Wall clock time and date at job start Tue Mar 31 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09000 * 109.99916 * 305.73102 * 3 2 1 5 5 C 1.54340 * 109.99273 * 184.69906 * 3 2 1 6 6 H 1.09000 * 110.66494 * 337.04632 * 5 3 2 7 7 N 1.46499 * 110.85229 * 100.19447 * 5 3 2 8 8 C 1.34775 * 120.00280 * 200.14659 * 7 5 3 9 9 O 1.21761 * 119.99743 * 0.02562 * 8 7 5 10 10 C 1.46192 * 120.00146 * 180.02562 * 8 7 5 11 11 C 1.38718 * 126.75955 * 180.02562 * 10 8 7 12 12 N 1.32291 * 108.17533 * 180.02562 * 11 10 8 13 13 C 1.33131 * 109.71044 * 359.97438 * 12 11 10 14 14 C 1.40631 * 132.28186 * 180.02562 * 13 12 11 15 15 C 1.36312 * 119.21665 * 179.97438 * 14 13 12 16 16 C 1.39874 * 120.12433 * 359.97438 * 15 14 13 17 17 N 1.30800 * 120.77894 * 0.04271 * 16 15 14 18 18 N 1.36649 * 108.63119 * 359.73598 * 13 12 11 19 19 C 1.55154 * 103.01909 * 218.66645 * 5 3 2 20 20 C 1.54911 * 101.58329 * 35.30275 * 19 5 3 21 21 N 1.47013 * 109.88458 * 66.82841 * 3 2 1 22 22 C 1.36939 * 125.64991 * 298.39848 * 21 3 2 23 23 H 1.07997 * 119.99481 * 325.75931 * 22 21 3 24 24 C 1.38811 * 120.00056 * 145.75910 * 22 21 3 25 25 N 1.31621 * 120.00421 * 339.04666 * 24 22 21 26 26 Si 1.86799 * 119.99670 * 159.04544 * 24 22 21 27 27 H 1.48509 * 109.47062 * 269.99861 * 26 24 22 28 28 H 1.48498 * 109.47474 * 30.00095 * 26 24 22 29 29 H 1.48500 * 109.47061 * 150.00517 * 26 24 22 30 30 H 1.08992 * 109.47208 * 291.18083 * 1 2 3 31 31 H 1.09008 * 109.47223 * 51.18114 * 1 2 3 32 32 H 1.09004 * 109.47139 * 171.17725 * 1 2 3 33 33 H 1.09008 * 109.46903 * 240.00295 * 2 1 3 34 34 H 1.08999 * 109.47326 * 120.00318 * 2 1 3 35 35 H 0.96999 * 119.99485 * 20.15137 * 7 5 3 36 36 H 1.08003 * 125.91563 * 359.97438 * 11 10 8 37 37 H 1.07997 * 120.38885 * 359.97438 * 14 13 12 38 38 H 1.08005 * 119.93438 * 180.02562 * 15 14 13 39 39 H 1.07999 * 119.60828 * 180.02562 * 16 15 14 40 40 H 1.08994 * 111.00114 * 277.22922 * 19 5 3 41 41 H 1.09000 * 111.03428 * 153.39530 * 19 5 3 42 42 H 1.08995 * 110.36400 * 204.14906 * 20 19 5 43 43 H 1.09007 * 110.45948 * 81.87288 * 20 19 5 44 44 H 0.97000 * 119.99107 * 353.68788 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9933 -0.8315 5 6 3.5787 1.4582 -0.1188 6 1 4.0005 0.5125 0.2217 7 7 3.9926 1.7425 -1.4951 8 6 5.2318 1.4106 -1.9083 9 8 6.0071 0.8741 -1.1379 10 6 5.6449 1.6949 -3.2816 11 6 6.8779 1.4151 -3.8523 12 7 6.8538 1.8268 -5.1093 13 6 5.6653 2.3600 -5.3843 14 6 5.1332 2.9332 -6.5531 15 6 3.8551 3.4071 -6.5393 16 6 3.0870 3.3210 -5.3735 17 7 3.5797 2.7886 -4.2851 18 7 4.8847 2.2874 -4.2651 19 6 3.9906 2.6157 0.8286 20 6 2.9392 2.4821 1.9584 21 7 1.6938 2.0952 1.2710 22 6 0.4247 2.3040 1.7413 23 1 -0.3789 2.5148 1.0513 24 6 0.1713 2.2446 3.1048 25 7 1.0006 1.6038 3.9011 26 14 -1.3468 3.0741 3.8095 27 1 -1.0178 4.4731 4.1836 28 1 -2.4280 3.0751 2.7916 29 1 -1.8013 2.3336 5.0138 30 1 -0.3633 0.3713 0.9582 31 1 -0.3634 0.6442 -0.8007 32 1 -0.3634 -1.0155 -0.1576 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.3747 2.1696 -2.1088 36 1 7.7134 0.9437 -3.3561 37 1 5.7300 2.9971 -7.4509 38 1 3.4346 3.8492 -7.4305 39 1 2.0752 3.6987 -5.3721 40 1 3.9052 3.5799 0.3275 41 1 4.9993 2.4659 1.2138 42 1 2.8095 3.4355 2.4705 43 1 3.2373 1.7092 2.6668 44 1 1.7377 1.0965 3.5266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087752903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:13 Heat of formation + Delta-G solvation = 106.597230 kcal Electronic energy + Delta-G solvation = -28318.291694 eV Core-core repulsion = 24466.520644 eV Total energy + Delta-G solvation = -3851.771050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.89990 -39.64377 -38.46883 -37.69099 -34.47189 -33.91014 -32.52139 -31.97261 -31.59293 -30.00701 -28.53925 -26.92488 -25.30656 -24.55982 -23.91130 -22.58164 -21.72096 -20.91104 -20.22787 -19.75346 -18.68185 -17.93806 -17.30287 -16.68879 -16.57159 -16.31150 -15.99661 -14.67925 -14.57930 -14.26325 -14.20104 -14.15220 -13.81680 -13.59546 -13.39596 -13.17500 -13.02557 -12.89682 -12.37620 -12.14274 -11.64332 -11.59300 -11.55241 -11.06565 -10.92368 -10.76374 -10.49935 -10.46171 -10.26865 -10.13961 -10.09248 -9.94582 -9.87005 -9.83665 -9.39795 -8.85100 -8.53042 -8.39984 -6.85715 -6.01527 -3.32739 -0.10826 0.47985 1.33678 1.96619 2.85351 3.17649 3.24556 3.47921 3.49801 3.59105 3.63089 3.66056 4.02385 4.35571 4.54560 4.69703 4.82150 4.90759 5.10156 5.15587 5.26020 5.31114 5.33238 5.39580 5.45479 5.71062 5.76585 5.95094 6.00029 6.07335 6.08734 6.18218 6.30461 6.41309 6.52085 6.59818 6.69116 6.79890 6.93595 6.99016 7.06801 7.12714 7.23296 7.36243 7.65337 7.94762 8.24908 8.51432 9.01224 9.77423 10.39974 11.21315 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018556 B = 0.003167 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.566385 B = 8838.604527 C = 9545.714341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.157 3.843 4 H 0.035 0.965 5 C 0.134 3.866 6 H 0.095 0.905 7 N -0.705 5.705 8 C 0.593 3.407 9 O -0.530 6.530 10 C -0.055 4.055 11 C 0.105 3.895 12 N -0.465 5.465 13 C 0.177 3.823 14 C -0.003 4.003 15 C -0.174 4.174 16 C 0.141 3.859 17 N -0.266 5.266 18 N -0.253 5.253 19 C -0.143 4.143 20 C 0.141 3.859 21 N -0.588 5.588 22 C -0.324 4.324 23 H 0.057 0.943 24 C -0.020 4.020 25 N -0.911 5.911 26 Si 1.070 2.930 27 H -0.293 1.293 28 H -0.291 1.291 29 H -0.289 1.289 30 H 0.092 0.908 31 H 0.037 0.963 32 H 0.028 0.972 33 H 0.036 0.964 34 H 0.057 0.943 35 H 0.405 0.595 36 H 0.204 0.796 37 H 0.165 0.835 38 H 0.161 0.839 39 H 0.206 0.794 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.032 0.968 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.543 3.603 -22.259 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.050 3.950 4 H 0.053 0.947 5 C 0.030 3.970 6 H 0.113 0.887 7 N -0.356 5.356 8 C 0.378 3.622 9 O -0.407 6.407 10 C -0.175 4.175 11 C -0.056 4.056 12 N -0.186 5.186 13 C -0.067 4.067 14 C -0.031 4.031 15 C -0.200 4.200 16 C -0.051 4.051 17 N -0.077 5.077 18 N -0.024 5.024 19 C -0.183 4.183 20 C 0.016 3.984 21 N -0.314 5.314 22 C -0.453 4.453 23 H 0.075 0.925 24 C -0.224 4.224 25 N -0.550 5.550 26 Si 0.900 3.100 27 H -0.220 1.220 28 H -0.218 1.218 29 H -0.215 1.215 30 H 0.110 0.890 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.242 0.758 36 H 0.221 0.779 37 H 0.183 0.817 38 H 0.179 0.821 39 H 0.222 0.778 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.432 3.350 -19.780 20.784 hybrid contribution 0.093 0.033 -2.107 2.109 sum 5.525 3.383 -21.887 22.825 Atomic orbital electron populations 1.21842 0.95574 0.98700 1.04182 1.21865 0.97120 0.97514 0.99613 1.21215 0.89468 0.92425 0.91930 0.94731 1.22167 0.96107 0.99205 0.79566 0.88743 1.46093 1.14041 1.61018 1.14426 1.16540 0.82630 0.79076 0.83975 1.90877 1.52500 1.43621 1.53656 1.21609 0.93298 1.11674 0.90917 1.23224 0.95121 0.97991 0.89271 1.70499 1.16616 1.15569 1.15872 1.21284 0.89509 1.05943 0.89956 1.20672 0.95005 0.91921 0.95487 1.21590 0.94453 1.03586 1.00370 1.24248 1.01124 0.91354 0.88350 1.75634 0.92080 1.14023 1.25917 1.46948 1.08208 1.36521 1.10772 1.23183 0.99519 0.97666 0.97929 1.21595 0.85483 0.98497 0.92869 1.44435 1.01886 1.65730 1.19380 1.19565 0.84878 1.47693 0.93161 0.92506 1.25994 1.03842 0.98812 0.93769 1.70720 1.17596 1.28588 1.38137 0.83436 0.74856 0.76106 0.75583 1.22015 1.21774 1.21539 0.88981 0.94420 0.95274 0.94506 0.92424 0.75771 0.77936 0.81728 0.82129 0.77810 0.91794 0.91407 0.93313 0.95019 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.15 37.16 0.34 -2.59 16 2 C -0.12 -2.45 5.46 -26.73 -0.15 -2.60 16 3 C 0.16 3.25 2.99 -66.95 -0.20 3.05 16 4 H 0.04 0.72 7.68 -51.93 -0.40 0.32 16 5 C 0.13 2.55 2.76 -66.09 -0.18 2.37 16 6 H 0.09 1.91 7.40 -51.93 -0.38 1.53 16 7 N -0.70 -11.85 5.20 -53.47 -0.28 -12.13 16 8 C 0.59 10.03 7.77 -13.07 -0.10 9.93 16 9 O -0.53 -10.21 16.63 5.13 0.09 -10.13 16 10 C -0.06 -0.80 7.10 -81.85 -0.58 -1.39 16 11 C 0.11 1.37 11.69 -17.18 -0.20 1.17 16 12 N -0.47 -5.93 11.25 -12.23 -0.14 -6.07 16 13 C 0.18 2.02 7.85 -156.07 -1.23 0.79 16 14 C 0.00 -0.02 10.11 -39.37 -0.40 -0.42 16 15 C -0.17 -0.77 10.03 -39.66 -0.40 -1.17 16 16 C 0.14 0.87 11.30 -17.38 -0.20 0.67 16 17 N -0.27 -2.90 10.04 30.62 0.31 -2.60 16 18 N -0.25 -3.24 4.05 -8.68 -0.04 -3.27 16 19 C -0.14 -2.81 6.77 -24.58 -0.17 -2.97 16 20 C 0.14 3.28 5.81 -2.53 -0.01 3.26 16 21 N -0.59 -14.30 2.82 -162.57 -0.46 -14.76 16 22 C -0.32 -8.61 7.01 -15.06 -0.11 -8.72 16 23 H 0.06 1.52 7.66 -52.49 -0.40 1.12 16 24 C -0.02 -0.56 5.23 -17.43 -0.09 -0.65 16 25 N -0.91 -26.83 13.14 55.49 0.73 -26.10 16 26 Si 1.07 24.77 29.97 -169.99 -5.09 19.67 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 30 H 0.09 2.16 5.69 -51.93 -0.30 1.86 16 31 H 0.04 0.71 8.12 -51.92 -0.42 0.29 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.41 6.39 6.31 -40.82 -0.26 6.13 16 36 H 0.20 2.16 8.06 -52.48 -0.42 1.74 16 37 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.16 0.08 8.06 -52.48 -0.42 -0.34 16 39 H 0.21 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.03 0.79 6.68 -51.93 -0.35 0.45 16 44 H 0.27 8.07 6.18 -40.82 -0.25 7.82 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -34.20 362.24 -8.87 -43.07 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.78 Total: 6.11 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -3.67 Total: 0.75 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: 0.13 Total: -64.92 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.09 Total: 19.67 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.20 -8.87 -43.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087752903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.666 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds