Wall clock time and date at job start Tue Mar 31 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46643 * 2 1 4 4 H 1.08994 * 109.99807 * 304.61609 * 3 2 1 5 5 C 1.54340 * 109.98751 * 183.58340 * 3 2 1 6 6 H 1.09002 * 110.51407 * 336.97573 * 5 3 2 7 7 N 1.46498 * 110.85067 * 100.19520 * 5 3 2 8 8 C 1.34774 * 120.00395 * 200.14331 * 7 5 3 9 9 O 1.21710 * 119.99701 * 0.02562 * 8 7 5 10 10 C 1.46575 * 120.00387 * 180.02562 * 8 7 5 11 11 C 1.40650 * 126.53833 * 0.02562 * 10 8 7 12 12 N 1.30697 * 108.72788 * 179.97438 * 11 10 8 13 13 N 1.39910 * 109.51967 * 0.02562 * 12 11 10 14 14 C 1.36308 * 132.15830 * 180.02562 * 13 12 11 15 15 C 1.35752 * 119.15635 * 179.97438 * 14 13 12 16 16 C 1.39967 * 119.35523 * 359.97438 * 15 14 13 17 17 N 1.31502 * 120.10515 * 0.03108 * 16 15 14 18 18 C 1.33388 * 120.85452 * 359.66760 * 17 16 15 19 19 C 1.55155 * 103.01949 * 218.66416 * 5 3 2 20 20 C 1.54919 * 101.58150 * 35.30862 * 19 5 3 21 21 N 1.47019 * 109.88134 * 65.71875 * 3 2 1 22 22 C 1.36934 * 125.65134 * 298.38829 * 21 3 2 23 23 H 1.08009 * 119.99580 * 333.71688 * 22 21 3 24 24 C 1.38804 * 120.00285 * 153.71028 * 22 21 3 25 25 N 1.31621 * 120.00316 * 334.84121 * 24 22 21 26 26 Si 1.86803 * 119.99924 * 154.83885 * 24 22 21 27 27 H 1.48504 * 109.46817 * 90.00557 * 26 24 22 28 28 H 1.48499 * 109.47385 * 330.00167 * 26 24 22 29 29 H 1.48505 * 109.47293 * 210.00051 * 26 24 22 30 30 H 1.09003 * 109.47043 * 171.79480 * 1 2 3 31 31 H 1.09000 * 109.47383 * 291.79134 * 1 2 3 32 32 H 1.09006 * 109.47178 * 51.79643 * 1 2 3 33 33 H 1.09000 * 109.47428 * 239.99996 * 2 1 3 34 34 H 1.08996 * 109.47296 * 119.99555 * 2 1 3 35 35 H 0.97006 * 119.99848 * 20.15202 * 7 5 3 36 36 H 1.07998 * 125.63413 * 359.95213 * 11 10 8 37 37 H 1.08004 * 120.42630 * 359.97438 * 14 13 12 38 38 H 1.07997 * 120.32816 * 180.02562 * 15 14 13 39 39 H 1.08000 * 119.94902 * 179.97438 * 16 15 14 40 40 H 1.08999 * 111.00589 * 277.23090 * 19 5 3 41 41 H 1.09000 * 111.00554 * 153.37944 * 19 5 3 42 42 H 1.08997 * 110.36502 * 204.14890 * 20 19 5 43 43 H 1.09001 * 110.36410 * 81.82771 * 20 19 5 44 44 H 0.96996 * 119.99635 * 353.73227 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6155 1.9879 -0.8429 5 6 3.5806 1.4576 -0.0907 6 1 3.9933 0.5136 0.2653 7 7 4.0196 1.7330 -1.4609 8 6 5.2661 1.3986 -1.8492 9 8 6.0269 0.8674 -1.0616 10 6 5.7056 1.6746 -3.2200 11 6 4.9456 2.2794 -4.2373 12 7 5.6765 2.3561 -5.3180 13 7 6.9402 1.8105 -5.0674 14 6 8.0427 1.6567 -5.8540 15 6 9.1542 1.0800 -5.3296 16 6 9.1434 0.6575 -3.9953 17 7 8.0646 0.8191 -3.2609 18 6 6.9711 1.3904 -3.7680 19 6 3.9751 2.6213 0.8566 20 6 2.9032 2.4949 1.9678 21 7 1.6705 2.1035 1.2603 22 6 0.3931 2.3152 1.7059 23 1 -0.4195 2.3937 0.9986 24 6 0.1425 2.4288 3.0664 25 7 0.9575 1.8685 3.9348 26 14 -1.3516 3.3770 3.6649 27 1 -2.5094 2.4543 3.7813 28 1 -1.6737 4.4559 2.6967 29 1 -1.0594 3.9745 4.9927 30 1 -0.3633 -1.0172 -0.1467 31 1 -0.3634 0.3815 0.9542 32 1 -0.3634 0.6356 -0.8076 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.4132 2.1561 -2.0887 36 1 3.9263 2.6233 -4.1413 37 1 8.0323 1.9894 -6.8815 38 1 10.0384 0.9492 -5.9357 39 1 10.0221 0.1971 -3.5684 40 1 3.8990 3.5822 0.3478 41 1 4.9764 2.4735 1.2611 42 1 2.7641 3.4516 2.4713 43 1 3.1894 1.7258 2.6852 44 1 1.6806 1.3010 3.6250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087681867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:30 Heat of formation + Delta-G solvation = 109.009357 kcal Electronic energy + Delta-G solvation = -27867.806666 eV Core-core repulsion = 24016.140214 eV Total energy + Delta-G solvation = -3851.666452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.78405 -39.51220 -38.41819 -37.57486 -34.39990 -34.05813 -32.51323 -31.96177 -31.48120 -29.85584 -28.41779 -26.80990 -25.31510 -24.69917 -23.73676 -22.77818 -21.73343 -20.64404 -20.10706 -19.51738 -18.61382 -17.73293 -17.30047 -17.10807 -16.53542 -16.15703 -15.85876 -14.71807 -14.49645 -14.43570 -14.11087 -13.86078 -13.68680 -13.47871 -13.36351 -13.05815 -12.98134 -12.81269 -12.34553 -12.04221 -11.86540 -11.62889 -11.52366 -11.00853 -10.82269 -10.69399 -10.41221 -10.19092 -10.13820 -10.05783 -10.04922 -9.98295 -9.77773 -9.57117 -9.37650 -8.64418 -8.34451 -8.26935 -6.84326 -6.00253 -3.16521 0.00633 0.38028 1.53360 1.87503 2.85285 3.33720 3.44460 3.51800 3.56446 3.63962 3.71115 3.77795 3.89815 4.37770 4.55241 4.61702 4.75335 4.82558 4.98074 5.15296 5.36429 5.42696 5.46239 5.50842 5.51557 5.79314 5.83712 6.00571 6.01481 6.04637 6.17679 6.24346 6.39503 6.51814 6.60697 6.64531 6.75210 6.89163 6.91449 7.02369 7.14728 7.19468 7.25215 7.38534 7.85152 7.92989 8.54837 8.59426 9.07766 9.84861 10.44374 11.27686 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027082 B = 0.002599 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.655823 B =10769.507702 C =11037.254970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.036 0.964 5 C 0.140 3.860 6 H 0.092 0.908 7 N -0.715 5.715 8 C 0.593 3.407 9 O -0.530 6.530 10 C -0.280 4.280 11 C 0.129 3.871 12 N -0.312 5.312 13 N -0.309 5.309 14 C 0.164 3.836 15 C -0.223 4.223 16 C 0.182 3.818 17 N -0.438 5.438 18 C 0.315 3.685 19 C -0.144 4.144 20 C 0.144 3.856 21 N -0.590 5.590 22 C -0.324 4.324 23 H 0.062 0.938 24 C -0.025 4.025 25 N -0.914 5.914 26 Si 1.065 2.935 27 H -0.295 1.295 28 H -0.293 1.293 29 H -0.287 1.287 30 H 0.028 0.972 31 H 0.091 0.909 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.055 0.945 35 H 0.394 0.606 36 H 0.206 0.794 37 H 0.183 0.817 38 H 0.171 0.829 39 H 0.184 0.816 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.029 0.971 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.248 -0.619 -21.816 26.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.050 3.950 4 H 0.054 0.946 5 C 0.036 3.964 6 H 0.110 0.890 7 N -0.366 5.366 8 C 0.380 3.620 9 O -0.407 6.407 10 C -0.297 4.297 11 C -0.052 4.052 12 N -0.133 5.133 13 N -0.078 5.078 14 C 0.028 3.972 15 C -0.247 4.247 16 C -0.001 4.001 17 N -0.149 5.149 18 C 0.084 3.916 19 C -0.183 4.183 20 C 0.018 3.982 21 N -0.316 5.316 22 C -0.452 4.452 23 H 0.080 0.920 24 C -0.228 4.228 25 N -0.554 5.554 26 Si 0.895 3.105 27 H -0.222 1.222 28 H -0.219 1.219 29 H -0.213 1.213 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.228 0.772 36 H 0.223 0.777 37 H 0.200 0.800 38 H 0.189 0.811 39 H 0.201 0.799 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.585 -0.214 -20.144 24.871 hybrid contribution 0.546 -0.428 -1.892 2.015 sum 15.131 -0.642 -22.036 26.738 Atomic orbital electron populations 1.21892 0.95729 0.98787 1.04162 1.21880 0.96963 0.97678 0.99697 1.21191 0.89804 0.92231 0.91825 0.94603 1.22031 0.95285 0.99016 0.80107 0.88999 1.45766 1.13786 1.63062 1.13951 1.16719 0.81833 0.78441 0.85047 1.90837 1.53304 1.42869 1.53682 1.19564 0.92756 1.19674 0.97685 1.24203 0.99669 0.92666 0.88692 1.77602 0.87944 1.24572 1.23221 1.47061 1.11233 1.39144 1.10317 1.22147 0.82811 0.94511 0.97699 1.21955 0.99427 1.04873 0.98459 1.23669 0.95741 0.90669 0.89998 1.68371 0.97987 1.13494 1.34999 1.20416 0.94533 0.94530 0.82137 1.23189 0.99335 0.97830 0.97988 1.21547 0.85336 0.98513 0.92813 1.44513 1.01889 1.65389 1.19807 1.19595 0.83794 1.49172 0.92621 0.91983 1.25813 1.03967 1.00629 0.92364 1.70722 1.19070 1.29211 1.36410 0.83540 0.74960 0.76237 0.75755 1.22231 1.21930 1.21264 0.95294 0.88989 0.94321 0.94270 0.92588 0.77217 0.77739 0.79985 0.81138 0.79865 0.91696 0.91567 0.93230 0.95289 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.98 37.16 0.33 -2.62 16 2 C -0.12 -2.43 5.47 -26.73 -0.15 -2.57 16 3 C 0.16 3.17 3.00 -66.94 -0.20 2.97 16 4 H 0.04 0.71 7.69 -51.93 -0.40 0.31 16 5 C 0.14 2.61 2.76 -66.09 -0.18 2.43 16 6 H 0.09 1.88 7.40 -51.93 -0.38 1.49 16 7 N -0.71 -11.09 5.20 -53.36 -0.28 -11.37 16 8 C 0.59 10.04 7.78 -12.90 -0.10 9.94 16 9 O -0.53 -11.04 16.47 5.18 0.09 -10.96 16 10 C -0.28 -4.00 6.17 -104.66 -0.65 -4.65 16 11 C 0.13 1.43 11.44 -17.12 -0.20 1.23 16 12 N -0.31 -3.58 12.58 30.77 0.39 -3.19 16 13 N -0.31 -3.35 3.86 -11.97 -0.05 -3.39 16 14 C 0.16 1.00 11.29 -16.45 -0.19 0.82 16 15 C -0.22 -0.93 10.05 -39.82 -0.40 -1.33 16 16 C 0.18 1.29 11.28 -17.05 -0.19 1.10 16 17 N -0.44 -5.67 10.26 -12.00 -0.12 -5.79 16 18 C 0.32 4.31 7.74 -155.83 -1.21 3.10 16 19 C -0.14 -2.82 6.77 -24.58 -0.17 -2.98 16 20 C 0.14 3.37 5.56 -2.52 -0.01 3.35 16 21 N -0.59 -14.33 2.92 -162.56 -0.47 -14.80 16 22 C -0.32 -8.63 7.22 -15.06 -0.11 -8.74 16 23 H 0.06 1.65 7.24 -52.48 -0.38 1.27 16 24 C -0.02 -0.69 5.17 -17.43 -0.09 -0.78 16 25 N -0.91 -27.26 13.05 55.49 0.72 -26.53 16 26 Si 1.07 25.07 29.99 -169.99 -5.10 19.97 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 29 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 2.15 5.52 -51.93 -0.29 1.86 16 32 H 0.04 0.72 8.13 -51.93 -0.42 0.29 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.39 4.93 7.24 -40.82 -0.30 4.63 16 36 H 0.21 1.49 7.46 -52.49 -0.39 1.10 16 37 H 0.18 0.44 8.06 -52.48 -0.42 0.02 16 38 H 0.17 -0.03 8.06 -52.49 -0.42 -0.45 16 39 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.03 0.74 6.73 -51.93 -0.35 0.39 16 44 H 0.27 8.15 6.20 -40.82 -0.25 7.90 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -37.11 362.96 -8.62 -45.73 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.76 Total: 3.59 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -3.50 Total: 1.27 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: 0.19 Total: -65.08 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.10 Total: 19.97 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.11 -8.62 -45.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087681867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.740 kcal (2) G-P(sol) polarization free energy of solvation -37.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds