Wall clock time and date at job start Tue Mar 31 2020 05:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.67223 * 31.76284 * 10 9 7 12 12 C 1.54893 * 110.75633 * 268.33095 * 10 9 7 13 13 C 1.54267 * 104.19282 * 203.74048 * 12 10 9 14 14 C 1.53879 * 106.60134 * 23.60896 * 13 12 10 15 15 H 1.08996 * 110.03206 * 240.71356 * 14 13 12 16 16 C 1.53003 * 110.07613 * 119.30250 * 14 13 12 17 17 N 1.46504 * 109.46689 * 67.81048 * 16 14 13 18 18 C 1.34776 * 119.99527 * 180.02562 * 17 16 14 19 19 O 1.21570 * 120.00327 * 359.97438 * 18 17 16 20 20 C 1.47726 * 119.99797 * 179.97438 * 18 17 16 21 21 C 1.40252 * 119.87520 * 359.72407 * 20 18 17 22 22 C 1.36161 * 120.55031 * 179.77174 * 21 20 18 23 23 C 1.39908 * 119.97784 * 0.48169 * 22 21 20 24 24 N 1.34754 * 134.59154 * 179.77408 * 23 22 21 25 25 N 1.28645 * 109.29402 * 180.02562 * 24 23 22 26 26 N 1.28816 * 111.79148 * 359.97438 * 25 24 23 27 27 H 0.96996 * 125.94345 * 179.97438 * 26 25 24 28 28 C 1.37366 * 108.11328 * 0.02562 * 26 25 24 29 29 C 1.38619 * 134.88964 * 180.02562 * 28 26 25 30 30 C 1.54270 * 106.59395 * 359.97438 * 14 13 12 31 31 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 32 32 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 33 33 H 1.08998 * 110.48267 * 322.41716 * 12 10 9 34 34 H 1.08998 * 110.48580 * 85.06402 * 12 10 9 35 35 H 1.08994 * 110.03630 * 264.31920 * 13 12 10 36 36 H 1.09005 * 110.07246 * 142.91403 * 13 12 10 37 37 H 1.08994 * 109.47097 * 187.81197 * 16 14 13 38 38 H 1.08997 * 109.46816 * 307.81260 * 16 14 13 39 39 H 0.96995 * 119.99832 * 359.97438 * 17 16 14 40 40 H 1.08002 * 119.72943 * 359.97438 * 21 20 18 41 41 H 1.08004 * 120.01337 * 180.23513 * 22 21 20 42 42 H 1.08000 * 120.24757 * 359.94242 * 29 28 26 43 43 H 1.09002 * 110.48043 * 217.71140 * 30 14 13 44 44 H 1.09000 * 110.48785 * 95.07352 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5532 -3.2379 -0.5375 12 6 4.4236 -2.9249 1.4467 13 6 5.6485 -3.8507 1.2975 14 6 6.3476 -3.4472 -0.0126 15 1 6.3646 -4.2912 -0.7021 16 6 7.7750 -2.9783 0.2766 17 7 8.5788 -4.1145 0.7342 18 6 9.8770 -3.9376 1.0503 19 8 10.3810 -2.8354 0.9553 20 6 10.6874 -5.0831 1.5123 21 6 10.1017 -6.3523 1.6265 22 6 10.8370 -7.4186 2.0465 23 6 12.1859 -7.2506 2.3778 24 7 13.1616 -8.0702 2.8160 25 7 14.2463 -7.3959 2.9692 26 7 14.0852 -6.1550 2.6634 27 1 14.7663 -5.4655 2.7039 28 6 12.7807 -5.9777 2.2712 29 6 12.0276 -4.8976 1.8379 30 6 5.5226 -2.2906 -0.6141 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3622 -0.0014 33 1 4.6684 -2.0660 2.0714 34 1 3.5794 -3.4735 1.8645 35 1 5.3263 -4.8906 1.2438 36 1 6.3263 -3.7132 2.1400 37 1 8.2131 -2.5659 -0.6322 38 1 7.7556 -2.2116 1.0510 39 1 8.1765 -4.9938 0.8104 40 1 9.0596 -6.4858 1.3762 41 1 10.3782 -8.3929 2.1277 42 1 12.4774 -3.9193 1.7542 43 1 5.4810 -2.3763 -1.6999 44 1 5.9446 -1.3290 -0.3223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086872509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:35 Heat of formation + Delta-G solvation = 80.765167 kcal Electronic energy + Delta-G solvation = -26398.714544 eV Core-core repulsion = 22545.823331 eV Total energy + Delta-G solvation = -3852.891212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.76788 -40.42439 -38.53284 -37.74595 -35.23266 -34.40728 -33.55970 -31.57822 -31.08675 -30.89528 -29.17888 -27.69281 -25.67389 -24.08568 -23.94867 -22.97899 -22.72781 -21.28877 -20.10743 -19.57369 -19.09678 -18.63455 -17.56677 -17.26020 -16.81643 -16.48219 -16.00103 -15.29743 -15.14026 -14.92913 -14.72774 -14.45542 -14.05035 -13.72822 -13.31019 -13.08619 -12.78875 -12.74328 -12.62542 -12.48739 -12.38582 -12.21731 -11.78711 -11.39133 -11.34934 -11.05018 -10.87601 -10.71386 -10.63951 -10.46478 -10.32499 -10.25799 -9.92702 -9.64826 -9.60143 -9.34259 -9.01701 -8.92482 -7.27790 -5.78917 -3.14343 -0.24858 0.56214 1.56548 1.89128 2.44526 2.78519 3.21287 3.36580 3.39594 3.40259 3.44637 3.98559 4.16618 4.30326 4.41555 4.51395 4.57537 4.58358 4.75186 4.78677 4.86496 5.23218 5.35420 5.36948 5.43278 5.50414 5.57379 5.58876 5.59968 5.66526 5.75871 5.86658 5.91419 5.92089 6.03595 6.17957 6.18212 6.20411 6.23811 6.38583 6.56242 6.76314 6.95070 7.14464 7.67259 7.83007 7.97829 8.40639 9.19138 9.91891 10.11438 11.39351 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.034698 B = 0.001874 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.765055 B =14939.072396 C =15441.482080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.182 3.818 11 H 0.065 0.935 12 C -0.144 4.144 13 C -0.122 4.122 14 C -0.101 4.101 15 H 0.077 0.923 16 C 0.125 3.875 17 N -0.717 5.717 18 C 0.557 3.443 19 O -0.535 6.535 20 C -0.099 4.099 21 C -0.090 4.090 22 C -0.051 4.051 23 C 0.028 3.972 24 N -0.251 5.251 25 N -0.007 5.007 26 N -0.411 5.411 27 H 0.455 0.545 28 C 0.017 3.983 29 C -0.035 4.035 30 C -0.126 4.126 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.401 0.599 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.067 0.933 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.076 -14.701 3.451 31.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.386 5.386 10 C 0.072 3.928 11 H 0.083 0.917 12 C -0.185 4.185 13 C -0.160 4.160 14 C -0.121 4.121 15 H 0.095 0.905 16 C 0.003 3.997 17 N -0.369 5.369 18 C 0.344 3.656 19 O -0.412 6.412 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.073 4.073 23 C -0.098 4.098 24 N -0.127 5.127 25 N 0.011 4.989 26 N -0.140 5.140 27 H 0.303 0.697 28 C -0.103 4.103 29 C -0.057 4.057 30 C -0.166 4.166 31 H 0.069 0.931 32 H 0.194 0.806 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.237 0.763 40 H 0.160 0.840 41 H 0.165 0.835 42 H 0.166 0.834 43 H 0.086 0.914 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 28.076 -15.078 3.851 32.101 hybrid contribution 0.151 2.069 -0.178 2.082 sum 28.228 -13.009 3.674 31.297 Atomic orbital electron populations 1.69701 1.05115 1.25829 1.57483 1.24683 0.95241 0.97233 1.02018 0.86558 0.79231 0.84994 0.77790 1.21074 1.21774 1.20299 1.19094 0.80626 0.94697 1.43037 0.89198 1.42742 1.04021 1.01999 1.89810 1.21137 0.89841 0.89222 0.92639 0.91687 1.23040 0.96013 0.98529 1.00870 1.22229 0.97915 0.99737 0.96103 1.21972 0.92656 0.99348 0.98102 0.90463 1.21641 0.90001 0.88016 1.00090 1.45960 1.10084 1.13445 1.67374 1.18010 0.82011 0.87821 0.77788 1.90812 1.71675 1.25535 1.53202 1.19792 0.93636 0.94192 1.02981 1.20920 1.00468 0.91022 0.98741 1.19962 0.89390 1.00336 0.97662 1.20129 0.96254 0.89641 1.03768 1.75417 0.95303 1.24897 1.17067 1.78014 1.19975 0.88679 1.12211 1.44913 1.09786 1.09859 1.49433 0.69744 1.19657 0.86189 0.97961 1.06497 1.20099 0.92164 0.97206 0.96264 1.22644 0.96577 0.97246 1.00089 0.93066 0.80583 0.91981 0.92045 0.92087 0.92251 0.91166 0.90873 0.76278 0.83955 0.83465 0.83381 0.91394 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.00 13.97 55.49 0.78 -28.23 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 21.87 27.73 -169.99 -4.71 17.16 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 7 C -0.24 -6.74 10.44 -15.06 -0.16 -6.89 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 9 N -0.74 -16.95 5.03 -51.51 -0.26 -17.21 16 10 C 0.18 3.21 3.56 -65.95 -0.23 2.98 16 11 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 12 C -0.14 -2.25 6.51 -25.07 -0.16 -2.41 16 13 C -0.12 -1.34 6.19 -25.61 -0.16 -1.50 16 14 C -0.10 -1.05 2.96 -89.50 -0.26 -1.31 16 15 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 16 C 0.13 1.27 4.69 -4.04 -0.02 1.25 16 17 N -0.72 -5.90 5.29 -61.29 -0.32 -6.22 16 18 C 0.56 5.52 7.77 -12.38 -0.10 5.42 16 19 O -0.53 -7.28 16.32 5.30 0.09 -7.20 16 20 C -0.10 -0.76 5.88 -104.92 -0.62 -1.37 16 21 C -0.09 -0.50 9.46 -39.57 -0.37 -0.87 16 22 C -0.05 -0.32 10.03 -39.70 -0.40 -0.72 16 23 C 0.03 0.24 7.36 -84.95 -0.63 -0.39 16 24 N -0.25 -2.54 12.42 32.09 0.40 -2.14 16 25 N -0.01 -0.06 13.28 60.35 0.80 0.74 16 26 N -0.41 -2.47 7.08 32.31 0.23 -2.24 16 27 H 0.46 0.89 8.96 -190.23 -1.71 -0.81 16 28 C 0.02 0.13 7.40 -84.24 -0.62 -0.50 16 29 C -0.03 -0.25 9.61 -39.10 -0.38 -0.63 16 30 C -0.13 -1.73 5.98 -25.09 -0.15 -1.88 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.36 8.14 5.63 -40.82 -0.23 7.91 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.62 7.62 -51.93 -0.40 0.22 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.40 2.20 6.35 -40.82 -0.26 1.94 16 40 H 0.14 0.40 6.36 -52.49 -0.33 0.06 16 41 H 0.15 0.61 8.06 -52.48 -0.42 0.19 16 42 H 0.15 0.99 7.63 -52.49 -0.40 0.58 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.95 7.73 -51.93 -0.40 0.55 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -35.42 364.98 -8.98 -44.40 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.12 Total: 4.25 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -4.35 Total: -8.81 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 1.62 Total: -55.30 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.09 Total: -7.20 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.42 -8.98 -44.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086872509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.164 kcal (2) G-P(sol) polarization free energy of solvation -35.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds