Wall clock time and date at job start Tue Mar 31 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 H 1.08997 * 110.00169 * 304.62618 * 3 2 1 5 5 C 1.54337 * 109.99349 * 183.58576 * 3 2 1 6 6 H 1.09009 * 110.51408 * 336.98171 * 5 3 2 7 7 N 1.46497 * 110.84860 * 100.19673 * 5 3 2 8 8 C 1.34773 * 119.99897 * 200.14385 * 7 5 3 9 9 O 1.21705 * 120.00582 * 0.02562 * 8 7 5 10 10 C 1.46677 * 120.00086 * 180.02562 * 8 7 5 11 11 C 1.40330 * 126.55824 * 359.69045 * 10 8 7 12 12 N 1.31000 * 108.78349 * 179.85479 * 11 10 8 13 13 N 1.39905 * 109.55290 * 0.41646 * 12 11 10 14 14 N 1.40026 * 132.51800 * 179.73847 * 13 12 11 15 15 C 1.30840 * 120.65375 * 179.97438 * 14 13 12 16 16 C 1.39726 * 120.97764 * 0.02562 * 15 14 13 17 17 C 1.36555 * 119.94199 * 359.97438 * 16 15 14 18 18 C 1.36754 * 107.87416 * 359.73484 * 13 12 11 19 19 C 1.55156 * 103.02194 * 218.66980 * 5 3 2 20 20 C 1.54910 * 101.58094 * 35.30826 * 19 5 3 21 21 N 1.47029 * 109.87840 * 65.71935 * 3 2 1 22 22 C 1.36929 * 125.64715 * 298.39367 * 21 3 2 23 23 H 1.07995 * 120.00262 * 333.70687 * 22 21 3 24 24 C 1.38817 * 119.99616 * 153.71303 * 22 21 3 25 25 N 1.31623 * 119.99847 * 334.82944 * 24 22 21 26 26 Si 1.86801 * 120.00106 * 154.83543 * 24 22 21 27 27 H 1.48500 * 109.46938 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47159 * 239.99924 * 26 24 22 29 29 H 1.48497 * 109.47066 * 119.99285 * 26 24 22 30 30 H 1.09003 * 109.46659 * 291.79177 * 1 2 3 31 31 H 1.09001 * 109.47173 * 51.78393 * 1 2 3 32 32 H 1.09000 * 109.47494 * 171.78859 * 1 2 3 33 33 H 1.09002 * 109.46507 * 240.00312 * 2 1 3 34 34 H 1.08995 * 109.47359 * 120.00506 * 2 1 3 35 35 H 0.97003 * 119.99677 * 20.15469 * 7 5 3 36 36 H 1.08004 * 125.60876 * 0.02562 * 11 10 8 37 37 H 1.08004 * 119.50612 * 179.97438 * 15 14 13 38 38 H 1.07999 * 120.02776 * 180.02562 * 16 15 14 39 39 H 1.08000 * 120.44733 * 180.02562 * 17 16 15 40 40 H 1.09000 * 111.00497 * 277.23103 * 19 5 3 41 41 H 1.08995 * 111.00085 * 153.37724 * 19 5 3 42 42 H 1.08998 * 110.36323 * 204.15638 * 20 19 5 43 43 H 1.08998 * 110.37052 * 81.82802 * 20 19 5 44 44 H 0.96994 * 120.00061 * 353.73735 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5807 1.4574 -0.0907 6 1 3.9935 0.5134 0.2652 7 7 4.0196 1.7329 -1.4610 8 6 5.2661 1.3984 -1.8493 9 8 6.0270 0.8672 -1.0618 10 6 5.7059 1.6747 -3.2211 11 6 4.9457 2.2722 -4.2381 12 7 5.6793 2.3539 -5.3204 13 7 6.9438 1.8095 -5.0712 14 7 8.0795 1.6479 -5.8741 15 6 9.1639 1.0963 -5.3926 16 6 9.2186 0.6538 -4.0684 17 6 8.1295 0.7955 -3.2569 18 6 6.9694 1.3856 -3.7712 19 6 3.9754 2.6210 0.8567 20 6 2.9035 2.4946 1.9679 21 7 1.6707 2.1033 1.2604 22 6 0.3933 2.3150 1.7059 23 1 -0.4192 2.3937 0.9989 24 6 0.1428 2.4287 3.0666 25 7 0.9579 1.8681 3.9349 26 14 -1.3511 3.3769 3.6653 27 1 -2.1014 3.9067 2.4984 28 1 -0.9097 4.5057 4.5233 29 1 -2.2296 2.4726 4.4499 30 1 -0.3633 0.3815 0.9543 31 1 -0.3633 0.6357 -0.8074 32 1 -0.3634 -1.0171 -0.1468 33 1 1.8932 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.4132 2.1561 -2.0887 36 1 3.9248 2.6117 -4.1434 37 1 10.0291 0.9804 -6.0285 38 1 10.1217 0.2010 -3.6867 39 1 8.1629 0.4568 -2.2319 40 1 3.8993 3.5820 0.3479 41 1 4.9767 2.4730 1.2611 42 1 2.7645 3.4512 2.4714 43 1 3.1896 1.7254 2.6852 44 1 1.6809 1.3006 3.6250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087604664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:20 Heat of formation + Delta-G solvation = 101.772112 kcal Electronic energy + Delta-G solvation = -27835.443532 eV Core-core repulsion = 23983.463249 eV Total energy + Delta-G solvation = -3851.980283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.98974 -40.90312 -39.40255 -38.82407 -35.75037 -34.30086 -34.26835 -33.66898 -32.28973 -31.05551 -30.08175 -28.41163 -26.38127 -25.83328 -24.72548 -23.67526 -23.39084 -21.98302 -21.63582 -20.97065 -19.43246 -19.18071 -18.47801 -17.82947 -17.47041 -17.06331 -16.86274 -16.12146 -16.02844 -15.63094 -15.53325 -15.27728 -15.08871 -14.78006 -14.58702 -14.41730 -14.01087 -13.77849 -13.62065 -13.55250 -13.31428 -12.80926 -12.65752 -12.64033 -12.51268 -12.14942 -11.96531 -11.85333 -11.79588 -11.71094 -11.55866 -11.53665 -11.35843 -11.01376 -10.86249 -10.42127 -10.10822 -9.31491 -8.89580 -8.15108 -5.29734 -0.85192 -0.08643 0.27858 0.92848 1.61622 1.68910 1.83764 1.92253 2.08915 2.39040 2.69723 3.10148 3.28907 3.29447 3.39342 3.51069 3.59265 3.76067 3.80798 3.84533 4.04453 4.14424 4.24123 4.28999 4.30630 4.41526 4.51091 4.59753 4.70657 4.82901 4.87929 4.93218 4.96882 5.03592 5.06235 5.08858 5.14383 5.18135 5.26593 5.36610 5.59207 5.67219 5.87714 6.11225 6.30605 6.42296 6.56372 6.99241 7.22232 7.77551 8.39300 9.11108 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.002582 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.532201 B =10843.473239 C =11112.593007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C 0.155 3.845 4 H 0.055 0.945 5 C 0.156 3.844 6 H 0.078 0.922 7 N -0.698 5.698 8 C 0.601 3.399 9 O -0.582 6.582 10 C -0.296 4.296 11 C 0.110 3.890 12 N -0.291 5.291 13 N -0.189 5.189 14 N -0.256 5.256 15 C 0.134 3.866 16 C -0.118 4.118 17 C -0.065 4.065 18 C 0.102 3.898 19 C -0.128 4.128 20 C 0.148 3.852 21 N -0.607 5.607 22 C -0.309 4.309 23 H 0.064 0.936 24 C -0.082 4.082 25 N -0.950 5.950 26 Si 1.114 2.886 27 H -0.269 1.269 28 H -0.294 1.294 29 H -0.296 1.296 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.029 0.971 35 H 0.412 0.588 36 H 0.239 0.761 37 H 0.263 0.737 38 H 0.210 0.790 39 H 0.166 0.834 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.024 0.976 43 H 0.003 0.997 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.956 -2.347 -19.913 26.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C 0.048 3.952 4 H 0.072 0.928 5 C 0.050 3.950 6 H 0.096 0.904 7 N -0.349 5.349 8 C 0.390 3.610 9 O -0.464 6.464 10 C -0.313 4.313 11 C -0.071 4.071 12 N -0.115 5.115 13 N -0.054 5.054 14 N -0.069 5.069 15 C -0.057 4.057 16 C -0.143 4.143 17 C -0.092 4.092 18 C -0.025 4.025 19 C -0.167 4.167 20 C 0.022 3.978 21 N -0.332 5.332 22 C -0.438 4.438 23 H 0.082 0.918 24 C -0.278 4.278 25 N -0.593 5.593 26 Si 0.940 3.060 27 H -0.194 1.194 28 H -0.221 1.221 29 H -0.223 1.223 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.250 0.750 36 H 0.255 0.745 37 H 0.279 0.721 38 H 0.227 0.773 39 H 0.184 0.816 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.043 0.957 43 H 0.021 0.979 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.188 -1.289 -20.206 25.923 hybrid contribution 0.447 -1.083 0.585 1.309 sum 16.635 -2.372 -19.621 25.833 Atomic orbital electron populations 1.21773 0.95658 1.00185 1.02380 1.21819 0.96966 0.97188 0.99811 1.21330 0.91064 0.92443 0.90322 0.92762 1.21649 0.93962 0.97910 0.81460 0.90352 1.45511 1.14036 1.62447 1.12918 1.17020 0.81421 0.77048 0.85474 1.90738 1.54565 1.45789 1.55283 1.19718 0.95157 1.20072 0.96338 1.24805 1.00818 0.93667 0.87818 1.77598 0.86956 1.23081 1.23892 1.51129 1.09482 1.38484 1.06258 1.75940 0.92476 1.19597 1.18857 1.25393 0.94984 0.88618 0.96679 1.22369 1.00753 0.98294 0.92848 1.21392 0.89585 0.95012 1.03212 1.20177 0.97017 0.98316 0.87033 1.23038 0.98028 0.98937 0.96734 1.21382 0.86519 0.96282 0.93594 1.44734 1.01498 1.66203 1.20806 1.19824 0.84802 1.46712 0.92489 0.91791 1.27029 1.05940 1.01605 0.93222 1.70815 1.20242 1.31373 1.36894 0.82866 0.72659 0.75105 0.75415 1.19414 1.22084 1.22289 0.92882 0.92929 0.93242 0.91266 0.95182 0.75041 0.74481 0.72118 0.77300 0.81632 0.90339 0.91002 0.95743 0.97927 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.98 71.98 0.65 -4.71 16 2 C -0.12 -4.40 5.47 30.59 0.17 -4.23 16 3 C 0.15 5.87 3.00 45.34 0.14 6.01 16 4 H 0.05 1.92 7.69 -2.39 -0.02 1.90 16 5 C 0.16 5.33 2.76 46.18 0.13 5.46 16 6 H 0.08 2.97 7.40 -2.38 -0.02 2.95 16 7 N -0.70 -18.83 5.20 -440.84 -2.29 -21.12 16 8 C 0.60 17.49 7.78 86.45 0.67 18.17 16 9 O -0.58 -20.46 15.50 -4.36 -0.07 -20.53 16 10 C -0.30 -7.51 6.16 -19.93 -0.12 -7.64 16 11 C 0.11 2.37 11.44 85.33 0.98 3.34 16 12 N -0.29 -7.60 12.61 -56.63 -0.71 -8.31 16 13 N -0.19 -4.70 5.25 -51.29 -0.27 -4.97 16 14 N -0.26 -4.82 11.96 -57.11 -0.68 -5.50 16 15 C 0.13 0.97 11.28 85.20 0.96 1.93 16 16 C -0.12 -0.83 10.04 22.24 0.22 -0.60 16 17 C -0.06 -1.11 9.75 22.29 0.22 -0.89 16 18 C 0.10 2.47 6.83 39.42 0.27 2.74 16 19 C -0.13 -4.71 6.77 31.99 0.22 -4.49 16 20 C 0.15 6.94 5.56 86.85 0.48 7.43 16 21 N -0.61 -28.98 2.92 -668.22 -1.95 -30.93 16 22 C -0.31 -16.34 7.22 84.04 0.61 -15.73 16 23 H 0.06 3.34 7.24 -2.91 -0.02 3.32 16 24 C -0.08 -4.57 5.18 84.86 0.44 -4.13 16 25 N -0.95 -57.95 13.05 21.65 0.28 -57.66 16 26 Si 1.11 50.75 29.99 68.60 2.06 52.81 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 29 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 30 H 0.05 2.42 5.52 -2.39 -0.01 2.41 16 31 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.41 8.59 7.24 -92.71 -0.67 7.92 16 36 H 0.24 3.03 7.46 -2.91 -0.02 3.00 16 37 H 0.26 -1.28 8.06 -2.91 -0.02 -1.31 16 38 H 0.21 -0.59 8.06 -2.91 -0.02 -0.61 16 39 H 0.17 3.00 7.18 -2.91 -0.02 2.98 16 40 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.00 0.15 6.73 -2.39 -0.02 0.14 16 44 H 0.25 15.88 6.20 -92.71 -0.57 15.31 16 Total: -1.00 -81.14 361.77 2.95 -78.19 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.56 Total: 15.38 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 6.02 Total: 2.65 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -5.63 Total: -128.50 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.07 Total: -20.53 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.06 Total: 52.81 kcal Total: -81.14 2.95 -78.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087604664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.962 kcal (2) G-P(sol) polarization free energy of solvation -81.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds