Wall clock time and date at job start Tue Mar 31 2020 05:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00099 * 2 1 4 4 H 1.48505 * 109.47142 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47034 * 299.99620 * 3 2 1 6 6 H 1.48500 * 109.47186 * 59.99933 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99695 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00078 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99868 * 179.97438 * 9 7 2 11 11 H 1.08995 * 110.67347 * 36.77769 * 10 9 7 12 12 C 1.54891 * 110.75455 * 273.54262 * 10 9 7 13 13 C 1.54263 * 104.19797 * 203.55795 * 12 10 9 14 14 C 1.53883 * 106.59596 * 23.61646 * 13 12 10 15 15 H 1.09002 * 110.02919 * 240.66772 * 14 13 12 16 16 C 1.52993 * 110.03186 * 119.28353 * 14 13 12 17 17 N 1.46496 * 109.47551 * 66.45518 * 16 14 13 18 18 C 1.34777 * 120.00258 * 180.02562 * 17 16 14 19 19 O 1.21543 * 120.00110 * 359.97438 * 18 17 16 20 20 C 1.47976 * 119.99871 * 180.02562 * 18 17 16 21 21 C 1.39731 * 119.42994 * 179.97438 * 20 18 17 22 22 C 1.36990 * 119.60597 * 179.97438 * 21 20 18 23 23 C 1.39895 * 118.35231 * 359.97438 * 22 21 20 24 24 N 1.35438 * 133.80735 * 179.97438 * 23 22 21 25 25 C 1.30212 * 109.57838 * 180.02562 * 24 23 22 26 26 N 1.35998 * 110.17814 * 0.02562 * 25 24 23 27 27 H 0.97000 * 126.29636 * 179.97438 * 26 25 24 28 28 C 1.37943 * 107.41562 * 0.02562 * 26 25 24 29 29 N 1.31885 * 133.83308 * 180.31183 * 28 26 25 30 30 C 1.54266 * 106.59679 * 359.97438 * 14 13 12 31 31 H 0.97004 * 119.99486 * 0.02562 * 1 2 3 32 32 H 0.97005 * 119.99746 * 359.97438 * 9 7 2 33 33 H 1.09003 * 110.48384 * 84.88341 * 12 10 9 34 34 H 1.08998 * 110.60273 * 322.30201 * 12 10 9 35 35 H 1.09000 * 110.03837 * 264.32973 * 13 12 10 36 36 H 1.08999 * 110.03108 * 142.89518 * 13 12 10 37 37 H 1.09000 * 109.47250 * 306.45296 * 16 14 13 38 38 H 1.09004 * 109.46862 * 186.45320 * 16 14 13 39 39 H 0.96999 * 119.99694 * 359.97438 * 17 16 14 40 40 H 1.08007 * 120.19408 * 359.97438 * 21 20 18 41 41 H 1.07994 * 120.82274 * 179.97438 * 22 21 20 42 42 H 1.07993 * 124.91360 * 179.97438 * 25 24 23 43 43 H 1.09000 * 110.48054 * 95.06791 * 30 14 13 44 44 H 1.08992 * 110.48544 * 217.70982 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9578 -3.5816 0.6111 12 6 2.4100 -4.0874 -1.4451 13 6 2.5943 -5.6160 -1.3503 14 6 1.7970 -6.0793 -0.1184 15 1 2.4653 -6.5467 0.6048 16 6 0.7081 -7.0678 -0.5403 17 7 1.3305 -8.2969 -1.0382 18 6 0.5604 -9.3157 -1.4688 19 8 -0.6506 -9.2149 -1.4437 20 6 1.1892 -10.5574 -1.9712 21 6 0.3794 -11.6064 -2.4143 22 6 0.9577 -12.7574 -2.8806 23 6 2.3541 -12.8401 -2.8963 24 7 3.2324 -13.7977 -3.2786 25 6 4.4491 -13.3749 -3.0882 26 7 4.4332 -12.1174 -2.5703 27 1 5.2081 -11.5818 -2.3390 28 6 3.1123 -11.7440 -2.4334 29 7 2.5119 -10.6537 -1.9975 30 6 1.1566 -4.8159 0.4927 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 3.3349 -3.6111 -1.7705 34 1 1.5958 -3.8428 -2.1271 35 1 3.6497 -5.8579 -1.2246 36 1 2.2054 -6.0954 -2.2487 37 1 0.0997 -6.6237 -1.3282 38 1 0.0775 -7.3016 0.3175 39 1 2.2970 -8.3772 -1.0586 40 1 -0.6961 -11.5103 -2.3893 41 1 0.3507 -13.5805 -3.2274 42 1 5.3419 -13.9411 -3.3088 43 1 0.1382 -4.6888 0.1254 44 1 1.1664 -4.8716 1.5811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086730254.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:01 Heat of formation + Delta-G solvation = 53.082567 kcal Electronic energy + Delta-G solvation = -26472.268539 eV Core-core repulsion = 22618.176919 eV Total energy + Delta-G solvation = -3854.091620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.86191 -40.23815 -38.56403 -37.84201 -35.03471 -34.24763 -33.36583 -31.78453 -30.94168 -30.33605 -28.93758 -27.31628 -25.49775 -24.28013 -23.45978 -23.02232 -22.15357 -21.06649 -19.82959 -19.42751 -19.10000 -18.28544 -17.63807 -17.07608 -16.32667 -16.17086 -15.70111 -15.47603 -15.17173 -14.90683 -14.86754 -14.25275 -13.82179 -13.66126 -13.45934 -13.26966 -13.07365 -12.83976 -12.60025 -12.15747 -11.85122 -11.76508 -11.62309 -11.13101 -10.89244 -10.79447 -10.59833 -10.56729 -10.43403 -10.26052 -10.11838 -9.84896 -9.71859 -9.64382 -9.43977 -9.22925 -8.97735 -8.86864 -6.92951 -5.75675 -3.04096 -0.03469 0.74128 1.94209 2.01821 2.64396 2.92421 3.43450 3.48520 3.48862 3.51260 3.51445 3.81396 4.08455 4.49331 4.55523 4.59404 4.61686 4.82120 4.94090 5.07365 5.12631 5.25692 5.52733 5.54722 5.56329 5.57680 5.69787 5.73413 5.89982 5.97518 6.02439 6.04119 6.06856 6.22278 6.33819 6.35935 6.46770 6.48686 6.58129 6.73367 6.88176 7.07335 7.12920 7.13205 7.42074 7.71978 7.99556 8.43360 9.54211 10.13361 10.47425 11.47073 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027426 B = 0.001925 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.669705 B =14540.292647 C =15282.824269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.052 0.948 12 C -0.143 4.143 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.074 0.926 16 C 0.123 3.877 17 N -0.704 5.704 18 C 0.570 3.430 19 O -0.528 6.528 20 C 0.123 3.877 21 C -0.124 4.124 22 C -0.026 4.026 23 C 0.022 3.978 24 N -0.492 5.492 25 C 0.287 3.713 26 N -0.588 5.588 27 H 0.432 0.568 28 C 0.235 3.765 29 N -0.453 5.453 30 C -0.121 4.121 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.410 0.590 40 H 0.160 0.840 41 H 0.150 0.850 42 H 0.228 0.772 43 H 0.070 0.930 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.073 -29.861 -5.156 31.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.066 3.934 11 H 0.070 0.930 12 C -0.184 4.184 13 C -0.158 4.158 14 C -0.120 4.120 15 H 0.092 0.908 16 C 0.001 3.999 17 N -0.355 5.355 18 C 0.354 3.646 19 O -0.404 6.404 20 C -0.025 4.025 21 C -0.147 4.147 22 C -0.053 4.053 23 C -0.099 4.099 24 N -0.211 5.211 25 C -0.001 4.001 26 N -0.202 5.202 27 H 0.272 0.728 28 C -0.003 4.003 29 N -0.169 5.169 30 C -0.160 4.160 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.245 0.755 40 H 0.177 0.823 41 H 0.168 0.832 42 H 0.244 0.756 43 H 0.089 0.911 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.568 -29.706 -5.155 31.344 hybrid contribution 1.022 1.208 0.017 1.582 sum 9.590 -28.498 -5.137 30.504 Atomic orbital electron populations 1.69673 1.05083 1.25511 1.57813 1.24755 0.95527 0.97704 1.03136 0.86132 0.78755 0.84227 0.77166 1.20601 1.21913 1.21903 1.19289 0.91013 0.84155 1.42416 0.91169 1.42390 1.05772 0.99776 1.88182 1.21144 0.93883 0.85584 0.92745 0.92984 1.23068 1.01297 0.92684 1.01344 1.22211 0.98974 0.97888 0.96777 1.21958 0.96404 0.95638 0.97965 0.90773 1.21673 0.95745 0.83020 0.99499 1.45928 1.11000 1.15388 1.63204 1.17697 0.86368 0.82336 0.78222 1.90829 1.13118 1.81083 1.55329 1.20974 0.87157 0.95510 0.98886 1.21610 1.02550 0.92133 0.98429 1.20495 0.90745 0.98062 0.96040 1.19903 0.95013 0.92107 1.02886 1.70472 0.98785 1.28895 1.22984 1.25601 0.98308 0.82458 0.93713 1.42905 1.06154 1.16517 1.54670 0.72772 1.18855 0.85973 0.93056 1.02449 1.66177 1.11007 1.23831 1.15904 1.22562 1.00160 0.93406 0.99879 0.93570 0.78180 0.92658 0.91790 0.92471 0.92381 0.90719 0.91105 0.75463 0.82288 0.83181 0.75603 0.91099 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.59 9.98 -15.06 -0.15 -6.74 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -18.01 5.26 -51.51 -0.27 -18.28 16 10 C 0.18 3.44 3.53 -65.95 -0.23 3.21 16 11 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 12 C -0.14 -2.50 6.51 -25.07 -0.16 -2.66 16 13 C -0.12 -1.60 6.13 -25.61 -0.16 -1.75 16 14 C -0.10 -1.26 2.98 -89.50 -0.27 -1.53 16 15 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 16 C 0.12 1.54 4.70 -4.05 -0.02 1.52 16 17 N -0.70 -8.07 5.28 -61.21 -0.32 -8.39 16 18 C 0.57 7.24 7.80 -12.27 -0.10 7.14 16 19 O -0.53 -8.15 16.29 5.33 0.09 -8.06 16 20 C 0.12 1.36 6.74 -82.97 -0.56 0.80 16 21 C -0.12 -1.16 9.55 -39.48 -0.38 -1.53 16 22 C -0.03 -0.22 10.16 -39.41 -0.40 -0.62 16 23 C 0.02 0.21 7.25 -84.57 -0.61 -0.40 16 24 N -0.49 -4.16 11.27 -11.93 -0.13 -4.30 16 25 C 0.29 1.28 12.96 -89.74 -1.16 0.11 16 26 N -0.59 -3.05 6.22 -13.21 -0.08 -3.13 16 27 H 0.43 0.94 8.96 -40.82 -0.37 0.57 16 28 C 0.23 2.16 8.46 -155.74 -1.32 0.84 16 29 N -0.45 -4.69 9.54 -8.82 -0.08 -4.77 16 30 C -0.12 -1.91 5.97 -25.08 -0.15 -2.06 16 31 H 0.25 7.46 8.31 -40.82 -0.34 7.13 16 32 H 0.38 10.22 7.73 -40.82 -0.32 9.90 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.75 7.58 -51.93 -0.39 0.36 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.41 4.13 7.61 -40.82 -0.31 3.82 16 40 H 0.16 1.32 7.61 -52.48 -0.40 0.93 16 41 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.23 -0.20 8.06 -52.49 -0.42 -0.62 16 43 H 0.07 1.17 7.74 -51.93 -0.40 0.77 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -35.43 370.62 -11.24 -46.68 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.96 Total: 9.02 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -5.76 Total: -4.21 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -0.17 Total: -66.44 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.43 -11.24 -46.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086730254.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.758 kcal (2) G-P(sol) polarization free energy of solvation -35.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds