Wall clock time and date at job start Tue Mar 31 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47067 * 2 1 4 4 H 1.08997 * 109.99932 * 302.67536 * 3 2 1 5 5 C 1.54331 * 109.88146 * 181.58233 * 3 2 1 6 6 H 1.08992 * 110.87144 * 336.82094 * 5 3 2 7 7 N 1.46501 * 110.72113 * 100.02995 * 5 3 2 8 8 C 1.34773 * 119.99762 * 199.97547 * 7 5 3 9 9 O 1.21620 * 120.00390 * 359.97438 * 8 7 5 10 10 C 1.47211 * 119.99457 * 180.02562 * 8 7 5 11 11 C 1.37754 * 119.93598 * 180.02562 * 10 8 7 12 12 C 1.39858 * 119.93198 * 179.97438 * 11 10 8 13 13 C 1.36308 * 119.81506 * 0.26888 * 12 11 10 14 14 C 1.40770 * 119.70781 * 359.47082 * 13 12 11 15 15 N 1.32816 * 132.73687 * 180.21492 * 14 13 12 16 16 C 1.32377 * 109.74181 * 180.28603 * 15 14 13 17 17 N 1.31385 * 109.61639 * 359.97438 * 16 15 14 18 18 N 1.36545 * 119.88152 * 0.52615 * 14 13 12 19 19 C 1.55160 * 102.93894 * 218.38991 * 5 3 2 20 20 C 1.54911 * 101.58282 * 35.50337 * 19 5 3 21 21 N 1.47027 * 109.88313 * 63.77596 * 3 2 1 22 22 C 1.36938 * 125.64562 * 298.32544 * 21 3 2 23 23 H 1.07999 * 119.99861 * 326.04184 * 22 21 3 24 24 C 1.38807 * 120.00272 * 146.04585 * 22 21 3 25 25 N 1.31616 * 120.00053 * 162.68333 * 24 22 21 26 26 Si 1.86806 * 119.99862 * 342.69011 * 24 22 21 27 27 H 1.48496 * 109.47268 * 86.83880 * 26 24 22 28 28 H 1.48498 * 109.47053 * 206.84357 * 26 24 22 29 29 H 1.48500 * 109.46798 * 326.83876 * 26 24 22 30 30 H 1.09004 * 109.47304 * 171.95603 * 1 2 3 31 31 H 1.09000 * 109.46910 * 291.94969 * 1 2 3 32 32 H 1.08991 * 109.47348 * 51.95027 * 1 2 3 33 33 H 1.09002 * 109.47073 * 240.00111 * 2 1 3 34 34 H 1.08998 * 109.47539 * 120.00379 * 2 1 3 35 35 H 0.96999 * 119.99443 * 19.97178 * 7 5 3 36 36 H 1.07999 * 120.03521 * 359.97438 * 11 10 8 37 37 H 1.08001 * 120.09438 * 180.02562 * 12 11 10 38 38 H 1.08003 * 120.14397 * 179.73672 * 13 12 11 39 39 H 1.07997 * 125.18820 * 180.02562 * 16 15 14 40 40 H 1.09001 * 111.00550 * 153.57712 * 19 5 3 41 41 H 1.08999 * 111.00929 * 277.42378 * 19 5 3 42 42 H 1.09001 * 110.36390 * 81.82781 * 20 19 5 43 43 H 1.08997 * 110.36651 * 204.15129 * 20 19 5 44 44 H 0.97000 * 119.99923 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6428 1.9783 -0.8622 5 6 3.5827 1.4537 -0.0401 6 1 3.9879 0.5167 0.3417 7 7 4.0640 1.7086 -1.4001 8 6 5.3225 1.3702 -1.7439 9 8 6.0586 0.8537 -0.9251 10 6 5.8063 1.6268 -3.1104 11 6 7.0926 1.2799 -3.4607 12 6 7.5519 1.5232 -4.7591 13 6 6.7257 2.1083 -5.6718 14 6 5.4116 2.4530 -5.3031 15 7 4.4078 3.0162 -5.9659 16 6 3.3584 3.1387 -5.1684 17 7 3.6501 2.6626 -3.9791 18 7 4.9757 2.2099 -4.0321 19 6 3.9461 2.6328 0.9008 20 6 2.8401 2.5220 1.9798 21 7 1.6306 2.1176 1.2403 22 6 0.3396 2.3352 1.6418 23 1 -0.4285 2.5300 0.9080 24 6 0.0182 2.3056 2.9918 25 7 -1.1103 2.8373 3.4114 26 14 1.1875 1.5113 4.2131 27 1 2.1909 2.5108 4.6596 28 1 0.4201 1.0219 5.3865 29 1 1.8808 0.3698 3.5639 30 1 -0.3634 -1.0176 -0.1438 31 1 -0.3633 0.3841 0.9532 32 1 -0.3633 0.6333 -0.8092 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.4769 2.1208 -2.0530 36 1 7.7456 0.8205 -2.7335 37 1 8.5598 1.2520 -5.0367 38 1 7.0763 2.3025 -6.6747 39 1 2.4073 3.5643 -5.4524 40 1 4.9344 2.4930 1.3386 41 1 3.8848 3.5856 0.3749 42 1 3.1046 1.7646 2.7177 43 1 2.6842 3.4862 2.4636 44 1 -1.3351 2.8163 4.3548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087644530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:03 Heat of formation + Delta-G solvation = 97.954484 kcal Electronic energy + Delta-G solvation = -28542.082496 eV Core-core repulsion = 24689.936668 eV Total energy + Delta-G solvation = -3852.145828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.83132 -41.29902 -39.79785 -38.48933 -35.90327 -34.84005 -34.15904 -33.85603 -32.06812 -31.39827 -30.88735 -28.76747 -26.71283 -25.51889 -24.56716 -23.95807 -23.74347 -22.37593 -21.82708 -21.06023 -19.33586 -18.94694 -18.61773 -17.80691 -17.53192 -17.44776 -17.08091 -16.72291 -16.25454 -16.00818 -15.44548 -15.34001 -15.17980 -14.96670 -14.61124 -14.11737 -13.97287 -13.88611 -13.68276 -13.62354 -13.24097 -13.10054 -12.94664 -12.78814 -12.65632 -12.41309 -12.30444 -12.16907 -12.05299 -11.80028 -11.60606 -11.59320 -11.39439 -11.17489 -10.72687 -10.67160 -10.24175 -9.44579 -8.87959 -8.18724 -5.55847 -0.88392 -0.14702 0.83803 1.25277 1.30307 1.37933 1.47393 1.78513 1.79508 2.35415 2.41146 2.80136 2.99204 3.06133 3.25960 3.53239 3.57724 3.67902 3.79609 3.91882 4.01598 4.05477 4.18049 4.32046 4.36790 4.39542 4.52855 4.59358 4.79214 4.79676 4.84794 4.90697 4.95736 5.00208 5.06732 5.07155 5.13207 5.20598 5.25468 5.27940 5.44307 5.52039 5.68802 5.83108 6.15058 6.29409 6.76186 6.77325 6.88928 7.50946 8.13090 9.00940 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.020218 B = 0.003397 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.580821 B = 8239.547985 C = 8903.364066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.156 3.844 4 H 0.044 0.956 5 C 0.143 3.857 6 H 0.095 0.905 7 N -0.698 5.698 8 C 0.558 3.442 9 O -0.549 6.549 10 C 0.049 3.951 11 C -0.053 4.053 12 C -0.049 4.049 13 C -0.074 4.074 14 C 0.259 3.741 15 N -0.561 5.561 16 C 0.245 3.755 17 N -0.384 5.384 18 N -0.283 5.283 19 C -0.127 4.127 20 C 0.112 3.888 21 N -0.612 5.612 22 C -0.210 4.210 23 H 0.058 0.942 24 C -0.020 4.020 25 N -0.952 5.952 26 Si 0.934 3.066 27 H -0.275 1.275 28 H -0.308 1.308 29 H -0.266 1.266 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.417 0.583 36 H 0.191 0.809 37 H 0.214 0.786 38 H 0.195 0.805 39 H 0.257 0.743 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.022 0.978 43 H 0.047 0.953 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.953 -3.525 -20.468 29.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C 0.050 3.950 4 H 0.062 0.938 5 C 0.038 3.962 6 H 0.113 0.887 7 N -0.353 5.353 8 C 0.344 3.656 9 O -0.428 6.428 10 C -0.062 4.062 11 C -0.077 4.077 12 C -0.074 4.074 13 C -0.095 4.095 14 C 0.006 3.994 15 N -0.292 5.292 16 C -0.054 4.054 17 N -0.217 5.217 18 N -0.060 5.060 19 C -0.166 4.166 20 C -0.013 4.013 21 N -0.338 5.338 22 C -0.339 4.339 23 H 0.076 0.924 24 C -0.215 4.215 25 N -0.598 5.598 26 Si 0.763 3.237 27 H -0.202 1.202 28 H -0.236 1.236 29 H -0.191 1.191 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.260 0.740 36 H 0.208 0.792 37 H 0.231 0.769 38 H 0.212 0.788 39 H 0.273 0.727 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.040 0.960 43 H 0.066 0.934 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.569 -3.661 -19.515 28.589 hybrid contribution -0.709 0.038 0.981 1.211 sum 19.860 -3.623 -18.533 27.405 Atomic orbital electron populations 1.21778 0.95651 1.00180 1.02565 1.21824 0.96923 0.96563 1.00516 1.21278 0.90921 0.92731 0.90044 0.93822 1.21918 0.93760 0.98989 0.81582 0.88749 1.46343 1.13879 1.61079 1.14005 1.17865 0.82337 0.78856 0.86531 1.90825 1.56060 1.44869 1.51007 1.20566 0.92373 1.04313 0.88929 1.22024 0.90635 0.95406 0.99599 1.21844 1.02647 0.93366 0.89569 1.21146 0.86397 0.97924 1.04034 1.22597 0.97750 0.97324 0.81710 1.70856 0.99993 1.25961 1.32356 1.26788 0.99794 0.93626 0.85213 1.77952 0.91037 1.27922 1.24839 1.47872 1.09945 1.37677 1.10540 1.23035 0.98535 0.98442 0.96601 1.21968 0.86948 0.97718 0.94640 1.44750 1.01194 1.65557 1.22341 1.18253 0.84062 1.40242 0.91376 0.92443 1.25851 0.97097 0.99724 0.98866 1.69896 1.26497 1.47837 1.15546 0.86010 0.78721 0.80276 0.78675 1.20162 1.23609 1.19096 0.92842 0.92443 0.93897 0.91444 0.93465 0.74000 0.79190 0.76950 0.78765 0.72730 0.89363 0.90712 0.96011 0.93420 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 9.02 71.98 0.65 -5.08 16 2 C -0.12 -4.47 5.49 30.59 0.17 -4.30 16 3 C 0.16 6.17 3.02 45.34 0.14 6.31 16 4 H 0.04 1.77 7.69 -2.39 -0.02 1.75 16 5 C 0.14 4.94 2.76 46.18 0.13 5.07 16 6 H 0.09 3.35 7.41 -2.39 -0.02 3.33 16 7 N -0.70 -21.44 5.20 -440.38 -2.29 -23.73 16 8 C 0.56 15.81 7.77 86.60 0.67 16.49 16 9 O -0.55 -17.32 16.01 -4.10 -0.07 -17.38 16 10 C 0.05 1.06 6.80 40.57 0.28 1.34 16 11 C -0.05 -0.65 9.58 22.55 0.22 -0.43 16 12 C -0.05 -0.23 10.04 22.21 0.22 -0.01 16 13 C -0.07 -0.68 10.09 22.44 0.23 -0.45 16 14 C 0.26 5.06 7.88 134.16 1.06 6.12 16 15 N -0.56 -12.44 11.24 -198.18 -2.23 -14.67 16 16 C 0.25 5.27 12.98 180.83 2.35 7.62 16 17 N -0.38 -9.95 9.98 -61.38 -0.61 -10.56 16 18 N -0.28 -6.62 3.92 -181.81 -0.71 -7.33 16 19 C -0.13 -4.45 6.77 31.99 0.22 -4.23 16 20 C 0.11 4.82 4.97 86.86 0.43 5.25 16 21 N -0.61 -28.88 2.71 -668.26 -1.81 -30.69 16 22 C -0.21 -11.68 7.35 84.03 0.62 -11.06 16 23 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 24 C -0.02 -1.14 5.46 84.86 0.46 -0.67 16 25 N -0.95 -59.24 13.97 21.65 0.30 -58.94 16 26 Si 0.93 46.96 24.63 68.60 1.69 48.65 16 27 H -0.28 -13.28 7.10 99.48 0.71 -12.58 16 28 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 29 H -0.27 -12.98 6.85 99.48 0.68 -12.30 16 30 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.06 2.75 5.60 -2.39 -0.01 2.73 16 32 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.42 12.84 5.25 -92.71 -0.49 12.35 16 36 H 0.19 1.71 7.59 -2.91 -0.02 1.68 16 37 H 0.21 -1.15 8.06 -2.91 -0.02 -1.18 16 38 H 0.20 0.49 8.06 -2.91 -0.02 0.47 16 39 H 0.26 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.02 0.97 5.33 -2.39 -0.01 0.96 16 43 H 0.05 2.15 7.98 -2.39 -0.02 2.13 16 44 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -76.45 354.67 2.62 -73.83 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.52 Total: 18.87 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 7.83 Total: 21.95 kcal Atomic # 7 Polarization: -138.56 SS G_CDS: -7.35 Total: -145.91 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.07 Total: -17.38 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.69 Total: 48.65 kcal Total: -76.45 2.62 -73.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087644530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.783 kcal (2) G-P(sol) polarization free energy of solvation -76.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds