Wall clock time and date at job start Tue Mar 31 2020 05:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99608 * 2 1 4 4 H 1.48504 * 109.46686 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47257 * 299.99595 * 3 2 1 6 6 H 1.48502 * 109.47253 * 60.00139 * 3 2 1 7 7 C 1.38803 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00861 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00143 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00429 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.01298 * 33.60769 * 10 9 7 12 12 C 1.54270 * 110.03234 * 272.16722 * 10 9 7 13 13 C 1.54891 * 104.19378 * 264.32205 * 12 10 9 14 14 C 1.54890 * 102.74950 * 322.06021 * 13 12 10 15 15 H 1.08996 * 110.59447 * 279.20688 * 14 13 12 16 16 C 1.52990 * 110.48603 * 156.62254 * 14 13 12 17 17 N 1.46496 * 109.47500 * 70.21987 * 16 14 13 18 18 C 1.34783 * 120.00177 * 179.97438 * 17 16 14 19 19 O 1.21563 * 120.00117 * 0.02562 * 18 17 16 20 20 C 1.47685 * 119.99919 * 180.02562 * 18 17 16 21 21 C 1.40190 * 120.40816 * 359.97438 * 20 18 17 22 22 N 1.31194 * 121.37213 * 180.02562 * 21 20 18 23 23 C 1.32927 * 121.84461 * 0.04771 * 22 21 20 24 24 N 1.36631 * 133.26792 * 180.02562 * 23 22 21 25 25 H 0.97002 * 125.34190 * 359.93630 * 24 23 22 26 26 N 1.39803 * 109.32003 * 179.97438 * 24 23 22 27 27 C 1.30198 * 110.13059 * 0.02562 * 26 24 23 28 28 C 1.41070 * 120.20433 * 359.95455 * 23 22 21 29 29 C 1.39502 * 120.41094 * 180.02562 * 20 18 17 30 30 C 1.53869 * 110.03505 * 154.99915 * 10 9 7 31 31 H 0.96998 * 120.00208 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99940 * 359.97438 * 9 7 2 33 33 H 1.09001 * 110.48658 * 23.00032 * 12 10 9 34 34 H 1.08999 * 110.48495 * 145.51000 * 12 10 9 35 35 H 1.08994 * 110.75210 * 203.74252 * 13 12 10 36 36 H 1.09000 * 110.75482 * 80.37339 * 13 12 10 37 37 H 1.09003 * 109.47204 * 310.21691 * 16 14 13 38 38 H 1.09002 * 109.47444 * 190.22476 * 16 14 13 39 39 H 0.97005 * 120.00086 * 0.02562 * 17 16 14 40 40 H 1.07997 * 119.31547 * 0.02720 * 21 20 18 41 41 H 1.07997 * 126.20534 * 180.25703 * 27 26 24 42 42 H 1.08007 * 121.02123 * 359.94870 * 29 20 18 43 43 H 1.09001 * 110.03188 * 359.97438 * 30 10 9 44 44 H 1.09000 * 110.03151 * 238.57077 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 2.9830 -3.5536 0.5661 12 6 2.3709 -4.0864 -1.4499 13 6 1.2229 -5.0606 -1.8134 14 6 1.0001 -5.8351 -0.4907 15 1 1.7395 -6.6285 -0.3818 16 6 -0.4153 -6.4136 -0.4409 17 7 -0.5315 -7.5045 -1.4118 18 6 -1.6975 -8.1674 -1.5442 19 8 -2.6529 -7.8599 -0.8583 20 6 -1.8145 -9.2675 -2.5226 21 6 -0.7184 -9.6289 -3.3183 22 7 -0.8014 -10.6026 -4.1936 23 6 -1.9236 -11.2926 -4.3709 24 7 -2.2665 -12.3275 -5.1944 25 1 -1.6771 -12.7520 -5.8373 26 7 -3.6005 -12.6780 -4.9659 27 6 -4.1120 -11.9163 -4.0421 28 6 -3.0711 -10.9895 -3.6083 29 6 -3.0174 -9.9591 -2.6671 30 6 1.1866 -4.7686 0.6082 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 2.3628 -3.2223 -2.1143 34 1 3.3343 -4.5940 -1.4975 35 1 1.5290 -5.7377 -2.6108 36 1 0.3248 -4.5111 -2.0953 37 1 -1.1358 -5.6326 -0.6839 38 1 -0.6169 -6.7950 0.5601 39 1 0.2309 -7.7501 -1.9589 40 1 0.2138 -9.0947 -3.2085 41 1 -5.1216 -11.9653 -3.6617 42 1 -3.8805 -9.7055 -2.0694 43 1 0.2188 -4.3642 0.9045 44 1 1.6888 -5.2057 1.4712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086729419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:10 Heat of formation + Delta-G solvation = 66.674256 kcal Electronic energy + Delta-G solvation = -26464.257918 eV Core-core repulsion = 22610.755678 eV Total energy + Delta-G solvation = -3853.502240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.10728 -40.06989 -38.43265 -37.88594 -35.03005 -33.66409 -33.33687 -31.23551 -31.16950 -30.34281 -28.88707 -27.32895 -25.09028 -24.39274 -23.57000 -23.10819 -22.37042 -20.95485 -19.94319 -19.23215 -18.89701 -18.08001 -17.17653 -17.09582 -16.36873 -15.98712 -15.84981 -15.35129 -14.99110 -14.78444 -14.62181 -14.20916 -13.86928 -13.64986 -13.58792 -13.44364 -13.22573 -12.99013 -12.64596 -12.20870 -11.74831 -11.42178 -11.24344 -11.21077 -10.86476 -10.76113 -10.59400 -10.50983 -10.43726 -10.25942 -10.17371 -9.94961 -9.81439 -9.65932 -9.62056 -9.23452 -8.94019 -8.87769 -6.92421 -5.75382 -3.03622 0.22218 0.34464 1.81919 1.87641 2.58066 2.93943 3.41399 3.43596 3.49312 3.51534 3.68458 3.82131 4.03161 4.29481 4.36479 4.59896 4.66692 4.77357 4.87850 4.94713 5.08530 5.11672 5.49128 5.55485 5.56939 5.58956 5.72004 5.74274 5.87640 5.90574 6.01023 6.07149 6.11446 6.20733 6.34008 6.34718 6.46925 6.48869 6.65958 6.74726 6.75508 6.91845 7.10733 7.29960 7.33518 7.72718 8.02334 8.43963 9.54631 10.14324 10.48058 11.47252 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027983 B = 0.001902 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.352429 B =14717.379833 C =14906.873943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.113 4.113 14 C -0.104 4.104 15 H 0.075 0.925 16 C 0.126 3.874 17 N -0.720 5.720 18 C 0.567 3.433 19 O -0.536 6.536 20 C -0.230 4.230 21 C 0.207 3.793 22 N -0.505 5.505 23 C 0.331 3.669 24 N -0.491 5.491 25 H 0.446 0.554 26 N -0.237 5.237 27 C 0.101 3.899 28 C -0.238 4.238 29 C 0.073 3.927 30 C -0.121 4.121 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.398 0.602 40 H 0.170 0.830 41 H 0.207 0.793 42 H 0.157 0.843 43 H 0.073 0.927 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 -26.415 -7.716 27.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.151 4.151 14 C -0.123 4.123 15 H 0.094 0.906 16 C 0.004 3.996 17 N -0.371 5.371 18 C 0.353 3.647 19 O -0.413 6.413 20 C -0.237 4.237 21 C 0.036 3.964 22 N -0.220 5.220 23 C 0.090 3.910 24 N -0.209 5.209 25 H 0.292 0.708 26 N -0.049 5.049 27 C -0.098 4.098 28 C -0.248 4.248 29 C 0.045 3.955 30 C -0.160 4.160 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.233 0.767 40 H 0.187 0.813 41 H 0.224 0.776 42 H 0.175 0.825 43 H 0.092 0.908 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.815 -27.295 -8.567 28.861 hybrid contribution 0.377 1.482 0.285 1.556 sum -3.438 -25.812 -8.281 27.325 Atomic orbital electron populations 1.69668 1.05068 1.25492 1.57836 1.24740 0.95502 0.97663 1.03175 0.86148 0.78776 0.84304 0.77149 1.20603 1.21958 1.21934 1.19301 0.91032 0.84222 1.42356 0.91176 1.42554 1.05668 0.99711 1.88254 1.20804 0.94135 0.86090 0.92620 0.93390 1.23119 0.96016 0.98654 1.00901 1.22510 1.00034 0.97433 0.95117 1.22247 0.94584 0.97851 0.97614 0.90640 1.21588 0.97791 0.88421 0.91839 1.45937 1.13283 1.36070 1.41841 1.17785 0.83130 0.81433 0.82341 1.90808 1.37636 1.66997 1.45899 1.20715 0.96383 1.02656 1.03964 1.22894 0.97439 0.89334 0.86717 1.66715 1.24391 1.09030 1.21843 1.19200 0.90769 0.90024 0.90986 1.45865 1.09817 1.29315 1.35861 0.70797 1.76761 0.89847 1.20966 1.17370 1.25211 0.99638 0.91436 0.93533 1.20489 0.95883 1.03734 1.04690 1.21213 0.97025 0.87185 0.90107 1.22464 1.01507 0.95399 0.96642 0.93594 0.78259 0.90982 0.93318 0.92960 0.91223 0.90643 0.91316 0.76717 0.81324 0.77598 0.82540 0.90844 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.90 22.28 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.49 9.96 -15.06 -0.15 -6.64 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.49 5.08 -52.34 -0.27 -17.76 16 10 C 0.17 3.26 3.55 -66.81 -0.24 3.03 16 11 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 12 C -0.15 -2.40 6.54 -25.07 -0.16 -2.57 16 13 C -0.11 -1.52 6.19 -24.74 -0.15 -1.67 16 14 C -0.10 -1.24 2.89 -88.97 -0.26 -1.49 16 15 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 16 C 0.13 1.50 4.96 -4.05 -0.02 1.48 16 17 N -0.72 -7.06 5.40 -61.31 -0.33 -7.39 16 18 C 0.57 6.48 7.77 -12.40 -0.10 6.38 16 19 O -0.54 -8.12 16.40 5.31 0.09 -8.04 16 20 C -0.23 -2.12 5.89 -104.84 -0.62 -2.74 16 21 C 0.21 1.66 10.69 -17.09 -0.18 1.48 16 22 N -0.51 -4.73 10.37 -12.02 -0.12 -4.86 16 23 C 0.33 3.05 8.47 -156.09 -1.32 1.73 16 24 N -0.49 -3.81 7.33 31.15 0.23 -3.58 16 25 H 0.45 2.37 8.96 -182.82 -1.64 0.73 16 26 N -0.24 -1.88 12.54 31.87 0.40 -1.48 16 27 C 0.10 0.65 12.30 -15.15 -0.19 0.47 16 28 C -0.24 -1.99 6.36 -105.20 -0.67 -2.66 16 29 C 0.07 0.63 9.76 -38.58 -0.38 0.25 16 30 C -0.12 -1.83 6.14 -25.62 -0.16 -1.99 16 31 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.38 9.96 7.52 -40.82 -0.31 9.65 16 33 H 0.07 1.39 8.04 -51.93 -0.42 0.98 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 1.08 7.97 -51.93 -0.41 0.66 16 37 H 0.08 1.06 8.02 -51.93 -0.42 0.64 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.40 2.78 6.48 -40.82 -0.26 2.51 16 40 H 0.17 0.85 6.39 -52.49 -0.34 0.51 16 41 H 0.21 0.50 8.06 -52.49 -0.42 0.07 16 42 H 0.16 1.18 7.72 -52.48 -0.41 0.77 16 43 H 0.07 1.22 7.31 -51.93 -0.38 0.84 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -34.50 369.41 -10.50 -45.01 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.08 Total: 8.01 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -4.69 Total: -5.45 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 0.63 Total: -62.34 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.04 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.50 -10.50 -45.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086729419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.680 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds