Wall clock time and date at job start Tue Mar 31 2020 05:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99901 * 2 1 4 4 H 1.48503 * 109.47033 * 240.00250 * 3 2 1 5 5 H 1.48498 * 109.46983 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47274 * 120.00270 * 3 2 1 7 7 C 1.38810 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00559 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99705 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00248 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.01515 * 33.61083 * 10 9 7 12 12 C 1.54263 * 110.03219 * 272.16862 * 10 9 7 13 13 C 1.54890 * 104.19462 * 264.32474 * 12 10 9 14 14 C 1.54894 * 102.74958 * 322.05707 * 13 12 10 15 15 H 1.08997 * 110.59876 * 279.21250 * 14 13 12 16 16 C 1.52993 * 110.48476 * 156.62341 * 14 13 12 17 17 N 1.46496 * 109.47551 * 70.22881 * 16 14 13 18 18 C 1.34777 * 120.00258 * 180.02562 * 17 16 14 19 19 O 1.21543 * 120.00110 * 359.97438 * 18 17 16 20 20 C 1.47886 * 119.99827 * 179.97438 * 18 17 16 21 21 C 1.39901 * 125.69030 * 179.97438 * 20 18 17 22 22 C 1.38580 * 107.58936 * 180.02562 * 21 20 18 23 23 N 1.34117 * 132.33876 * 180.02562 * 22 21 20 24 24 C 1.31137 * 120.84230 * 179.97438 * 23 22 21 25 25 C 1.40347 * 120.29348 * 0.02562 * 24 23 22 26 26 C 1.35450 * 119.46354 * 359.97438 * 25 24 23 27 27 N 1.36670 * 119.14707 * 359.97438 * 26 25 24 28 28 N 1.32368 * 125.69452 * 359.69380 * 20 18 17 29 29 C 1.53871 * 110.03249 * 155.00235 * 10 9 7 30 30 H 0.96998 * 120.00373 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00191 * 0.02562 * 9 7 2 32 32 H 1.08995 * 110.48912 * 23.00040 * 12 10 9 33 33 H 1.09004 * 110.48322 * 145.51357 * 12 10 9 34 34 H 1.09002 * 110.75425 * 203.74883 * 13 12 10 35 35 H 1.08991 * 110.75819 * 80.37617 * 13 12 10 36 36 H 1.09000 * 109.47250 * 310.22660 * 16 14 13 37 37 H 1.09004 * 109.46862 * 190.22683 * 16 14 13 38 38 H 0.96999 * 119.99694 * 359.97438 * 17 16 14 39 39 H 1.08005 * 126.20450 * 359.97438 * 21 20 18 40 40 H 1.07997 * 119.84764 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.26248 * 179.97438 * 25 24 23 42 42 H 1.08004 * 120.42286 * 179.97438 * 26 25 24 43 43 H 1.09004 * 110.03408 * 0.02562 * 29 10 9 44 44 H 1.09003 * 110.03280 * 238.57678 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0016 10 6 2.0582 -3.6568 0.0016 11 1 2.9838 -3.5531 0.5678 12 6 2.3688 -4.0876 -1.4467 13 6 1.2202 -5.0621 -1.8077 14 6 0.9994 -5.8355 -0.4840 15 1 1.7390 -6.6288 -0.3754 16 6 -0.4160 -6.4140 -0.4315 17 7 -0.5337 -7.5057 -1.4012 18 6 -1.7001 -8.1681 -1.5320 19 8 -2.6543 -7.8600 -0.8451 20 6 -1.8190 -9.2699 -2.5113 21 6 -2.9672 -10.0344 -2.7444 22 6 -2.6627 -10.9568 -3.7327 23 7 -3.3870 -11.9169 -4.3263 24 6 -2.8614 -12.6774 -5.2565 25 6 -1.5254 -12.4975 -5.6468 26 6 -0.7828 -11.5314 -5.0552 27 7 -1.3534 -10.7511 -4.0892 28 7 -0.8583 -9.6938 -3.3172 29 6 1.1875 -4.7681 0.6137 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 0.0016 32 1 2.3597 -3.2242 -2.1119 33 1 3.3321 -4.5954 -1.4954 34 1 1.5251 -5.7401 -2.6049 35 1 0.3217 -4.5129 -2.0887 36 1 -1.1368 -5.6332 -0.6742 37 1 -0.6160 -6.7945 0.5701 38 1 0.2277 -7.7514 -1.9496 39 1 -3.9183 -9.9259 -2.2441 40 1 -3.4594 -13.4454 -5.7242 41 1 -1.0929 -13.1243 -6.4126 42 1 0.2470 -11.3798 -5.3433 43 1 0.2198 -4.3635 0.9103 44 1 1.6910 -5.2043 1.4764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086834908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:34 Heat of formation + Delta-G solvation = 89.999233 kcal Electronic energy + Delta-G solvation = -26453.032851 eV Core-core repulsion = 22600.542058 eV Total energy + Delta-G solvation = -3852.490793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.76946 -39.93210 -38.42148 -37.90344 -34.98620 -34.53060 -33.30230 -31.77508 -30.61150 -29.59431 -29.00159 -27.42269 -25.83801 -24.61285 -23.86103 -23.15950 -22.48210 -20.62052 -19.83114 -19.19605 -18.71325 -18.16268 -17.16571 -17.06068 -16.60687 -16.21528 -15.92778 -15.42288 -15.01641 -14.85363 -14.73352 -14.21063 -13.88154 -13.64433 -13.50125 -13.42298 -13.20057 -12.96887 -12.62119 -12.21404 -11.78403 -11.74411 -11.39533 -11.17840 -10.84487 -10.71857 -10.57365 -10.48681 -10.45545 -10.34403 -10.22518 -10.16176 -10.03630 -9.89941 -9.59292 -9.14182 -8.84838 -8.44508 -6.90441 -5.72906 -3.01233 -0.03430 0.23937 1.43991 1.47563 2.83454 2.85163 3.13444 3.37280 3.45798 3.50268 3.51419 3.60717 3.84281 4.30930 4.41406 4.61835 4.74746 4.82217 4.90750 4.97173 4.98428 5.12444 5.26442 5.46603 5.57149 5.59409 5.73913 5.75187 5.80320 5.92738 5.93966 6.02721 6.09612 6.14195 6.23032 6.34344 6.37567 6.49897 6.68487 6.71725 6.78378 6.94201 7.07457 7.13262 7.35736 7.73577 7.96718 8.46328 9.56757 10.16609 10.50564 11.49599 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.026617 B = 0.001913 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.702592 B =14635.279950 C =14876.236717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.720 5.720 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.113 4.113 14 C -0.103 4.103 15 H 0.075 0.925 16 C 0.124 3.876 17 N -0.706 5.706 18 C 0.595 3.405 19 O -0.516 6.516 20 C 0.078 3.922 21 C -0.199 4.199 22 C 0.248 3.752 23 N -0.456 5.456 24 C 0.179 3.821 25 C -0.221 4.221 26 C 0.162 3.838 27 N -0.306 5.306 28 N -0.278 5.278 29 C -0.121 4.121 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.407 0.593 39 H 0.174 0.826 40 H 0.182 0.818 41 H 0.170 0.830 42 H 0.182 0.818 43 H 0.073 0.927 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.186 -29.926 -12.085 32.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.186 4.186 13 C -0.151 4.151 14 C -0.122 4.122 15 H 0.094 0.906 16 C 0.001 3.999 17 N -0.357 5.357 18 C 0.377 3.623 19 O -0.389 6.389 20 C -0.082 4.082 21 C -0.230 4.230 22 C 0.022 3.978 23 N -0.166 5.166 24 C -0.007 4.007 25 C -0.245 4.245 26 C 0.028 3.972 27 N -0.079 5.079 28 N -0.108 5.108 29 C -0.160 4.160 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.242 0.758 39 H 0.192 0.808 40 H 0.199 0.801 41 H 0.188 0.812 42 H 0.199 0.801 43 H 0.092 0.908 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.411 -29.145 -11.352 31.309 hybrid contribution 0.639 0.658 -0.570 1.080 sum -0.772 -28.486 -11.922 30.890 Atomic orbital electron populations 1.69647 1.05064 1.25720 1.57656 1.24740 0.95498 0.97644 1.03149 0.86288 0.78511 0.83725 0.77776 1.21368 1.21754 1.21330 1.19211 0.90962 0.84248 1.42630 0.91297 1.42539 1.05661 0.99680 1.88276 1.20800 0.94138 0.86088 0.92591 0.93365 1.23117 0.95997 0.98614 1.00920 1.22509 1.00033 0.97412 0.95149 1.22242 0.94462 0.97865 0.97670 0.90621 1.21669 0.98061 0.88297 0.91824 1.45928 1.13216 1.35275 1.41315 1.16836 0.83592 0.80405 0.81484 1.90851 1.37826 1.65744 1.44504 1.22186 0.92462 0.97245 0.96296 1.21016 1.01174 0.98336 1.02463 1.20560 0.81846 0.97060 0.98330 1.68274 1.34430 1.04281 1.09642 1.23481 0.92706 0.94634 0.89885 1.21896 0.96261 1.01305 1.05073 1.22127 1.00456 0.88541 0.86053 1.47162 1.11060 1.23545 1.26172 1.78114 1.20562 1.02430 1.09673 1.22467 1.01538 0.95359 0.96615 0.93490 0.78244 0.90979 0.93347 0.92955 0.91236 0.90401 0.91056 0.75786 0.80848 0.80060 0.81244 0.80076 0.90794 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.63 9.96 -15.06 -0.15 -6.78 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.89 5.08 -52.34 -0.27 -18.16 16 10 C 0.17 3.39 3.55 -66.81 -0.24 3.15 16 11 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 12 C -0.15 -2.52 6.54 -25.07 -0.16 -2.69 16 13 C -0.11 -1.67 6.19 -24.74 -0.15 -1.82 16 14 C -0.10 -1.36 2.89 -88.96 -0.26 -1.62 16 15 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 16 C 0.12 1.65 4.96 -4.05 -0.02 1.63 16 17 N -0.71 -8.73 5.44 -61.24 -0.33 -9.07 16 18 C 0.60 8.41 7.83 -12.31 -0.10 8.31 16 19 O -0.52 -8.85 16.88 5.33 0.09 -8.76 16 20 C 0.08 1.00 7.05 -83.06 -0.59 0.41 16 21 C -0.20 -2.46 10.65 -38.83 -0.41 -2.88 16 22 C 0.25 2.74 7.90 -155.42 -1.23 1.51 16 23 N -0.46 -4.17 10.48 -12.22 -0.13 -4.29 16 24 C 0.18 0.81 11.27 -17.06 -0.19 0.62 16 25 C -0.22 -0.62 10.05 -39.78 -0.40 -1.02 16 26 C 0.16 0.84 11.30 -16.39 -0.19 0.66 16 27 N -0.31 -3.00 3.90 -12.20 -0.05 -3.04 16 28 N -0.28 -3.23 12.34 33.23 0.41 -2.82 16 29 C -0.12 -1.92 6.14 -25.62 -0.16 -2.08 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.38 10.18 7.52 -40.82 -0.31 9.87 16 32 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.16 7.96 -51.93 -0.41 0.74 16 36 H 0.08 1.18 8.02 -51.93 -0.42 0.76 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.41 4.35 8.12 -40.82 -0.33 4.02 16 39 H 0.17 2.03 8.06 -52.48 -0.42 1.61 16 40 H 0.18 0.10 8.06 -52.49 -0.42 -0.32 16 41 H 0.17 -0.21 8.06 -52.49 -0.42 -0.63 16 42 H 0.18 0.36 8.06 -52.48 -0.42 -0.06 16 43 H 0.07 1.28 7.31 -51.93 -0.38 0.90 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -35.46 373.98 -9.31 -44.78 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.04 Total: 8.96 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -4.34 Total: -3.09 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: 0.36 Total: -65.04 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.46 -9.31 -44.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086834908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.775 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds