Wall clock time and date at job start Tue Mar 31 2020 05:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.67274 * 31.77236 * 10 9 7 12 12 C 1.54885 * 110.76220 * 268.32842 * 10 9 7 13 13 C 1.54263 * 104.19972 * 203.74728 * 12 10 9 14 14 C 1.53872 * 106.59900 * 23.61133 * 13 12 10 15 15 H 1.09006 * 110.07030 * 240.69410 * 14 13 12 16 16 C 1.52997 * 110.03375 * 119.28633 * 14 13 12 17 17 N 1.46500 * 109.47246 * 67.83286 * 16 14 13 18 18 C 1.34771 * 119.99911 * 180.02562 * 17 16 14 19 19 O 1.21627 * 120.00527 * 359.97438 * 18 17 16 20 20 C 1.47214 * 119.99982 * 180.02562 * 18 17 16 21 21 C 1.37753 * 119.94154 * 179.97438 * 20 18 17 22 22 C 1.39863 * 119.93001 * 180.02562 * 21 20 18 23 23 C 1.36294 * 119.82028 * 359.97438 * 22 21 20 24 24 C 1.40773 * 119.71266 * 0.02562 * 23 22 21 25 25 N 1.32811 * 132.74685 * 179.97438 * 24 23 22 26 26 C 1.32377 * 109.74997 * 179.97438 * 25 24 23 27 27 N 1.31397 * 109.61080 * 0.02562 * 26 25 24 28 28 N 1.36555 * 119.87334 * 359.71869 * 24 23 22 29 29 C 1.54264 * 106.59758 * 359.97438 * 14 13 12 30 30 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 32 32 H 1.08993 * 110.48700 * 322.43021 * 12 10 9 33 33 H 1.09004 * 110.48334 * 85.06845 * 12 10 9 34 34 H 1.09009 * 110.03267 * 264.32650 * 13 12 10 35 35 H 1.08998 * 110.07503 * 142.91787 * 13 12 10 36 36 H 1.08996 * 109.46994 * 187.83456 * 16 14 13 37 37 H 1.08999 * 109.47012 * 307.83081 * 16 14 13 38 38 H 0.97001 * 119.99972 * 0.02562 * 17 16 14 39 39 H 1.07996 * 120.03108 * 359.97425 * 21 20 18 40 40 H 1.07999 * 120.08679 * 180.02562 * 22 21 20 41 41 H 1.08003 * 120.14567 * 180.02562 * 23 22 21 42 42 H 1.08000 * 125.19352 * 179.97438 * 26 25 24 43 43 H 1.09005 * 110.48840 * 217.71210 * 29 14 13 44 44 H 1.08997 * 110.48668 * 95.06883 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0013 -3.5564 0.5375 12 6 2.2960 -4.1533 -1.4471 13 6 2.4851 -5.6771 -1.2982 14 6 1.7855 -6.0809 0.0114 15 1 2.5070 -6.5183 0.7015 16 6 0.6658 -7.0821 -0.2797 17 7 1.2478 -8.3463 -0.7373 18 6 0.4456 -9.3815 -1.0549 19 8 -0.7616 -9.2666 -0.9612 20 6 1.0305 -10.6521 -1.5142 21 6 0.2093 -11.7097 -1.8380 22 6 0.7653 -12.9168 -2.2738 23 6 2.1186 -13.0416 -2.3769 24 6 2.9471 -11.9535 -2.0430 25 7 4.2651 -11.7900 -2.0457 26 6 4.5646 -10.5652 -1.6425 27 7 3.4599 -9.9082 -1.3695 28 7 2.3911 -10.7788 -1.6238 29 6 1.1962 -4.7884 0.6129 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0042 32 1 1.4301 -3.9357 -2.0722 33 1 3.1934 -3.6965 -1.8644 34 1 3.5469 -5.9180 -1.2440 35 1 2.0275 -6.1950 -2.1410 36 1 0.0884 -7.2556 0.6284 37 1 0.0125 -6.6813 -1.0546 38 1 2.2106 -8.4381 -0.8117 39 1 -0.8625 -11.6070 -1.7546 40 1 0.1239 -13.7474 -2.5287 41 1 2.5535 -13.9712 -2.7132 42 1 5.5644 -10.1671 -1.5509 43 1 1.2906 -4.7953 1.6989 44 1 0.1525 -4.6729 0.3206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086748249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:28 Heat of formation + Delta-G solvation = 93.028751 kcal Electronic energy + Delta-G solvation = -27115.654783 eV Core-core repulsion = 23263.295360 eV Total energy + Delta-G solvation = -3852.359423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.22365 -40.17164 -38.43368 -37.79196 -35.15240 -34.22863 -33.27956 -31.48842 -30.82797 -30.44856 -29.05017 -27.38629 -25.61766 -24.20643 -23.99170 -23.11697 -22.67978 -21.10711 -19.78161 -19.37127 -18.56091 -18.00458 -17.20613 -17.08868 -16.83947 -16.33629 -16.10444 -15.68921 -15.01170 -14.91814 -14.66449 -14.29669 -13.82741 -13.48782 -13.41856 -13.22452 -12.97620 -12.82060 -12.55207 -12.26064 -12.11409 -11.84497 -11.74621 -11.17121 -10.94768 -10.79225 -10.73683 -10.60683 -10.57216 -10.35482 -10.24122 -10.13801 -10.11029 -9.82618 -9.65842 -9.28642 -8.87730 -8.83882 -6.93492 -5.75913 -3.04373 -0.32649 0.36822 1.41669 1.92034 2.53034 2.69971 2.95897 3.40044 3.43548 3.49137 3.51411 3.57733 4.16054 4.22954 4.31817 4.58343 4.61107 4.78604 4.81778 4.93031 5.07728 5.15394 5.36530 5.50627 5.54657 5.57450 5.63512 5.67713 5.69413 5.84204 5.89755 5.96249 6.01420 6.04870 6.05419 6.20233 6.32280 6.34669 6.46959 6.57708 6.72491 6.88574 7.11749 7.21590 7.41572 7.71856 7.82510 8.43015 9.53917 10.12811 10.46958 11.46819 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.002196 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.308944 B =12745.610550 C =13548.237190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.056 0.944 12 C -0.143 4.143 13 C -0.118 4.118 14 C -0.100 4.100 15 H 0.074 0.926 16 C 0.123 3.877 17 N -0.706 5.706 18 C 0.555 3.445 19 O -0.523 6.523 20 C 0.091 3.909 21 C -0.080 4.080 22 C -0.069 4.069 23 C -0.081 4.081 24 C 0.278 3.722 25 N -0.540 5.540 26 C 0.250 3.750 27 N -0.350 5.350 28 N -0.275 5.275 29 C -0.122 4.122 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.417 0.583 39 H 0.176 0.824 40 H 0.162 0.838 41 H 0.164 0.836 42 H 0.231 0.769 43 H 0.064 0.936 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 -30.406 -4.253 30.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.067 3.933 11 H 0.074 0.926 12 C -0.184 4.184 13 C -0.157 4.157 14 C -0.120 4.120 15 H 0.092 0.908 16 C 0.000 4.000 17 N -0.362 5.362 18 C 0.338 3.662 19 O -0.400 6.400 20 C -0.021 4.021 21 C -0.104 4.104 22 C -0.095 4.095 23 C -0.103 4.103 24 C 0.025 3.975 25 N -0.269 5.269 26 C -0.050 4.050 27 N -0.182 5.182 28 N -0.053 5.053 29 C -0.161 4.161 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.259 0.741 39 H 0.193 0.807 40 H 0.179 0.821 41 H 0.181 0.819 42 H 0.247 0.753 43 H 0.083 0.917 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.839 -29.523 -3.979 30.036 hybrid contribution 0.581 0.817 -0.154 1.014 sum 4.420 -28.706 -4.133 29.337 Atomic orbital electron populations 1.69673 1.05095 1.25519 1.57829 1.24754 0.95527 0.97716 1.03112 0.86129 0.78777 0.84196 0.77164 1.20575 1.21905 1.21898 1.19311 0.91027 0.84155 1.42424 0.91133 1.42398 1.05772 0.99791 1.88056 1.21150 0.94328 0.85565 0.92303 0.92587 1.23071 1.01356 0.92706 1.01269 1.22185 0.99546 0.97919 0.96015 1.21954 0.96408 0.95473 0.98116 0.90772 1.21709 0.96296 0.81858 1.00117 1.46433 1.12074 1.12648 1.64999 1.17508 0.86789 0.82754 0.79136 1.90877 1.13051 1.82354 1.53737 1.20686 0.78857 0.98080 1.04450 1.21558 1.01640 0.90331 0.96836 1.21309 0.94563 0.97800 0.95819 1.20570 0.92084 0.97089 1.00534 1.21868 0.90042 0.88241 0.97390 1.70869 1.08982 1.19278 1.27819 1.26222 0.98658 0.87753 0.92320 1.78012 0.93171 1.14852 1.32180 1.47912 1.05640 1.11266 1.40450 1.22611 1.00502 0.93220 0.99792 0.93572 0.78194 0.91860 0.92539 0.92319 0.92655 0.91035 0.90652 0.74140 0.80679 0.82092 0.81892 0.75261 0.91674 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.63 9.96 -15.06 -0.15 -6.78 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.72 -18.13 5.23 -51.51 -0.27 -18.40 16 10 C 0.18 3.50 3.56 -65.95 -0.23 3.27 16 11 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 12 C -0.14 -2.55 6.51 -25.08 -0.16 -2.71 16 13 C -0.12 -1.67 6.18 -25.62 -0.16 -1.83 16 14 C -0.10 -1.35 2.96 -89.51 -0.27 -1.61 16 15 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 16 C 0.12 1.62 4.69 -4.04 -0.02 1.61 16 17 N -0.71 -8.88 5.33 -61.46 -0.33 -9.21 16 18 C 0.55 7.05 7.78 -12.62 -0.10 6.95 16 19 O -0.52 -7.78 16.29 5.25 0.09 -7.70 16 20 C 0.09 0.92 6.80 -82.04 -0.56 0.36 16 21 C -0.08 -0.53 9.58 -39.15 -0.38 -0.91 16 22 C -0.07 -0.27 10.04 -39.67 -0.40 -0.67 16 23 C -0.08 -0.45 10.09 -39.32 -0.40 -0.84 16 24 C 0.28 2.60 7.88 -156.38 -1.23 1.37 16 25 N -0.54 -5.47 11.24 -13.99 -0.16 -5.63 16 26 C 0.25 2.26 12.98 -91.99 -1.19 1.06 16 27 N -0.35 -3.76 9.99 29.25 0.29 -3.47 16 28 N -0.28 -2.90 3.93 -8.81 -0.03 -2.93 16 29 C -0.12 -1.98 5.98 -25.08 -0.15 -2.13 16 30 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.38 10.28 7.76 -40.82 -0.32 9.96 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.05 0.77 7.61 -51.93 -0.40 0.38 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.42 5.03 5.30 -40.82 -0.22 4.82 16 39 H 0.18 0.94 7.59 -52.49 -0.40 0.54 16 40 H 0.16 0.01 8.06 -52.49 -0.42 -0.41 16 41 H 0.16 0.45 8.06 -52.48 -0.42 0.03 16 42 H 0.23 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.07 1.18 7.73 -51.93 -0.40 0.78 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -34.77 367.81 -10.58 -45.35 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.92 Total: 10.00 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -5.49 Total: -3.42 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: 0.23 Total: -67.29 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.77 -10.58 -45.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086748249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.381 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds