Wall clock time and date at job start Tue Mar 31 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47358 * 2 1 4 4 H 1.09005 * 109.87387 * 53.86699 * 3 2 1 5 5 C 1.54325 * 109.88381 * 292.84962 * 3 2 1 6 6 H 1.09006 * 110.71706 * 336.75050 * 5 3 2 7 7 N 1.46501 * 110.72200 * 100.02408 * 5 3 2 8 8 C 1.34772 * 119.99995 * 205.00375 * 7 5 3 9 9 O 1.21590 * 120.00241 * 0.02562 * 8 7 5 10 10 C 1.47580 * 120.00002 * 180.02562 * 8 7 5 11 11 C 1.36484 * 125.92025 * 180.02562 * 10 8 7 12 12 N 1.36187 * 107.01230 * 180.02562 * 11 10 8 13 13 C 1.36677 * 132.44816 * 180.02562 * 12 11 10 14 14 C 1.35472 * 119.10128 * 179.97438 * 13 12 11 15 15 C 1.40301 * 119.36453 * 359.97438 * 14 13 12 16 16 N 1.31147 * 120.40464 * 359.97438 * 15 14 13 17 17 C 1.34282 * 120.94958 * 0.02562 * 16 15 14 18 18 N 1.32213 * 131.65274 * 180.34313 * 17 16 15 19 19 C 1.55403 * 102.83075 * 218.48248 * 5 3 2 20 20 C 1.54913 * 101.66650 * 35.33174 * 19 5 3 21 21 N 1.47020 * 109.88610 * 174.88059 * 3 2 1 22 22 C 1.36938 * 125.64850 * 298.39484 * 21 3 2 23 23 H 1.08000 * 119.99891 * 345.36467 * 22 21 3 24 24 C 1.38808 * 120.00181 * 165.36389 * 22 21 3 25 25 N 1.31620 * 120.00105 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00057 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47163 * 90.00275 * 26 24 22 28 28 H 1.48502 * 109.47178 * 209.99979 * 26 24 22 29 29 H 1.48498 * 109.47247 * 329.99923 * 26 24 22 30 30 H 1.09001 * 109.47217 * 185.52412 * 1 2 3 31 31 H 1.08998 * 109.46791 * 305.52553 * 1 2 3 32 32 H 1.09003 * 109.46925 * 65.52325 * 1 2 3 33 33 H 1.08994 * 109.47151 * 239.99723 * 2 1 3 34 34 H 1.09005 * 109.46948 * 119.99839 * 2 1 3 35 35 H 0.96998 * 119.99668 * 25.00240 * 7 5 3 36 36 H 1.07995 * 126.48853 * 359.97371 * 11 10 8 37 37 H 1.08002 * 120.44413 * 359.97034 * 13 12 11 38 38 H 1.08000 * 120.31658 * 179.97438 * 14 13 12 39 39 H 1.07996 * 119.79741 * 180.02562 * 15 14 13 40 40 H 1.09004 * 110.88947 * 277.26572 * 19 5 3 41 41 H 1.08993 * 111.04100 * 153.46860 * 19 5 3 42 42 H 1.09001 * 110.36983 * 204.23777 * 20 19 5 43 43 H 1.09004 * 110.36222 * 81.91171 * 20 19 5 44 44 H 0.96999 * 120.00150 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5937 1.9933 0.8279 5 6 1.6837 2.1252 -1.3374 6 1 1.5340 1.3828 -2.1214 7 7 0.4962 2.9700 -1.1879 8 6 -0.2742 3.2452 -2.2589 9 8 0.0161 2.7919 -3.3492 10 6 -1.4701 4.0967 -2.1084 11 6 -2.3317 4.4507 -3.1060 12 7 -3.2905 5.2376 -2.5438 13 6 -4.3887 5.8655 -3.0612 14 6 -5.1779 6.5973 -2.2385 15 6 -4.8510 6.6933 -0.8775 16 7 -3.7923 6.0807 -0.4043 17 6 -3.0001 5.3516 -1.2068 18 7 -1.9046 4.6533 -0.9612 19 6 2.9428 2.9875 -1.6308 20 6 4.0756 2.0852 -1.0810 21 7 3.5050 1.4548 0.1234 22 6 4.2210 0.9618 1.1814 23 1 3.7224 0.7354 2.1122 24 6 5.5877 0.7530 1.0575 25 7 6.1954 1.0284 -0.0771 26 14 6.5646 0.0810 2.5010 27 1 6.5836 -1.4024 2.4382 28 1 7.9558 0.5969 2.4403 29 1 5.9310 0.5146 3.7722 30 1 -0.3634 -1.0229 0.0989 31 1 -0.3633 0.5971 0.8364 32 1 -0.3633 0.4258 -0.9353 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.2644 3.3312 -0.3180 36 1 -2.2650 4.1621 -4.1446 37 1 -4.6240 5.7794 -4.1118 38 1 -6.0503 7.1020 -2.6266 39 1 -5.4755 7.2745 -0.2152 40 1 2.9002 3.9337 -1.0912 41 1 3.0615 3.1551 -2.7012 42 1 4.9459 2.6866 -0.8183 43 1 4.3456 1.3258 -1.8148 44 1 7.1505 0.8828 -0.1636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087640246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:10 Heat of formation + Delta-G solvation = 99.577453 kcal Electronic energy + Delta-G solvation = -27705.297427 eV Core-core repulsion = 23853.221977 eV Total energy + Delta-G solvation = -3852.075450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.40386 -39.74714 -38.47748 -37.45650 -35.05357 -33.95370 -32.68765 -31.80710 -31.30829 -29.75859 -28.91461 -26.76627 -25.57188 -24.39404 -23.66998 -23.18517 -21.92234 -20.46366 -20.09740 -19.58738 -18.71263 -18.03945 -17.07976 -16.79487 -16.74165 -16.13989 -15.78267 -14.83697 -14.73570 -14.60848 -14.43681 -13.94684 -13.90975 -13.70217 -13.52062 -13.08887 -12.80272 -12.61606 -12.27658 -11.93070 -11.86828 -11.58651 -11.07476 -10.97716 -10.83620 -10.79957 -10.54793 -10.40047 -10.33135 -10.26651 -10.03283 -9.84932 -9.65678 -9.59151 -9.58798 -8.67487 -8.56447 -8.47807 -6.74598 -5.70235 -3.06105 -0.01258 0.58090 1.76410 1.86709 3.02354 3.02742 3.36209 3.43239 3.48536 3.50046 3.50566 3.84279 3.98293 4.23102 4.52096 4.54400 4.76136 4.92919 5.05681 5.11275 5.34410 5.42652 5.57080 5.61583 5.63168 5.84394 5.86648 5.91194 5.96945 6.03621 6.14864 6.32211 6.36778 6.50339 6.54378 6.62539 6.73946 6.80662 7.02002 7.04434 7.20844 7.42343 7.56976 7.66469 7.81647 7.84541 8.31157 8.38362 9.23634 9.84531 10.52778 11.41902 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.002536 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.977039 B =11039.579558 C =11253.750229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.160 3.840 4 H 0.037 0.963 5 C 0.136 3.864 6 H 0.097 0.903 7 N -0.691 5.691 8 C 0.598 3.402 9 O -0.537 6.537 10 C 0.029 3.971 11 C -0.016 4.016 12 N -0.403 5.403 13 C 0.113 3.887 14 C -0.205 4.205 15 C 0.172 3.828 16 N -0.430 5.430 17 C 0.376 3.624 18 N -0.439 5.439 19 C -0.157 4.157 20 C 0.175 3.825 21 N -0.594 5.594 22 C -0.225 4.225 23 H 0.075 0.925 24 C -0.004 4.004 25 N -0.917 5.917 26 Si 0.910 3.090 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.408 0.592 36 H 0.201 0.799 37 H 0.178 0.822 38 H 0.167 0.833 39 H 0.185 0.815 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.028 0.972 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.349 11.682 -7.533 28.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C 0.052 3.948 4 H 0.055 0.945 5 C 0.031 3.969 6 H 0.115 0.885 7 N -0.340 5.340 8 C 0.381 3.619 9 O -0.414 6.414 10 C -0.105 4.105 11 C -0.152 4.152 12 N -0.080 5.080 13 C -0.018 4.018 14 C -0.228 4.228 15 C -0.017 4.017 16 N -0.141 5.141 17 C 0.027 3.973 18 N -0.163 5.163 19 C -0.196 4.196 20 C 0.050 3.950 21 N -0.318 5.318 22 C -0.354 4.354 23 H 0.093 0.907 24 C -0.201 4.201 25 N -0.564 5.564 26 Si 0.740 3.260 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.244 0.756 36 H 0.218 0.782 37 H 0.195 0.805 38 H 0.184 0.816 39 H 0.201 0.799 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.046 0.954 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.992 11.073 -6.630 27.243 hybrid contribution -0.303 -0.117 -0.518 0.611 sum -24.295 10.956 -7.148 27.593 Atomic orbital electron populations 1.21768 0.97255 1.00409 1.01021 1.22007 0.93562 0.99099 1.02382 1.21089 0.87214 0.93450 0.93055 0.94504 1.22238 0.83074 0.92441 0.99101 0.88508 1.45897 1.26464 1.50434 1.11199 1.16762 0.80774 0.79578 0.84747 1.90809 1.71908 1.52895 1.25792 1.20900 0.98388 1.02157 0.89043 1.22633 0.90999 1.00393 1.01126 1.43905 1.18679 1.33003 1.12430 1.22270 0.85501 0.92944 1.01114 1.21859 1.02825 1.03091 0.94992 1.23392 0.91396 0.93185 0.93755 1.67986 1.04626 1.07642 1.33878 1.21903 0.96204 1.01174 0.78034 1.70834 1.08011 1.11886 1.25553 1.23488 0.96516 0.99216 1.00418 1.21430 0.92937 0.93068 0.87606 1.44438 0.98496 1.69193 1.19711 1.18948 0.90090 1.36059 0.90264 0.90698 1.24902 0.97093 1.01054 0.97079 1.69929 1.09301 1.53177 1.23982 0.86153 0.79423 0.78783 0.81612 1.21563 1.21734 1.20640 0.93747 0.93313 0.93452 0.92424 0.91614 0.75597 0.78186 0.80504 0.81571 0.79860 0.91930 0.91823 0.90786 0.95369 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.65 37.16 0.36 -2.01 16 2 C -0.13 -2.55 5.43 -26.73 -0.15 -2.69 16 3 C 0.16 3.34 2.91 -66.96 -0.19 3.15 16 4 H 0.04 0.77 7.71 -51.93 -0.40 0.37 16 5 C 0.14 2.58 2.10 -65.96 -0.14 2.44 16 6 H 0.10 1.94 7.18 -51.93 -0.37 1.57 16 7 N -0.69 -11.55 4.96 -52.92 -0.26 -11.82 16 8 C 0.60 9.87 7.82 -12.45 -0.10 9.78 16 9 O -0.54 -9.98 16.52 5.29 0.09 -9.90 16 10 C 0.03 0.42 6.94 -83.43 -0.58 -0.16 16 11 C -0.02 -0.18 11.47 -16.25 -0.19 -0.37 16 12 N -0.40 -3.92 2.93 -64.13 -0.19 -4.11 16 13 C 0.11 0.55 11.05 -16.38 -0.18 0.37 16 14 C -0.20 -0.66 10.06 -39.79 -0.40 -1.06 16 15 C 0.17 0.96 11.27 -17.07 -0.19 0.77 16 16 N -0.43 -4.76 10.48 -13.67 -0.14 -4.90 16 17 C 0.38 4.87 8.90 -322.42 -2.87 2.00 16 18 N -0.44 -6.69 11.01 -11.03 -0.12 -6.81 16 19 C -0.16 -3.18 6.78 -24.45 -0.17 -3.35 16 20 C 0.17 4.31 5.41 -2.53 -0.01 4.30 16 21 N -0.59 -15.06 3.13 -162.57 -0.51 -15.57 16 22 C -0.23 -6.23 9.71 -15.06 -0.15 -6.37 16 23 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 24 C 0.00 -0.13 5.47 -17.43 -0.10 -0.22 16 25 N -0.92 -26.98 10.57 55.49 0.59 -26.40 16 26 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.77 7.48 -51.93 -0.39 0.38 16 33 H 0.06 1.18 8.02 -51.93 -0.42 0.76 16 34 H 0.07 1.37 7.84 -51.93 -0.41 0.96 16 35 H 0.41 6.56 8.06 -40.82 -0.33 6.24 16 36 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.18 0.17 8.06 -52.49 -0.42 -0.25 16 38 H 0.17 -0.14 8.06 -52.49 -0.42 -0.56 16 39 H 0.18 0.29 8.06 -52.49 -0.42 -0.13 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.07 2.02 6.93 -51.93 -0.36 1.66 16 43 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -35.56 367.68 -11.10 -46.66 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.02 Total: 3.54 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -5.05 Total: 6.58 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -0.64 Total: -69.61 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.56 -11.10 -46.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087640246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.236 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds