Wall clock time and date at job start Tue Mar 31 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99750 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.67274 * 31.77236 * 10 9 7 12 12 C 1.54885 * 110.76220 * 268.32842 * 10 9 7 13 13 C 1.54263 * 104.19972 * 203.74728 * 12 10 9 14 14 C 1.53872 * 106.59900 * 23.61133 * 13 12 10 15 15 H 1.09008 * 110.03328 * 240.71741 * 14 13 12 16 16 C 1.52993 * 110.07347 * 119.30682 * 14 13 12 17 17 N 1.46507 * 109.47290 * 67.81104 * 16 14 13 18 18 C 1.34774 * 120.00199 * 180.02562 * 17 16 14 19 19 O 1.21712 * 120.00106 * 359.97438 * 18 17 16 20 20 C 1.46582 * 120.00080 * 180.02562 * 18 17 16 21 21 C 1.40646 * 126.53436 * 359.68362 * 20 18 17 22 22 N 1.30700 * 108.72138 * 179.81820 * 21 20 18 23 23 N 1.39907 * 109.52162 * 0.45214 * 22 21 20 24 24 C 1.36313 * 132.16050 * 179.71238 * 23 22 21 25 25 C 1.35755 * 119.15318 * 180.02562 * 24 23 22 26 26 C 1.39968 * 119.35689 * 359.97438 * 25 24 23 27 27 N 1.31497 * 120.10229 * 0.02562 * 26 25 24 28 28 C 1.33379 * 120.85626 * 359.95695 * 27 26 25 29 29 C 1.54264 * 106.59758 * 359.97438 * 14 13 12 30 30 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 32 32 H 1.08993 * 110.48700 * 322.43021 * 12 10 9 33 33 H 1.09004 * 110.48334 * 85.06845 * 12 10 9 34 34 H 1.09009 * 110.03267 * 264.32650 * 13 12 10 35 35 H 1.08998 * 110.07503 * 142.91787 * 13 12 10 36 36 H 1.09001 * 109.47395 * 187.80518 * 16 14 13 37 37 H 1.08996 * 109.47452 * 307.81141 * 16 14 13 38 38 H 0.97000 * 119.99541 * 359.97438 * 17 16 14 39 39 H 1.07993 * 125.64012 * 0.02562 * 21 20 18 40 40 H 1.07999 * 120.42429 * 359.97438 * 24 23 22 41 41 H 1.07999 * 120.32552 * 180.02562 * 25 24 23 42 42 H 1.07999 * 119.94281 * 180.02562 * 26 25 24 43 43 H 1.09005 * 110.48840 * 217.71210 * 29 14 13 44 44 H 1.08997 * 110.48668 * 95.06883 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0013 -3.5564 0.5375 12 6 2.2960 -4.1533 -1.4471 13 6 2.4851 -5.6771 -1.2982 14 6 1.7855 -6.0809 0.0114 15 1 2.5076 -6.5179 0.7012 16 6 0.6659 -7.0825 -0.2786 17 7 1.2480 -8.3467 -0.7362 18 6 0.4459 -9.3824 -1.0529 19 8 -0.7621 -9.2677 -0.9584 20 6 1.0284 -10.6474 -1.5102 21 6 2.3967 -10.9283 -1.6742 22 7 2.5250 -12.1597 -2.0931 23 7 1.2596 -12.7399 -2.2336 24 6 0.8611 -13.9791 -2.6380 25 6 -0.4649 -14.2675 -2.6769 26 6 -1.3914 -13.2879 -2.3013 27 7 -0.9767 -12.1011 -1.9156 28 6 0.3246 -11.8112 -1.8746 29 6 1.1962 -4.7884 0.6129 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0042 32 1 1.4301 -3.9357 -2.0722 33 1 3.1934 -3.6965 -1.8644 34 1 3.5469 -5.9180 -1.2440 35 1 2.0275 -6.1950 -2.1410 36 1 0.0892 -7.2560 0.6299 37 1 0.0119 -6.6823 -1.0532 38 1 2.2108 -8.4380 -0.8119 39 1 3.2075 -10.2413 -1.4822 40 1 1.5909 -14.7219 -2.9244 41 1 -0.8016 -15.2434 -2.9938 42 1 -2.4486 -13.5072 -2.3283 43 1 1.2906 -4.7953 1.6989 44 1 0.1525 -4.6729 0.3206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086774550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:29 Heat of formation + Delta-G solvation = 88.298407 kcal Electronic energy + Delta-G solvation = -26519.777030 eV Core-core repulsion = 22667.212484 eV Total energy + Delta-G solvation = -3852.564547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.91081 -39.57347 -38.50516 -37.88291 -34.78634 -34.50976 -33.29614 -31.71442 -30.82910 -29.97701 -28.76155 -27.18333 -25.43325 -24.94407 -23.54712 -22.98613 -22.77242 -20.56946 -19.70031 -19.34958 -18.75205 -17.86221 -17.36190 -17.04551 -16.67239 -16.32233 -15.89608 -15.36658 -14.88990 -14.79131 -14.57349 -14.08801 -13.87929 -13.67322 -13.47802 -13.27611 -13.14314 -12.77518 -12.66714 -12.09616 -11.98870 -11.77593 -11.70116 -11.10591 -10.79593 -10.75773 -10.53509 -10.47570 -10.29612 -10.18892 -10.17212 -10.10042 -9.91044 -9.72482 -9.60352 -8.98992 -8.83265 -8.42925 -6.89620 -5.72319 -3.00678 -0.11226 0.26706 1.40964 1.73004 2.72797 3.16060 3.32559 3.46006 3.46230 3.51131 3.53015 3.62417 3.79400 4.27011 4.42797 4.60556 4.62635 4.71234 4.86547 4.89644 5.02174 5.10999 5.22280 5.38594 5.58741 5.63568 5.68028 5.78319 5.83566 5.89640 5.96714 6.04415 6.10998 6.17074 6.31379 6.40823 6.49569 6.57042 6.63239 6.78487 6.79714 6.93666 7.12921 7.16908 7.59235 7.74360 8.36667 8.46676 9.57364 10.17046 10.51012 11.50343 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.036566 B = 0.001854 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.547924 B =15095.500165 C =15559.065697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.055 0.945 12 C -0.144 4.144 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.073 0.927 16 C 0.131 3.869 17 N -0.726 5.726 18 C 0.592 3.408 19 O -0.530 6.530 20 C -0.285 4.285 21 C 0.129 3.871 22 N -0.311 5.311 23 N -0.308 5.308 24 C 0.165 3.835 25 C -0.222 4.222 26 C 0.184 3.816 27 N -0.440 5.440 28 C 0.317 3.683 29 C -0.123 4.123 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.395 0.605 39 H 0.206 0.794 40 H 0.184 0.816 41 H 0.172 0.828 42 H 0.185 0.815 43 H 0.063 0.937 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.115 -33.894 -5.386 34.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.066 3.934 11 H 0.073 0.927 12 C -0.185 4.185 13 C -0.158 4.158 14 C -0.120 4.120 15 H 0.091 0.909 16 C 0.008 3.992 17 N -0.378 5.378 18 C 0.378 3.622 19 O -0.406 6.406 20 C -0.302 4.302 21 C -0.052 4.052 22 N -0.133 5.133 23 N -0.077 5.077 24 C 0.029 3.971 25 C -0.246 4.246 26 C 0.002 3.998 27 N -0.150 5.150 28 C 0.085 3.915 29 C -0.162 4.162 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.229 0.771 39 H 0.222 0.778 40 H 0.201 0.799 41 H 0.190 0.810 42 H 0.202 0.798 43 H 0.082 0.918 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.825 -33.659 -5.315 34.193 hybrid contribution 0.692 0.730 -0.205 1.027 sum 3.517 -32.929 -5.520 33.574 Atomic orbital electron populations 1.69664 1.05085 1.25602 1.57752 1.24750 0.95514 0.97685 1.03146 0.86203 0.78630 0.83969 0.77465 1.21798 1.21817 1.20806 1.19267 0.90985 0.84207 1.42519 0.91205 1.42396 1.05787 0.99795 1.88057 1.21159 0.94304 0.85609 0.92326 0.92686 1.23066 1.01299 0.92841 1.01254 1.22211 0.99314 0.97985 0.96339 1.21957 0.96577 0.95606 0.97830 0.90850 1.21529 0.95859 0.81966 0.99883 1.45777 1.09755 1.13176 1.69095 1.16743 0.86245 0.81866 0.77304 1.90857 1.13775 1.82804 1.53175 1.19505 0.91788 0.95715 1.23157 1.24177 0.96175 0.92900 0.91979 1.77611 0.95710 1.10668 1.29274 1.47059 1.08042 1.10485 1.42102 1.22170 0.97368 0.84720 0.92855 1.21982 0.91446 1.03842 1.07322 1.23691 1.01798 0.86750 0.87581 1.68370 1.11089 1.20242 1.15346 1.20428 0.85156 0.90246 0.95623 1.22608 1.00530 0.93342 0.99731 0.93538 0.78177 0.91863 0.92657 0.92479 0.92317 0.91536 0.91153 0.77095 0.77768 0.79904 0.81036 0.79769 0.91786 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.68 9.96 -15.06 -0.15 -6.83 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -18.23 5.23 -51.51 -0.27 -18.50 16 10 C 0.18 3.48 3.56 -65.95 -0.23 3.25 16 11 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 12 C -0.14 -2.52 6.51 -25.08 -0.16 -2.69 16 13 C -0.12 -1.58 6.19 -25.62 -0.16 -1.74 16 14 C -0.10 -1.28 2.96 -89.51 -0.26 -1.55 16 15 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 16 C 0.13 1.72 4.69 -4.04 -0.02 1.70 16 17 N -0.73 -8.36 5.34 -61.65 -0.33 -8.69 16 18 C 0.59 8.42 7.78 -12.90 -0.10 8.32 16 19 O -0.53 -9.78 16.74 5.18 0.09 -9.70 16 20 C -0.29 -3.46 6.17 -104.66 -0.65 -4.11 16 21 C 0.13 1.16 11.44 -17.12 -0.20 0.96 16 22 N -0.31 -3.05 12.58 30.76 0.39 -2.66 16 23 N -0.31 -2.87 3.86 -11.98 -0.05 -2.92 16 24 C 0.16 0.80 11.29 -16.45 -0.19 0.61 16 25 C -0.22 -0.66 10.05 -39.82 -0.40 -1.06 16 26 C 0.18 1.07 11.28 -17.05 -0.19 0.88 16 27 N -0.44 -5.04 10.26 -12.00 -0.12 -5.16 16 28 C 0.32 3.80 7.74 -155.84 -1.21 2.59 16 29 C -0.12 -2.00 5.98 -25.08 -0.15 -2.15 16 30 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.38 10.38 7.76 -40.82 -0.32 10.06 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.06 0.75 7.62 -51.93 -0.40 0.35 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.40 3.28 7.27 -40.82 -0.30 2.98 16 39 H 0.21 0.97 7.46 -52.49 -0.39 0.58 16 40 H 0.18 0.22 8.06 -52.49 -0.42 -0.20 16 41 H 0.17 -0.22 8.06 -52.49 -0.42 -0.64 16 42 H 0.19 0.39 8.06 -52.49 -0.42 -0.04 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.20 7.73 -51.93 -0.40 0.80 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -38.69 372.27 -9.14 -47.83 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.00 Total: 6.77 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -4.16 Total: -2.35 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: 0.34 Total: -65.76 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.69 -9.14 -47.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086774550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.130 kcal (2) G-P(sol) polarization free energy of solvation -38.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds