Wall clock time and date at job start Tue Mar 31 2020 05:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00183 * 2 1 4 4 H 1.48495 * 109.47061 * 269.99731 * 3 2 1 5 5 H 1.48496 * 109.47059 * 29.99597 * 3 2 1 6 6 H 1.48504 * 109.47107 * 149.99706 * 3 2 1 7 7 C 1.38812 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00269 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99934 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00323 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.01721 * 34.93730 * 10 9 7 12 12 C 1.53872 * 110.03050 * 273.54733 * 10 9 7 13 13 C 1.54266 * 106.59640 * 240.66305 * 12 10 9 14 14 C 1.54887 * 104.19888 * 336.38805 * 13 12 10 15 15 H 1.09000 * 110.75698 * 279.63123 * 14 13 12 16 16 C 1.53001 * 110.75563 * 156.25362 * 14 13 12 17 17 N 1.46503 * 109.47012 * 66.46010 * 16 14 13 18 18 C 1.34775 * 119.99907 * 179.97438 * 17 16 14 19 19 O 1.21447 * 120.00039 * 359.97438 * 18 17 16 20 20 C 1.48636 * 119.99879 * 179.97438 * 18 17 16 21 21 N 1.33508 * 120.60272 * 0.02562 * 20 18 17 22 22 C 1.30808 * 122.65612 * 179.97438 * 21 20 18 23 23 N 1.34048 * 123.37865 * 359.97438 * 22 21 20 24 24 H 0.97003 * 120.21694 * 179.97438 * 23 22 21 25 25 C 1.36864 * 119.57416 * 0.02562 * 23 22 21 26 26 N 1.31637 * 135.95622 * 180.02562 * 25 23 22 27 27 C 1.33534 * 110.83094 * 179.30707 * 26 25 23 28 28 C 1.36078 * 110.92796 * 0.62877 * 27 26 25 29 29 C 1.39540 * 120.60260 * 179.72073 * 20 18 17 30 30 C 1.54266 * 110.07573 * 156.35353 * 10 9 7 31 31 H 0.96998 * 119.99668 * 0.02562 * 1 2 3 32 32 H 0.97005 * 119.99707 * 359.97438 * 9 7 2 33 33 H 1.09003 * 110.03622 * 121.37821 * 12 10 9 34 34 H 1.09003 * 110.07498 * 359.96668 * 12 10 9 35 35 H 1.09001 * 110.48620 * 95.07012 * 13 12 10 36 36 H 1.09004 * 110.48798 * 217.70845 * 13 12 10 37 37 H 1.09007 * 109.46629 * 186.45584 * 16 14 13 38 38 H 1.08990 * 109.47676 * 306.45515 * 16 14 13 39 39 H 0.97000 * 119.99886 * 359.97438 * 17 16 14 40 40 H 1.08000 * 118.30628 * 179.97438 * 22 21 20 41 41 H 1.07999 * 124.53445 * 180.12684 * 27 26 25 42 42 H 1.07998 * 126.72429 * 179.48048 * 28 27 26 43 43 H 1.09002 * 110.48438 * 261.59441 * 30 10 9 44 44 H 1.08998 * 110.48431 * 24.10269 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5718 -3.2137 -0.5858 12 6 4.2977 -2.9724 1.4439 13 6 5.8184 -3.0545 1.6898 14 6 6.4254 -3.1966 0.2719 15 1 6.3546 -4.2268 -0.0771 16 6 7.8773 -2.7144 0.2528 17 7 8.7001 -3.6102 1.0693 18 6 10.0217 -3.3801 1.1990 19 8 10.5306 -2.4304 0.6386 20 6 10.8564 -4.2886 2.0279 21 7 10.3097 -5.3364 2.6488 22 6 11.0060 -6.1615 3.3873 23 7 12.3251 -6.0361 3.5900 24 1 12.7964 -6.6750 4.1473 25 6 13.0027 -5.0000 3.0063 26 7 14.2495 -4.5786 2.9830 27 6 14.3685 -3.4893 2.2198 28 6 13.1643 -3.1256 1.7008 29 6 12.2269 -4.0655 2.1662 30 6 5.5266 -2.2657 -0.5795 31 1 -0.4849 0.8401 -0.0004 32 1 3.8646 -0.3621 0.0007 33 1 3.8473 -3.9586 1.5573 34 1 3.8434 -2.2720 2.1448 35 1 6.1771 -2.1434 2.1687 36 1 6.0601 -3.9265 2.2974 37 1 8.2469 -2.7154 -0.7727 38 1 7.9298 -1.7036 0.6569 39 1 8.2937 -4.3690 1.5166 40 1 10.4916 -6.9863 3.8579 41 1 15.2948 -2.9624 2.0450 42 1 12.9669 -2.2810 1.0574 43 1 5.5553 -2.5623 -1.6280 44 1 5.8371 -1.2268 -0.4692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086745874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:22 Heat of formation + Delta-G solvation = 71.867421 kcal Electronic energy + Delta-G solvation = -26708.309614 eV Core-core repulsion = 22855.032567 eV Total energy + Delta-G solvation = -3853.277048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.35517 -39.92826 -39.10590 -38.25928 -35.54511 -35.16151 -33.40199 -31.12536 -30.91678 -29.65198 -29.14715 -27.70801 -26.10372 -24.23578 -23.90604 -22.71817 -21.70902 -21.04980 -20.22039 -19.30747 -18.94052 -18.55289 -17.53275 -17.40904 -16.69294 -16.35960 -16.18447 -15.65852 -15.17408 -14.88485 -14.65102 -14.29466 -13.90426 -13.55642 -13.49074 -13.32242 -13.00945 -12.76711 -12.69093 -12.44294 -12.09897 -11.94763 -11.50459 -11.16670 -10.90894 -10.83209 -10.66273 -10.55042 -10.45897 -10.33582 -10.29031 -10.01455 -9.84582 -9.57740 -9.30321 -9.05753 -8.90785 -8.32027 -7.24885 -5.76517 -3.11667 -0.74952 0.89049 1.67676 2.22550 2.61634 2.97637 3.22852 3.23900 3.38694 3.41921 3.46647 3.64916 4.04032 4.31610 4.46673 4.59929 4.69456 4.79524 4.87451 4.95758 5.06836 5.36338 5.48440 5.55137 5.57835 5.61542 5.65210 5.84048 5.84315 5.92737 5.96597 5.97409 6.05257 6.12868 6.19594 6.21766 6.27570 6.51376 6.56809 6.60530 6.80119 6.87251 7.03779 7.26356 7.49033 7.84410 8.01231 8.43247 9.22106 9.94952 10.14702 11.41865 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.026268 B = 0.002092 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.665726 B =13384.110874 C =14002.016040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.747 5.747 10 C 0.180 3.820 11 H 0.058 0.942 12 C -0.145 4.145 13 C -0.116 4.116 14 C -0.105 4.105 15 H 0.083 0.917 16 C 0.124 3.876 17 N -0.701 5.701 18 C 0.563 3.437 19 O -0.513 6.513 20 C 0.196 3.804 21 N -0.517 5.517 22 C 0.352 3.648 23 N -0.518 5.518 24 H 0.429 0.571 25 C 0.254 3.746 26 N -0.517 5.517 27 C 0.063 3.937 28 C -0.195 4.195 29 C -0.151 4.151 30 C -0.121 4.121 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.411 0.589 40 H 0.223 0.777 41 H 0.169 0.831 42 H 0.154 0.846 43 H 0.067 0.933 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.462 -16.363 7.765 32.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.389 5.389 10 C 0.070 3.930 11 H 0.076 0.924 12 C -0.186 4.186 13 C -0.154 4.154 14 C -0.124 4.124 15 H 0.101 0.899 16 C 0.002 3.998 17 N -0.352 5.352 18 C 0.345 3.655 19 O -0.387 6.387 20 C 0.061 3.939 21 N -0.238 5.238 22 C 0.069 3.931 23 N -0.122 5.122 24 H 0.268 0.732 25 C -0.001 4.001 26 N -0.238 5.238 27 C -0.079 4.079 28 C -0.219 4.219 29 C -0.164 4.164 30 C -0.160 4.160 31 H 0.069 0.931 32 H 0.194 0.806 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.248 0.752 40 H 0.239 0.761 41 H 0.186 0.814 42 H 0.172 0.828 43 H 0.086 0.914 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 26.537 -16.125 7.631 31.976 hybrid contribution 0.683 1.026 0.288 1.266 sum 27.220 -15.098 7.919 32.119 Atomic orbital electron populations 1.69706 1.05107 1.25785 1.57655 1.24686 0.95248 0.97231 1.02133 0.86554 0.79221 0.84985 0.77793 1.21097 1.21825 1.20288 1.19088 0.80702 0.94647 1.42797 0.89247 1.42904 1.03984 1.01964 1.90097 1.20792 0.90040 0.89109 0.93023 0.92419 1.22941 0.93885 1.01021 1.00727 1.22414 0.96923 1.00927 0.95150 1.22355 0.92015 1.00367 0.97675 0.89888 1.21577 0.89577 0.93536 0.95139 1.45903 1.07230 1.31432 1.50674 1.17793 0.82307 0.84239 0.81118 1.90805 1.72571 1.28969 1.46376 1.21292 0.90728 0.90505 0.91368 1.67838 1.36578 1.06185 1.13204 1.24805 0.78817 0.97294 0.92187 1.41826 1.08932 1.22746 1.38673 0.73180 1.20567 0.92479 0.90123 0.96928 1.69554 1.15103 1.15061 1.24052 1.22728 0.98309 0.92549 0.94300 1.21632 0.92033 1.01876 1.06363 1.20882 0.92978 0.99631 1.02904 1.22642 0.95484 0.99161 0.98753 0.93108 0.80635 0.92854 0.90882 0.91918 0.92507 0.91022 0.90839 0.75231 0.76124 0.81412 0.82798 0.91444 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.25 13.97 55.49 0.78 -28.47 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 22.11 27.74 -169.99 -4.71 17.39 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 7 C -0.24 -6.73 10.44 -15.06 -0.16 -6.89 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.75 -17.21 4.84 -52.34 -0.25 -17.47 16 10 C 0.18 3.26 3.55 -66.81 -0.24 3.02 16 11 H 0.06 1.09 8.09 -51.93 -0.42 0.67 16 12 C -0.15 -2.34 6.59 -25.61 -0.17 -2.50 16 13 C -0.12 -1.44 5.97 -25.07 -0.15 -1.58 16 14 C -0.10 -1.18 2.96 -88.63 -0.26 -1.45 16 15 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 16 C 0.12 1.38 5.11 -4.04 -0.02 1.36 16 17 N -0.70 -7.14 5.40 -61.00 -0.33 -7.47 16 18 C 0.56 6.83 7.84 -11.97 -0.09 6.73 16 19 O -0.51 -7.77 15.42 5.41 0.08 -7.69 16 20 C 0.20 2.04 6.83 -82.36 -0.56 1.47 16 21 N -0.52 -3.59 9.57 -10.67 -0.10 -3.70 16 22 C 0.35 1.02 12.24 -91.02 -1.11 -0.09 16 23 N -0.52 -2.07 5.32 -12.02 -0.06 -2.14 16 24 H 0.43 0.11 8.93 -40.82 -0.36 -0.25 16 25 C 0.25 2.42 8.71 -154.20 -1.34 1.07 16 26 N -0.52 -5.84 11.16 -10.91 -0.12 -5.96 16 27 C 0.06 0.68 11.70 -17.59 -0.21 0.48 16 28 C -0.20 -2.32 10.25 -39.44 -0.40 -2.72 16 29 C -0.15 -1.73 6.19 -104.64 -0.65 -2.38 16 30 C -0.12 -1.73 5.97 -25.07 -0.15 -1.88 16 31 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 32 H 0.36 8.23 5.40 -40.82 -0.22 8.01 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.37 7.92 -51.93 -0.41 0.96 16 35 H 0.06 0.82 8.01 -51.93 -0.42 0.41 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.41 3.45 7.72 -40.82 -0.32 3.13 16 40 H 0.22 -0.64 8.06 -52.49 -0.42 -1.06 16 41 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.15 1.86 7.38 -52.49 -0.39 1.47 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 1.02 7.64 -51.93 -0.40 0.63 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -37.70 366.39 -10.72 -48.42 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.90 Total: 6.94 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -5.61 Total: -5.38 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -0.10 Total: -65.20 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.08 Total: -7.69 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.70 -10.72 -48.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086745874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.288 kcal (2) G-P(sol) polarization free energy of solvation -37.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds