Wall clock time and date at job start Tue Mar 31 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 H 1.08997 * 110.00169 * 304.62618 * 3 2 1 5 5 C 1.54337 * 109.99349 * 183.58576 * 3 2 1 6 6 H 1.09009 * 110.51408 * 336.98171 * 5 3 2 7 7 N 1.46497 * 110.84860 * 100.19673 * 5 3 2 8 8 C 1.34773 * 119.99897 * 200.14385 * 7 5 3 9 9 O 1.21705 * 120.00582 * 0.02562 * 8 7 5 10 10 C 1.46677 * 120.00086 * 180.02562 * 8 7 5 11 11 C 1.40330 * 126.55824 * 359.69045 * 10 8 7 12 12 N 1.31000 * 108.78349 * 179.85479 * 11 10 8 13 13 N 1.39905 * 109.55290 * 0.41646 * 12 11 10 14 14 N 1.40026 * 132.51800 * 179.73847 * 13 12 11 15 15 C 1.30840 * 120.65375 * 179.97438 * 14 13 12 16 16 C 1.39726 * 120.97764 * 0.02562 * 15 14 13 17 17 C 1.36555 * 119.94199 * 359.97438 * 16 15 14 18 18 C 1.36754 * 107.87416 * 359.73484 * 13 12 11 19 19 C 1.55156 * 103.02194 * 218.66980 * 5 3 2 20 20 C 1.54910 * 101.58094 * 35.30826 * 19 5 3 21 21 N 1.47029 * 109.87840 * 65.71935 * 3 2 1 22 22 C 1.36929 * 125.64715 * 298.39367 * 21 3 2 23 23 H 1.07995 * 120.00262 * 333.70687 * 22 21 3 24 24 C 1.38817 * 119.99616 * 153.71303 * 22 21 3 25 25 N 1.31623 * 119.99847 * 334.82944 * 24 22 21 26 26 Si 1.86801 * 120.00106 * 154.83543 * 24 22 21 27 27 H 1.48500 * 109.46938 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47159 * 239.99924 * 26 24 22 29 29 H 1.48497 * 109.47066 * 119.99285 * 26 24 22 30 30 H 1.09003 * 109.46659 * 291.79177 * 1 2 3 31 31 H 1.09001 * 109.47173 * 51.78393 * 1 2 3 32 32 H 1.09000 * 109.47494 * 171.78859 * 1 2 3 33 33 H 1.09002 * 109.46507 * 240.00312 * 2 1 3 34 34 H 1.08995 * 109.47359 * 120.00506 * 2 1 3 35 35 H 0.97003 * 119.99677 * 20.15469 * 7 5 3 36 36 H 1.08004 * 125.60876 * 0.02562 * 11 10 8 37 37 H 1.08004 * 119.50612 * 179.97438 * 15 14 13 38 38 H 1.07999 * 120.02776 * 180.02562 * 16 15 14 39 39 H 1.08000 * 120.44733 * 180.02562 * 17 16 15 40 40 H 1.09000 * 111.00497 * 277.23103 * 19 5 3 41 41 H 1.08995 * 111.00085 * 153.37724 * 19 5 3 42 42 H 1.08998 * 110.36323 * 204.15638 * 20 19 5 43 43 H 1.08998 * 110.37052 * 81.82802 * 20 19 5 44 44 H 0.96994 * 120.00061 * 353.73735 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5807 1.4574 -0.0907 6 1 3.9935 0.5134 0.2652 7 7 4.0196 1.7329 -1.4610 8 6 5.2661 1.3984 -1.8493 9 8 6.0270 0.8672 -1.0618 10 6 5.7059 1.6747 -3.2211 11 6 4.9457 2.2722 -4.2381 12 7 5.6793 2.3539 -5.3204 13 7 6.9438 1.8095 -5.0712 14 7 8.0795 1.6479 -5.8741 15 6 9.1639 1.0963 -5.3926 16 6 9.2186 0.6538 -4.0684 17 6 8.1295 0.7955 -3.2569 18 6 6.9694 1.3856 -3.7712 19 6 3.9754 2.6210 0.8567 20 6 2.9035 2.4946 1.9679 21 7 1.6707 2.1033 1.2604 22 6 0.3933 2.3150 1.7059 23 1 -0.4192 2.3937 0.9989 24 6 0.1428 2.4287 3.0666 25 7 0.9579 1.8681 3.9349 26 14 -1.3511 3.3769 3.6653 27 1 -2.1014 3.9067 2.4984 28 1 -0.9097 4.5057 4.5233 29 1 -2.2296 2.4726 4.4499 30 1 -0.3633 0.3815 0.9543 31 1 -0.3633 0.6357 -0.8074 32 1 -0.3634 -1.0171 -0.1468 33 1 1.8932 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.4132 2.1561 -2.0887 36 1 3.9248 2.6117 -4.1434 37 1 10.0291 0.9804 -6.0285 38 1 10.1217 0.2010 -3.6867 39 1 8.1629 0.4568 -2.2319 40 1 3.8993 3.5820 0.3479 41 1 4.9767 2.4730 1.2611 42 1 2.7645 3.4512 2.4714 43 1 3.1896 1.7254 2.6852 44 1 1.6809 1.3006 3.6250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087604664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:21 Heat of formation + Delta-G solvation = 126.299374 kcal Electronic energy + Delta-G solvation = -27834.379950 eV Core-core repulsion = 23983.463249 eV Total energy + Delta-G solvation = -3850.916701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -42.19778 -39.61496 -38.30941 -37.68327 -34.25082 -33.58255 -32.58453 -32.07647 -31.46506 -29.94590 -28.47860 -26.87252 -25.17594 -24.67176 -23.65626 -22.73280 -21.76893 -20.59666 -20.24823 -19.49950 -18.46998 -17.77800 -17.33613 -16.92950 -16.34079 -16.23460 -15.90963 -14.65917 -14.62373 -14.45231 -14.24310 -13.80775 -13.79133 -13.56612 -13.15259 -12.99731 -12.92189 -12.85146 -12.40499 -12.10512 -11.81117 -11.62884 -11.24140 -11.07554 -10.90221 -10.86128 -10.73815 -10.47103 -10.23843 -10.10530 -10.08372 -10.06963 -9.86037 -9.78368 -9.42823 -8.83111 -8.44103 -8.38834 -6.90217 -6.04851 -3.21766 -0.18332 0.57668 0.99392 1.82293 2.58031 3.25155 3.41281 3.50699 3.53577 3.66136 3.77964 3.95120 4.11327 4.14297 4.47704 4.57361 4.73596 4.83168 4.99653 5.17923 5.34332 5.35970 5.41929 5.44024 5.52123 5.64419 5.71439 5.86640 5.94165 5.98235 6.08078 6.16938 6.30698 6.41028 6.51552 6.58569 6.67815 6.79767 6.89950 6.95670 7.00008 7.06429 7.11625 7.33944 7.66452 7.88372 8.34138 8.50213 9.02470 9.79670 10.38384 11.22961 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.002582 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.532201 B =10843.473239 C =11112.593007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.156 3.844 4 H 0.037 0.963 5 C 0.138 3.862 6 H 0.093 0.907 7 N -0.709 5.709 8 C 0.596 3.404 9 O -0.550 6.550 10 C -0.262 4.262 11 C 0.096 3.904 12 N -0.253 5.253 13 N -0.174 5.174 14 N -0.217 5.217 15 C 0.118 3.882 16 C -0.162 4.162 17 C -0.022 4.022 18 C 0.105 3.895 19 C -0.144 4.144 20 C 0.143 3.857 21 N -0.590 5.590 22 C -0.324 4.324 23 H 0.064 0.936 24 C -0.024 4.024 25 N -0.914 5.914 26 Si 1.068 2.932 27 H -0.292 1.292 28 H -0.291 1.291 29 H -0.294 1.294 30 H 0.092 0.908 31 H 0.038 0.962 32 H 0.028 0.972 33 H 0.039 0.961 34 H 0.055 0.945 35 H 0.397 0.603 36 H 0.209 0.791 37 H 0.207 0.793 38 H 0.161 0.839 39 H 0.172 0.828 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.030 0.970 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.286 -2.221 -16.970 22.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.049 3.951 4 H 0.055 0.945 5 C 0.034 3.966 6 H 0.111 0.889 7 N -0.358 5.358 8 C 0.383 3.617 9 O -0.429 6.429 10 C -0.279 4.279 11 C -0.085 4.085 12 N -0.078 5.078 13 N -0.041 5.041 14 N -0.030 5.030 15 C -0.075 4.075 16 C -0.187 4.187 17 C -0.050 4.050 18 C -0.022 4.022 19 C -0.183 4.183 20 C 0.018 3.982 21 N -0.316 5.316 22 C -0.452 4.452 23 H 0.081 0.919 24 C -0.227 4.227 25 N -0.554 5.554 26 Si 0.898 3.102 27 H -0.218 1.218 28 H -0.217 1.217 29 H -0.222 1.222 30 H 0.110 0.890 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.232 0.768 36 H 0.225 0.775 37 H 0.224 0.776 38 H 0.178 0.822 39 H 0.189 0.811 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.530 -1.177 -17.185 22.535 hybrid contribution 0.703 -1.017 -0.167 1.248 sum 15.233 -2.195 -17.352 23.193 Atomic orbital electron populations 1.21892 0.95660 0.98848 1.04212 1.21880 0.97063 0.97592 0.99673 1.21200 0.89631 0.92332 0.91944 0.94528 1.22093 0.95536 0.99119 0.79897 0.88857 1.45780 1.13679 1.62212 1.14137 1.16824 0.81931 0.78010 0.84968 1.90761 1.53706 1.44238 1.54185 1.19921 0.93940 1.17055 0.97009 1.24352 0.99958 0.95181 0.88988 1.77714 0.86030 1.21354 1.22655 1.50957 1.08952 1.38215 1.05929 1.75880 0.91836 1.17298 1.17955 1.24319 0.95229 0.91906 0.95998 1.21751 1.00793 1.02286 0.93835 1.21241 0.88863 0.92444 1.02465 1.19764 0.96331 0.99101 0.86964 1.23191 0.99367 0.97789 0.97982 1.21549 0.85314 0.98594 0.92783 1.44520 1.01910 1.65370 1.19775 1.19641 0.83771 1.49177 0.92645 0.91867 1.25824 1.03953 1.00577 0.92366 1.70697 1.19075 1.29209 1.36442 0.83483 0.75097 0.76398 0.75190 1.21800 1.21739 1.22171 0.88967 0.94282 0.95245 0.94274 0.92579 0.76845 0.77494 0.77623 0.82162 0.81051 0.91602 0.91548 0.93158 0.95263 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.98 37.16 0.33 -2.54 16 2 C -0.12 -2.32 5.47 -26.73 -0.15 -2.47 16 3 C 0.16 3.02 3.00 -66.94 -0.20 2.82 16 4 H 0.04 0.69 7.69 -51.93 -0.40 0.30 16 5 C 0.14 2.39 2.76 -66.09 -0.18 2.21 16 6 H 0.09 1.76 7.40 -51.92 -0.38 1.37 16 7 N -0.71 -10.00 5.20 -53.32 -0.28 -10.28 16 8 C 0.60 8.82 7.78 -12.86 -0.10 8.72 16 9 O -0.55 -9.62 15.50 5.18 0.08 -9.53 16 10 C -0.26 -3.40 6.16 -104.73 -0.65 -4.04 16 11 C 0.10 1.08 11.44 -17.12 -0.20 0.88 16 12 N -0.25 -3.37 12.61 30.75 0.39 -2.98 16 13 N -0.17 -2.25 5.25 32.44 0.17 -2.08 16 14 N -0.22 -2.29 11.96 30.60 0.37 -1.92 16 15 C 0.12 0.68 11.28 -17.42 -0.20 0.49 16 16 C -0.16 -0.91 10.04 -39.63 -0.40 -1.31 16 17 C -0.02 -0.21 9.75 -39.55 -0.39 -0.60 16 18 C 0.10 1.30 6.83 -84.06 -0.57 0.72 16 19 C -0.14 -2.64 6.77 -24.58 -0.17 -2.80 16 20 C 0.14 3.23 5.56 -2.53 -0.01 3.21 16 21 N -0.59 -13.86 2.92 -162.56 -0.47 -14.34 16 22 C -0.32 -8.46 7.22 -15.06 -0.11 -8.56 16 23 H 0.06 1.66 7.24 -52.49 -0.38 1.28 16 24 C -0.02 -0.66 5.18 -17.43 -0.09 -0.75 16 25 N -0.91 -26.73 13.05 55.49 0.72 -26.00 16 26 Si 1.07 24.75 29.99 -169.99 -5.10 19.65 16 27 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 30 H 0.09 2.10 5.52 -51.93 -0.29 1.81 16 31 H 0.04 0.71 8.13 -51.93 -0.42 0.28 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.40 4.57 7.24 -40.82 -0.30 4.27 16 36 H 0.21 1.52 7.46 -52.48 -0.39 1.12 16 37 H 0.21 0.16 8.06 -52.48 -0.42 -0.26 16 38 H 0.16 0.28 8.06 -52.49 -0.42 -0.14 16 39 H 0.17 1.60 7.18 -52.49 -0.38 1.22 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.03 0.72 6.73 -51.93 -0.35 0.37 16 44 H 0.27 7.96 6.20 -40.82 -0.25 7.71 16 LS Contribution 361.77 15.07 5.45 5.45 Total: -1.00 -34.69 361.77 -7.46 -42.15 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.72 Total: 3.90 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.07 Total: -4.02 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.90 Total: -57.60 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.10 Total: 19.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.69 -7.46 -42.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087604664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.446 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds