Wall clock time and date at job start Tue Mar 31 2020 06:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47073 * 2 1 4 4 H 1.09003 * 109.87577 * 53.86685 * 3 2 1 5 5 C 1.54322 * 109.88341 * 292.85194 * 3 2 1 6 6 H 1.08997 * 110.71862 * 336.75098 * 5 3 2 7 7 N 1.46493 * 110.72381 * 100.02722 * 5 3 2 8 8 C 1.34780 * 120.00212 * 205.00061 * 7 5 3 9 9 O 1.21684 * 119.99991 * 359.97438 * 8 7 5 10 10 C 1.46813 * 120.00093 * 179.97438 * 8 7 5 11 11 C 1.40412 * 126.54143 * 359.69363 * 10 8 7 12 12 N 1.30975 * 108.76631 * 179.81683 * 11 10 8 13 13 N 1.39715 * 109.48660 * 0.44286 * 12 11 10 14 14 C 1.36351 * 133.19133 * 179.73837 * 13 12 11 15 15 C 1.35291 * 119.81110 * 180.02562 * 14 13 12 16 16 N 1.33248 * 121.26760 * 359.95569 * 15 14 13 17 17 C 1.31413 * 121.08074 * 0.02562 * 16 15 14 18 18 C 1.36824 * 107.97056 * 359.72125 * 13 12 11 19 19 C 1.55406 * 102.82528 * 218.48346 * 5 3 2 20 20 C 1.54907 * 101.66687 * 35.33499 * 19 5 3 21 21 N 1.47023 * 109.88396 * 174.88019 * 3 2 1 22 22 C 1.36934 * 125.64786 * 298.39952 * 21 3 2 23 23 H 1.08005 * 119.99815 * 345.36246 * 22 21 3 24 24 C 1.38815 * 120.00173 * 165.36421 * 22 21 3 25 25 N 1.31618 * 119.99701 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00108 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47210 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.47008 * 119.99913 * 26 24 22 29 29 H 1.48496 * 109.46999 * 240.00069 * 26 24 22 30 30 H 1.08994 * 109.47276 * 65.52179 * 1 2 3 31 31 H 1.09004 * 109.47082 * 185.52498 * 1 2 3 32 32 H 1.09001 * 109.47122 * 305.52334 * 1 2 3 33 33 H 1.08997 * 109.46944 * 240.00169 * 2 1 3 34 34 H 1.09000 * 109.47153 * 119.99986 * 2 1 3 35 35 H 0.97009 * 120.00182 * 24.99731 * 7 5 3 36 36 H 1.08006 * 125.61813 * 359.97101 * 11 10 8 37 37 H 1.08007 * 120.09387 * 359.97438 * 14 13 12 38 38 H 1.07999 * 119.36774 * 179.97438 * 15 14 13 39 39 H 1.08005 * 120.17421 * 180.02562 * 17 16 15 40 40 H 1.09005 * 110.88981 * 277.26034 * 19 5 3 41 41 H 1.09001 * 111.03650 * 153.47471 * 19 5 3 42 42 H 1.09002 * 110.36150 * 204.23523 * 20 19 5 43 43 H 1.08998 * 110.36837 * 81.91735 * 20 19 5 44 44 H 0.97001 * 119.99849 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9934 0.8279 5 6 1.6836 2.1252 -1.3373 6 1 1.5339 1.3829 -2.1213 7 7 0.4962 2.9699 -1.1878 8 6 -0.2743 3.2452 -2.2589 9 8 0.0167 2.7924 -3.3502 10 6 -1.4646 4.0914 -2.1089 11 6 -1.9293 4.6777 -0.9206 12 7 -3.0139 5.3627 -1.1848 13 7 -3.3158 5.2515 -2.5444 14 6 -4.3172 5.7530 -3.3221 15 6 -4.3500 5.4664 -4.6439 16 7 -3.4181 4.6996 -5.2087 17 6 -2.4339 4.1943 -4.4993 18 6 -2.3597 4.4642 -3.1261 19 6 2.9427 2.9876 -1.6307 20 6 4.0755 2.0852 -1.0810 21 7 3.5050 1.4549 0.1234 22 6 4.2210 0.9618 1.1813 23 1 3.7223 0.7354 2.1122 24 6 5.5878 0.7530 1.0574 25 7 6.1953 1.0285 -0.0771 26 14 6.5646 0.0810 2.5009 27 1 5.6543 -0.1453 3.6522 28 1 7.2002 -1.2038 2.1132 29 1 7.6156 1.0573 2.8847 30 1 -0.3633 0.4258 -0.9352 31 1 -0.3633 -1.0229 0.0989 32 1 -0.3633 0.5971 0.8364 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.2643 3.3312 -0.3179 36 1 -1.4669 4.5818 0.0507 37 1 -5.0825 6.3766 -2.8840 38 1 -5.1466 5.8671 -5.2531 39 1 -1.6862 3.5749 -4.9723 40 1 2.9001 3.9337 -1.0911 41 1 3.0614 3.1552 -2.7012 42 1 4.9458 2.6867 -0.8183 43 1 4.3456 1.3259 -1.8148 44 1 7.1505 0.8830 -0.1636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087603466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:27 Heat of formation + Delta-G solvation = 108.302227 kcal Electronic energy + Delta-G solvation = -27936.078115 eV Core-core repulsion = 24084.380999 eV Total energy + Delta-G solvation = -3851.697116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.83446 -39.63905 -38.60691 -37.55045 -34.08108 -33.92385 -32.74426 -31.76262 -31.65694 -29.87091 -28.78770 -26.60063 -25.19022 -24.78886 -23.77165 -22.89234 -22.01774 -20.53814 -20.16793 -19.65094 -18.62496 -17.76714 -16.88259 -16.80639 -16.45413 -16.07427 -15.55771 -15.38313 -14.76718 -14.48679 -14.07080 -14.04995 -13.75515 -13.70645 -13.42967 -13.30579 -13.09735 -12.68000 -12.01704 -11.92954 -11.65075 -11.57602 -11.25055 -11.11245 -10.89460 -10.83539 -10.60836 -10.43681 -10.38112 -10.27021 -10.21981 -10.04913 -9.77480 -9.67474 -9.65334 -8.68157 -8.57913 -8.20731 -6.80278 -5.75489 -3.11726 0.00742 0.43513 1.51907 1.80479 2.89006 3.27118 3.38510 3.44515 3.46605 3.48138 3.74842 3.79937 3.87423 4.38715 4.48159 4.54746 4.67059 4.95194 5.02826 5.15467 5.35145 5.37100 5.52670 5.55698 5.75115 5.77289 5.81091 5.83202 5.90439 6.04859 6.08236 6.25034 6.31969 6.43244 6.48634 6.58586 6.69785 6.75973 6.87128 6.96962 7.16079 7.19783 7.52064 7.61808 7.74850 7.79757 8.26453 8.42240 9.18233 9.79260 10.47114 11.36470 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027268 B = 0.002624 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.589714 B =10669.033277 C =10885.401020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.140 3.860 6 H 0.097 0.903 7 N -0.707 5.707 8 C 0.595 3.405 9 O -0.548 6.548 10 C -0.266 4.266 11 C 0.114 3.886 12 N -0.303 5.303 13 N -0.249 5.249 14 C 0.062 3.938 15 C 0.027 3.973 16 N -0.446 5.446 17 C 0.171 3.829 18 C 0.092 3.908 19 C -0.156 4.156 20 C 0.174 3.826 21 N -0.594 5.594 22 C -0.227 4.227 23 H 0.075 0.925 24 C -0.004 4.004 25 N -0.916 5.916 26 Si 0.909 3.091 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.395 0.605 36 H 0.205 0.795 37 H 0.181 0.819 38 H 0.186 0.814 39 H 0.198 0.802 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.899 9.091 -5.372 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.052 3.948 4 H 0.052 0.948 5 C 0.035 3.965 6 H 0.115 0.885 7 N -0.356 5.356 8 C 0.382 3.618 9 O -0.426 6.426 10 C -0.284 4.284 11 C -0.065 4.065 12 N -0.127 5.127 13 N -0.017 5.017 14 C -0.067 4.067 15 C -0.115 4.115 16 N -0.158 5.158 17 C -0.008 4.008 18 C -0.031 4.031 19 C -0.196 4.196 20 C 0.049 3.951 21 N -0.319 5.319 22 C -0.355 4.355 23 H 0.093 0.907 24 C -0.201 4.201 25 N -0.562 5.562 26 Si 0.740 3.260 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.218 1.218 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.230 0.770 36 H 0.222 0.778 37 H 0.199 0.801 38 H 0.203 0.797 39 H 0.215 0.785 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.046 0.954 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.563 9.419 -6.365 24.376 hybrid contribution 1.024 -0.458 1.867 2.178 sum -20.539 8.961 -4.498 22.855 Atomic orbital electron populations 1.21768 0.97277 1.00462 1.00929 1.22017 0.93552 0.99183 1.02404 1.21080 0.87233 0.93415 0.93024 0.94782 1.22158 0.83030 0.92384 0.98890 0.88532 1.45783 1.27363 1.51954 1.10525 1.16803 0.81084 0.79436 0.84526 1.90772 1.72625 1.53490 1.25741 1.19934 1.02766 1.13777 0.91925 1.24275 0.91455 0.91384 0.99338 1.77698 1.19982 1.27507 0.87478 1.46221 1.17106 1.30383 1.07984 1.22647 0.92267 1.00379 0.91413 1.22464 0.99658 0.98558 0.90785 1.68300 1.01689 1.07444 1.38334 1.23412 0.95527 0.95193 0.86646 1.20402 0.91495 0.95635 0.95601 1.23475 0.96624 0.99077 1.00429 1.21430 0.92992 0.93111 0.87596 1.44451 0.98526 1.69182 1.19696 1.18976 0.90075 1.36210 0.90249 0.90674 1.24909 0.97133 1.00982 0.97046 1.69938 1.09276 1.53086 1.23908 0.86095 0.80039 0.78446 0.81469 1.20463 1.21715 1.21781 0.93263 0.93767 0.93490 0.92400 0.91693 0.77044 0.77813 0.80145 0.79702 0.78509 0.92069 0.91842 0.90846 0.95392 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.65 37.16 0.36 -1.76 16 2 C -0.13 -2.39 5.43 -26.73 -0.15 -2.53 16 3 C 0.16 3.06 2.91 -66.95 -0.19 2.87 16 4 H 0.03 0.63 7.71 -51.93 -0.40 0.23 16 5 C 0.14 2.41 2.10 -65.96 -0.14 2.27 16 6 H 0.10 1.82 7.18 -51.93 -0.37 1.44 16 7 N -0.71 -9.68 4.96 -53.17 -0.26 -9.94 16 8 C 0.59 8.53 7.79 -12.79 -0.10 8.43 16 9 O -0.55 -9.46 15.45 5.20 0.08 -9.38 16 10 C -0.27 -3.23 6.16 -104.75 -0.65 -3.87 16 11 C 0.11 1.15 11.44 -17.10 -0.20 0.96 16 12 N -0.30 -3.36 12.60 30.76 0.39 -2.97 16 13 N -0.25 -2.63 3.91 -10.51 -0.04 -2.67 16 14 C 0.06 0.44 11.24 -16.59 -0.19 0.25 16 15 C 0.03 0.18 11.07 -17.99 -0.20 -0.02 16 16 N -0.45 -4.39 10.44 -13.26 -0.14 -4.53 16 17 C 0.17 1.88 10.98 -17.01 -0.19 1.69 16 18 C 0.09 1.08 6.77 -84.06 -0.57 0.51 16 19 C -0.16 -2.95 6.78 -24.45 -0.17 -3.12 16 20 C 0.17 4.10 5.41 -2.53 -0.01 4.09 16 21 N -0.59 -14.29 3.13 -162.58 -0.51 -14.79 16 22 C -0.23 -6.02 9.71 -15.06 -0.15 -6.16 16 23 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 24 C 0.00 -0.10 5.47 -17.43 -0.10 -0.20 16 25 N -0.92 -26.26 10.57 55.49 0.59 -25.67 16 26 Si 0.91 21.58 29.55 -169.99 -5.02 16.55 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H 0.05 0.71 7.47 -51.93 -0.39 0.32 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.12 8.02 -51.93 -0.42 0.71 16 34 H 0.06 1.27 7.84 -51.93 -0.41 0.87 16 35 H 0.40 4.38 7.29 -40.82 -0.30 4.08 16 36 H 0.21 1.33 7.46 -52.48 -0.39 0.93 16 37 H 0.18 0.64 8.06 -52.48 -0.42 0.21 16 38 H 0.19 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.20 2.15 7.21 -52.48 -0.38 1.77 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.07 1.93 6.93 -51.93 -0.36 1.57 16 43 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -33.11 364.85 -7.96 -41.07 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.91 Total: 3.43 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -2.62 Total: 3.40 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.02 Total: -60.57 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.11 -7.96 -41.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087603466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.374 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds