Wall clock time and date at job start Tue Mar 31 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46643 * 2 1 4 4 H 1.08994 * 109.99807 * 304.61609 * 3 2 1 5 5 C 1.54340 * 109.98751 * 183.58340 * 3 2 1 6 6 H 1.09002 * 110.51407 * 336.97573 * 5 3 2 7 7 N 1.46498 * 110.85067 * 100.19520 * 5 3 2 8 8 C 1.34774 * 120.00395 * 200.14331 * 7 5 3 9 9 O 1.21564 * 119.99782 * 0.02562 * 8 7 5 10 10 C 1.47799 * 120.00367 * 180.02562 * 8 7 5 11 11 N 1.32294 * 120.58671 * 359.71655 * 10 8 7 12 12 C 1.32697 * 121.18377 * 179.76480 * 11 10 8 13 13 C 1.35473 * 122.11606 * 0.53084 * 12 11 10 14 14 N 1.36222 * 120.52111 * 359.74194 * 13 12 11 15 15 C 1.36171 * 133.92681 * 180.02562 * 14 13 12 16 16 C 1.35334 * 107.14226 * 179.97438 * 15 14 13 17 17 N 1.33563 * 108.61360 * 0.02562 * 16 15 14 18 18 C 1.31852 * 109.14727 * 359.97438 * 17 16 15 19 19 C 1.55155 * 103.01949 * 218.66416 * 5 3 2 20 20 C 1.54919 * 101.58150 * 35.30862 * 19 5 3 21 21 N 1.47019 * 109.88134 * 65.71875 * 3 2 1 22 22 C 1.36934 * 125.65134 * 298.38829 * 21 3 2 23 23 H 1.08009 * 119.99580 * 333.71688 * 22 21 3 24 24 C 1.38804 * 120.00285 * 153.71028 * 22 21 3 25 25 N 1.31621 * 120.00316 * 334.84121 * 24 22 21 26 26 Si 1.86803 * 119.99924 * 154.83885 * 24 22 21 27 27 H 1.48504 * 109.46817 * 90.00557 * 26 24 22 28 28 H 1.48499 * 109.47385 * 330.00167 * 26 24 22 29 29 H 1.48505 * 109.47293 * 210.00051 * 26 24 22 30 30 H 1.09003 * 109.47043 * 171.79480 * 1 2 3 31 31 H 1.09000 * 109.47383 * 291.79134 * 1 2 3 32 32 H 1.09006 * 109.47178 * 51.79643 * 1 2 3 33 33 H 1.09000 * 109.47428 * 239.99996 * 2 1 3 34 34 H 1.08996 * 109.47296 * 119.99555 * 2 1 3 35 35 H 0.97006 * 119.99848 * 20.15202 * 7 5 3 36 36 H 1.08001 * 118.94356 * 180.27363 * 12 11 10 37 37 H 1.07996 * 119.74137 * 179.71542 * 13 12 11 38 38 H 1.07998 * 126.42706 * 0.02562 * 15 14 13 39 39 H 1.08004 * 125.69201 * 180.02562 * 16 15 14 40 40 H 1.08999 * 111.00589 * 277.23090 * 19 5 3 41 41 H 1.09000 * 111.00554 * 153.37944 * 19 5 3 42 42 H 1.08997 * 110.36502 * 204.14890 * 20 19 5 43 43 H 1.09001 * 110.36410 * 81.82771 * 20 19 5 44 44 H 0.96996 * 119.99635 * 353.73227 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6155 1.9879 -0.8429 5 6 3.5806 1.4576 -0.0907 6 1 3.9933 0.5136 0.2653 7 7 4.0196 1.7330 -1.4609 8 6 5.2661 1.3986 -1.8492 9 8 6.0260 0.8680 -1.0626 10 6 5.7093 1.6769 -3.2315 11 7 4.8901 2.2488 -4.0987 12 6 5.2771 2.5083 -5.3412 13 6 6.5166 2.1956 -5.7897 14 7 7.4212 1.5998 -4.9637 15 6 8.7064 1.1772 -5.1183 16 6 9.0999 0.6551 -3.9333 17 7 8.0870 0.7507 -3.0680 18 6 7.0589 1.3191 -3.6667 19 6 3.9751 2.6213 0.8566 20 6 2.9032 2.4949 1.9678 21 7 1.6705 2.1035 1.2603 22 6 0.3931 2.3152 1.7059 23 1 -0.4195 2.3937 0.9986 24 6 0.1425 2.4288 3.0664 25 7 0.9575 1.8685 3.9348 26 14 -1.3516 3.3770 3.6649 27 1 -2.5094 2.4543 3.7813 28 1 -1.6737 4.4559 2.6967 29 1 -1.0594 3.9745 4.9927 30 1 -0.3633 -1.0172 -0.1467 31 1 -0.3634 0.3815 0.9542 32 1 -0.3634 0.6356 -0.8076 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.4132 2.1561 -2.0887 36 1 4.5801 2.9802 -6.0179 37 1 6.7895 2.4201 -6.8102 38 1 9.3006 1.2464 -6.0175 39 1 10.0709 0.2319 -3.7225 40 1 3.8990 3.5822 0.3478 41 1 4.9764 2.4735 1.2611 42 1 2.7641 3.4516 2.4713 43 1 3.1894 1.7258 2.6852 44 1 1.6806 1.3010 3.6250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087730240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:53 Heat of formation + Delta-G solvation = 100.145461 kcal Electronic energy + Delta-G solvation = -28000.023941 eV Core-core repulsion = 24147.973121 eV Total energy + Delta-G solvation = -3852.050820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.35292 -39.87422 -38.69977 -37.76153 -34.65052 -34.17936 -32.52846 -31.92187 -30.92035 -29.90725 -28.58059 -27.03364 -25.72427 -24.24349 -23.64461 -22.52941 -21.80099 -21.08814 -20.20207 -19.65861 -18.93832 -18.25275 -17.29184 -16.59496 -16.46578 -16.10238 -15.91579 -15.04619 -14.79270 -14.48885 -14.28119 -14.15119 -13.91373 -13.59991 -13.38281 -13.24059 -12.99008 -12.84148 -12.35828 -12.11643 -11.81668 -11.58608 -11.03358 -10.87407 -10.75041 -10.68030 -10.49278 -10.42709 -10.20429 -10.07299 -10.02609 -9.85256 -9.77692 -9.38740 -9.37694 -8.75824 -8.56935 -8.35385 -6.85770 -6.01158 -3.17556 -0.30450 0.80084 1.89582 2.39137 2.60938 2.90983 3.45361 3.51641 3.56101 3.57694 3.70154 3.71384 3.89086 4.20690 4.59546 4.63586 4.78121 4.89544 4.94624 5.15782 5.34152 5.37854 5.40107 5.48617 5.65581 5.75789 5.98840 6.02739 6.11167 6.11323 6.21805 6.29505 6.33773 6.43958 6.55663 6.63082 6.71153 6.82380 6.99878 7.01006 7.11529 7.16240 7.37972 7.45260 7.66801 7.91695 8.26738 8.53933 9.06409 9.83736 10.42639 11.26812 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.024988 B = 0.002719 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.277978 B =10296.681172 C =10624.968160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.039 0.961 5 C 0.135 3.865 6 H 0.096 0.904 7 N -0.692 5.692 8 C 0.568 3.432 9 O -0.496 6.496 10 C 0.188 3.812 11 N -0.427 5.427 12 C 0.032 3.968 13 C 0.031 3.969 14 N -0.357 5.357 15 C -0.083 4.083 16 C 0.033 3.967 17 N -0.432 5.432 18 C 0.190 3.810 19 C -0.145 4.145 20 C 0.144 3.856 21 N -0.590 5.590 22 C -0.324 4.324 23 H 0.063 0.937 24 C -0.024 4.024 25 N -0.914 5.914 26 Si 1.065 2.935 27 H -0.295 1.295 28 H -0.293 1.293 29 H -0.287 1.287 30 H 0.028 0.972 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.056 0.944 35 H 0.408 0.592 36 H 0.186 0.814 37 H 0.176 0.824 38 H 0.191 0.809 39 H 0.189 0.811 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.031 0.969 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.558 0.720 -22.840 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.050 3.950 4 H 0.056 0.944 5 C 0.031 3.969 6 H 0.114 0.886 7 N -0.343 5.343 8 C 0.350 3.650 9 O -0.368 6.368 10 C 0.022 3.978 11 N -0.143 5.143 12 C -0.109 4.109 13 C -0.095 4.095 14 N -0.032 5.032 15 C -0.216 4.216 16 C -0.120 4.120 17 N -0.151 5.151 18 C -0.057 4.057 19 C -0.184 4.184 20 C 0.018 3.982 21 N -0.316 5.316 22 C -0.452 4.452 23 H 0.081 0.919 24 C -0.227 4.227 25 N -0.554 5.554 26 Si 0.895 3.105 27 H -0.222 1.222 28 H -0.219 1.219 29 H -0.213 1.213 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.244 0.756 36 H 0.203 0.797 37 H 0.193 0.807 38 H 0.208 0.792 39 H 0.206 0.794 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.391 0.939 -20.006 23.041 hybrid contribution 1.433 -0.346 -3.198 3.521 sum 12.823 0.593 -23.204 26.519 Atomic orbital electron populations 1.21889 0.95644 0.98830 1.04200 1.21887 0.97084 0.97568 0.99724 1.21193 0.89415 0.92402 0.92001 0.94358 1.22192 0.95810 0.99351 0.79585 0.88633 1.45857 1.13250 1.60858 1.14354 1.17207 0.83006 0.80369 0.84463 1.90908 1.53030 1.41005 1.51876 1.22355 0.85366 0.94749 0.95346 1.68130 1.33605 1.09701 1.02821 1.22133 0.93938 1.01663 0.93138 1.22762 0.90355 0.98604 0.97755 1.42921 1.11277 1.37425 1.11561 1.22807 0.84421 1.10805 1.03564 1.22947 0.99399 1.00918 0.88728 1.70706 0.98181 1.16312 1.29935 1.22541 0.97008 1.04436 0.81715 1.23210 0.99550 0.97704 0.97939 1.21551 0.85243 0.98648 0.92745 1.44510 1.01920 1.65374 1.19772 1.19598 0.83760 1.49210 0.92638 0.91942 1.25816 1.03961 1.00593 0.92342 1.70726 1.19054 1.29176 1.36406 0.83538 0.74951 0.76239 0.75756 1.22222 1.21916 1.21259 0.95258 0.88962 0.94276 0.94254 0.92507 0.75575 0.79723 0.80683 0.79218 0.79375 0.91520 0.91348 0.93097 0.95167 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.98 37.16 0.33 -2.61 16 2 C -0.12 -2.42 5.47 -26.73 -0.15 -2.57 16 3 C 0.16 3.18 3.00 -66.94 -0.20 2.98 16 4 H 0.04 0.77 7.69 -51.93 -0.40 0.37 16 5 C 0.13 2.49 2.76 -66.09 -0.18 2.30 16 6 H 0.10 1.89 7.40 -51.93 -0.38 1.50 16 7 N -0.69 -10.97 5.20 -52.98 -0.28 -11.24 16 8 C 0.57 9.50 7.81 -12.35 -0.10 9.40 16 9 O -0.50 -9.94 15.96 5.31 0.08 -9.86 16 10 C 0.19 2.66 6.97 -80.54 -0.56 2.10 16 11 N -0.43 -4.88 9.67 -8.68 -0.08 -4.97 16 12 C 0.03 0.24 11.01 -18.16 -0.20 0.04 16 13 C 0.03 0.20 11.00 -16.59 -0.18 0.02 16 14 N -0.36 -3.51 2.95 -61.13 -0.18 -3.69 16 15 C -0.08 -0.64 11.80 -16.66 -0.20 -0.84 16 16 C 0.03 0.33 11.83 -17.83 -0.21 0.12 16 17 N -0.43 -6.48 10.74 -11.29 -0.12 -6.60 16 18 C 0.19 2.66 7.66 -153.99 -1.18 1.48 16 19 C -0.14 -2.78 6.77 -24.58 -0.17 -2.95 16 20 C 0.14 3.33 5.56 -2.52 -0.01 3.32 16 21 N -0.59 -14.24 2.92 -162.56 -0.47 -14.72 16 22 C -0.32 -8.60 7.22 -15.06 -0.11 -8.71 16 23 H 0.06 1.66 7.24 -52.48 -0.38 1.28 16 24 C -0.02 -0.67 5.17 -17.43 -0.09 -0.76 16 25 N -0.91 -27.05 13.05 55.49 0.72 -26.33 16 26 Si 1.07 24.95 29.99 -169.99 -5.10 19.86 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 2.14 5.52 -51.93 -0.29 1.85 16 32 H 0.04 0.73 8.13 -51.93 -0.42 0.30 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.41 5.77 7.69 -40.82 -0.31 5.46 16 36 H 0.19 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.18 0.34 8.06 -52.49 -0.42 -0.08 16 38 H 0.19 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.19 1.21 8.06 -52.48 -0.42 0.79 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.03 0.76 6.73 -51.93 -0.35 0.41 16 44 H 0.27 8.08 6.20 -40.82 -0.25 7.83 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -34.90 362.50 -8.98 -43.87 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.81 Total: 4.87 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -3.20 Total: 3.33 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -0.41 Total: -67.54 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.10 Total: 19.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.90 -8.98 -43.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087730240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.018 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds