13 C 1.54263 * 104.19972 * 203.74728 * 12 10 9 14 14 C 1.53872 * 106.59900 * 23.61133 * 13 12 10 15 15 H 1.09008 * 110.03328 * 240.71741 * 14 13 12 16 16 C 1.52993 * 110.07347 * 119.30682 * 14 13 12 17 17 N 1.46507 * 109.47290 * 67.81104 * 16 14 13 18 18 C 1.34774 * 120.00199 * 180.02562 * 17 16 14 19 19 O 1.21591 * 120.00073 * 359.97438 * 18 17 16 20 20 C 1.47503 * 120.00002 * 179.97438 * 18 17 16 21 21 C 1.36885 * 120.61051 * 179.97438 * 20 18 17 22 22 C 1.40135 * 119.25472 * 179.97438 * 21 20 18 23 23 N 1.31136 * 120.46545 * 0.02562 * 22 21 20 24 24 C 1.33695 * 121.18714 * 359.97438 * 23 22 21 25 25 C 1.39074 * 132.55934 * 180.02562 * 24 23 22 26 26 C 1.38508 * 107.66571 * 179.30583 * 25 24 23 27 27 N 1.31531 * 109.03621 * 0.60697 * 26 25 24 28 28 N 1.37293 * 120.63690 * 359.74021 * 24 23 22 29 29 C 1.54264 * 106.59758 * 359.97438 * 14 13 12 30 30 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 32 32 H 1.08993 * 110.48700 * 322.43021 * 12 10 9 33 33 H 1.09004 * 110.48334 * 85.06845 * 12 10 9 34 34 H 1.09009 * 110.03267 * 264.32650 * 13 12 10 35 35 H 1.08998 * 110.07503 * 142.91787 * 13 12 10 36 36 H 1.09001 * 109.47395 * 187.80518 * 16 14 13 37 37 H 1.08996 * 109.47452 * 307.81141 * 16 14 13 38 38 H 0.97000 * 119.99541 * 359.97438 * 17 16 14 39 39 H 1.07997 * 120.37202 * 359.95501 * 21 20 18 40 40 H 1.08004 * 119.76092 * 179.97438 * 22 21 20 41 41 H 1.07993 * 126.16222 * 359.96268 * 25 24 23 42 42 H 1.07997 * 125.48040 * 180.02562 * 26 25 24 43 43 H 1.09005 * 110.48840 * 217.71210 * 29 14 13 44 44 H 1.08997 * 110.48668 * 95.06883 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0013 -3.5564 0.5375 12 6 2.2960 -4.1533 -1.4471 13 6 2.4851 -5.6771 -1.2982 14 6 1.7855 -6.0809 0.0114 15 1 2.5076 -6.5179 0.7012 16 6 0.6659 -7.0825 -0.2786 17 7 1.2480 -8.3467 -0.7362 18 6 0.4459 -9.3824 -1.0529 19 8 -0.7609 -9.2678 -0.9585 20 6 1.0320 -10.6550 -1.5142 21 6 0.2291 -11.7151 -1.8386 22 6 0.8161 -12.9107 -2.2742 23 7 2.1198 -13.0149 -2.3701 24 6 2.9210 -11.9912 -2.0580 25 6 4.3036 -11.8408 -2.0711 26 6 4.5898 -10.5494 -1.6604 27 7 3.4637 -9.9254 -1.3910 28 7 2.3959 -10.7964 -1.6317 29 6 1.1962 -4.7884 0.6129 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0042 32 1 1.4301 -3.9357 -2.0722 33 1 3.1934 -3.6965 -1.8644 34 1 3.5469 -5.9180 -1.2440 35 1 2.0275 -6.1950 -2.1410 36 1 0.0892 -7.2560 0.6299 37 1 0.0119 -6.6823 -1.0532 38 1 2.2108 -8.4380 -0.8119 39 1 -0.8447 -11.6311 -1.7595 40 1 0.1904 -13.7524 -2.5320 41 1 5.0235 -12.5919 -2.3606 42 1 5.5790 -10.1261 -1.5667 43 1 1.2906 -4.7953 1.6989 44 1 0.1525 -4.6729 0.3206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086715258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:26 Heat of formation + Delta-G solvation = 92.789705 kcal Electronic energy + Delta-G solvation = -27098.968345 eV Core-core repulsion = 23246.598555 eV Total energy + Delta-G solvation = -3852.369789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.84998 -40.10523 -38.59027 -38.07552 -35.14845 -34.56627 -33.37360 -31.54702 -30.78387 -29.63809 -29.14399 -27.49891 -26.11447 -24.35609 -23.81601 -23.07916 -22.40729 -21.11243 -19.83169 -19.39629 -18.87089 -17.89998 -17.42891 -17.11207 -16.74138 -16.23549 -15.92213 -15.63559 -14.99565 -14.91249 -14.78376 -14.13391 -13.98762 -13.79774 -13.48182 -13.40966 -13.17276 -12.93023 -12.81472 -12.25145 -11.88355 -11.74080 -11.66344 -11.17945 -10.95590 -10.79865 -10.78041 -10.60656 -10.56551 -10.34068 -10.26898 -10.14691 -10.06168 -9.84410 -9.66227 -9.32693 -8.87718 -8.48212 -6.94422 -5.76466 -3.05034 -0.40638 0.30508 1.39546 1.93960 2.45057 2.56446 2.97942 3.29972 3.43394 3.48466 3.50206 3.52582 3.97785 4.33273 4.49131 4.58540 4.69341 4.76213 4.89386 4.90429 4.99027 5.06263 5.26516 5.44517 5.48360 5.53696 5.63376 5.67224 5.79565 5.87382 5.93554 5.96179 6.01008 6.03231 6.16226 6.28716 6.32720 6.45458 6.56323 6.70722 6.80717 6.87480 7.01171 7.10545 7.18274 7.70659 7.73357 8.42438 9.53272 10.12036 10.46169 11.46183 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.026377 B = 0.002190 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.262295 B =12780.789477 C =13583.314756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.178 3.822 11 H 0.056 0.944 12 C -0.143 4.143 13 C -0.119 4.119 14 C -0.100 4.100 15 H 0.074 0.926 16 C 0.122 3.878 17 N -0.702 5.702 18 C 0.553 3.447 19 O -0.517 6.517 20 C 0.145 3.855 21 C -0.154 4.154 22 C 0.178 3.822 23 N -0.448 5.448 24 C 0.255 3.745 25 C -0.253 4.253 26 C 0.099 3.901 27 N -0.319 5.319 28 N -0.305 5.305 29 C -0.122 4.122 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.418 0.582 39 H 0.182 0.818 40 H 0.191 0.809 41 H 0.167 0.833 42 H 0.204 0.796 43 H 0.065 0.935 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.242 -29.134 -3.876 29.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.067 3.933 11 H 0.074 0.926 12 C -0.184 4.184 13 C -0.157 4.157 14 C -0.120 4.120 15 H 0.093 0.907 16 C -0.001 4.001 17 N -0.357 5.357 18 C 0.336 3.664 19 O -0.393 6.393 20 C 0.026 3.974 21 C -0.179 4.179 22 C -0.007 4.007 23 N -0.159 5.159 24 C 0.027 3.973 25 C -0.283 4.283 26 C -0.077 4.077 27 N -0.145 5.145 28 N -0.079 5.079 29 C -0.161 4.161 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.260 0.740 39 H 0.199 0.801 40 H 0.207 0.793 41 H 0.184 0.816 42 H 0.221 0.779 43 H 0.084 0.916 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.698 -28.340 -3.612 28.953 hybrid contribution 0.585 0.787 -0.175 0.996 sum 5.283 -27.552 -3.787 28.309 Atomic orbital electron populations 1.69662 1.05101 1.25648 1.57715 1.24752 0.95523 0.97714 1.03065 0.86198 0.78645 0.83899 0.77498 1.21756 1.21793 1.20775 1.19262 0.90995 0.84161 1.42604 0.91187 1.42388 1.05764 0.99777 1.88071 1.21148 0.94329 0.85564 0.92294 0.92577 1.23074 1.01374 0.92682 1.01284 1.22190 0.99582 0.97954 0.95975 1.21957 0.96376 0.95459 0.98175 0.90714 1.21750 0.96385 0.81721 1.00205 1.46438 1.12113 1.12568 1.64606 1.17535 0.86808 0.82643 0.79431 1.90883 1.12967 1.82105 1.53322 1.20886 0.79325 0.97687 0.99462 1.22223 1.03124 0.91707 1.00819 1.23502 0.90186 0.96814 0.90207 1.67980 1.05488 1.26683 1.15715 1.20796 0.95006 0.82275 0.99232 1.21080 0.90812 0.99437 1.17003 1.23873 0.97484 0.92476 0.93915 1.77338 0.92507 1.14372 1.30300 1.47419 1.05055 1.12283 1.43137 1.22612 1.00511 0.93192 0.99812 0.93513 0.78192 0.91857 0.92520 0.92265 0.92649 0.90899 0.90528 0.74025 0.80081 0.79264 0.81575 0.77934 0.91647 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.63 9.96 -15.06 -0.15 -6.78 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -18.02 5.23 -51.51 -0.27 -18.29 16 10 C 0.18 3.47 3.56 -65.95 -0.23 3.24 16 11 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 12 C -0.14 -2.52 6.51 -25.08 -0.16 -2.69 16 13 C -0.12 -1.65 6.19 -25.62 -0.16 -1.81 16 14 C -0.10 -1.32 2.96 -89.51 -0.26 -1.59 16 15 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 16 C 0.12 1.57 4.69 -4.04 -0.02 1.56 16 17 N -0.70 -8.64 5.34 -61.36 -0.33 -8.97 16 18 C 0.55 6.97 7.79 -12.49 -0.10 6.87 16 19 O -0.52 -7.58 16.36 5.29 0.09 -7.50 16 20 C 0.14 1.52 6.82 -81.98 -0.56 0.96 16 21 C -0.15 -1.11 9.61 -39.36 -0.38 -1.49 16 22 C 0.18 1.05 11.26 -17.14 -0.19 0.85 16 23 N -0.45 -3.97 10.44 -12.23 -0.13 -4.09 16 24 C 0.25 2.57 7.93 -155.56 -1.23 1.34 16 25 C -0.25 -2.08 10.91 -39.17 -0.43 -2.50 16 26 C 0.10 0.76 11.94 -17.58 -0.21 0.55 16 27 N -0.32 -3.33 9.92 30.46 0.30 -3.03 16 28 N -0.30 -3.29 3.94 -8.87 -0.03 -3.32 16 29 C -0.12 -1.96 5.98 -25.08 -0.15 -2.11 16 30 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.38 10.22 7.76 -40.82 -0.32 9.90 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.05 0.76 7.62 -51.93 -0.40 0.36 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.42 4.93 5.38 -40.82 -0.22 4.71 16 39 H 0.18 0.97 7.65 -52.49 -0.40 0.56 16 40 H 0.19 0.26 8.06 -52.48 -0.42 -0.16 16 41 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.20 0.77 8.06 -52.49 -0.42 0.34 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.17 7.73 -51.93 -0.40 0.77 16 LS Contribution 368.29 15.07 5.55 5.55 Total: -1.00 -34.25 368.29 -9.38 -43.63 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -5.93 Total: 10.28 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -4.33 Total: -4.12 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: 0.27 Total: -65.27 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.09 Total: -7.50 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.25 -9.38 -43.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086715258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.419 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds