Wall clock time and date at job start Tue Mar 31 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09000 * 109.99916 * 305.73102 * 3 2 1 5 5 C 1.54340 * 109.99273 * 184.69906 * 3 2 1 6 6 H 1.09000 * 110.66494 * 337.04632 * 5 3 2 7 7 N 1.46499 * 110.85229 * 100.19447 * 5 3 2 8 8 C 1.34775 * 120.00280 * 200.14659 * 7 5 3 9 9 O 1.21761 * 119.99743 * 0.02562 * 8 7 5 10 10 C 1.46192 * 120.00146 * 180.02562 * 8 7 5 11 11 C 1.38718 * 126.75955 * 180.02562 * 10 8 7 12 12 N 1.32291 * 108.17533 * 180.02562 * 11 10 8 13 13 C 1.33131 * 109.71044 * 359.97438 * 12 11 10 14 14 C 1.40631 * 132.28186 * 180.02562 * 13 12 11 15 15 C 1.36312 * 119.21665 * 179.97438 * 14 13 12 16 16 C 1.39874 * 120.12433 * 359.97438 * 15 14 13 17 17 N 1.30800 * 120.77894 * 0.04271 * 16 15 14 18 18 N 1.36649 * 108.63119 * 359.73598 * 13 12 11 19 19 C 1.55154 * 103.01909 * 218.66645 * 5 3 2 20 20 C 1.54911 * 101.58329 * 35.30275 * 19 5 3 21 21 N 1.47013 * 109.88458 * 66.82841 * 3 2 1 22 22 C 1.36939 * 125.64991 * 298.39848 * 21 3 2 23 23 H 1.07997 * 119.99481 * 325.75931 * 22 21 3 24 24 C 1.38811 * 120.00056 * 145.75910 * 22 21 3 25 25 N 1.31621 * 120.00421 * 339.04666 * 24 22 21 26 26 Si 1.86799 * 119.99670 * 159.04544 * 24 22 21 27 27 H 1.48509 * 109.47062 * 269.99861 * 26 24 22 28 28 H 1.48498 * 109.47474 * 30.00095 * 26 24 22 29 29 H 1.48500 * 109.47061 * 150.00517 * 26 24 22 30 30 H 1.08992 * 109.47208 * 291.18083 * 1 2 3 31 31 H 1.09008 * 109.47223 * 51.18114 * 1 2 3 32 32 H 1.09004 * 109.47139 * 171.17725 * 1 2 3 33 33 H 1.09008 * 109.46903 * 240.00295 * 2 1 3 34 34 H 1.08999 * 109.47326 * 120.00318 * 2 1 3 35 35 H 0.96999 * 119.99485 * 20.15137 * 7 5 3 36 36 H 1.08003 * 125.91563 * 359.97438 * 11 10 8 37 37 H 1.07997 * 120.38885 * 359.97438 * 14 13 12 38 38 H 1.08005 * 119.93438 * 180.02562 * 15 14 13 39 39 H 1.07999 * 119.60828 * 180.02562 * 16 15 14 40 40 H 1.08994 * 111.00114 * 277.22922 * 19 5 3 41 41 H 1.09000 * 111.03428 * 153.39530 * 19 5 3 42 42 H 1.08995 * 110.36400 * 204.14906 * 20 19 5 43 43 H 1.09007 * 110.45948 * 81.87288 * 20 19 5 44 44 H 0.97000 * 119.99107 * 353.68788 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9933 -0.8315 5 6 3.5787 1.4582 -0.1188 6 1 4.0005 0.5125 0.2217 7 7 3.9926 1.7425 -1.4951 8 6 5.2318 1.4106 -1.9083 9 8 6.0071 0.8741 -1.1379 10 6 5.6449 1.6949 -3.2816 11 6 6.8779 1.4151 -3.8523 12 7 6.8538 1.8268 -5.1093 13 6 5.6653 2.3600 -5.3843 14 6 5.1332 2.9332 -6.5531 15 6 3.8551 3.4071 -6.5393 16 6 3.0870 3.3210 -5.3735 17 7 3.5797 2.7886 -4.2851 18 7 4.8847 2.2874 -4.2651 19 6 3.9906 2.6157 0.8286 20 6 2.9392 2.4821 1.9584 21 7 1.6938 2.0952 1.2710 22 6 0.4247 2.3040 1.7413 23 1 -0.3789 2.5148 1.0513 24 6 0.1713 2.2446 3.1048 25 7 1.0006 1.6038 3.9011 26 14 -1.3468 3.0741 3.8095 27 1 -1.0178 4.4731 4.1836 28 1 -2.4280 3.0751 2.7916 29 1 -1.8013 2.3336 5.0138 30 1 -0.3633 0.3713 0.9582 31 1 -0.3634 0.6442 -0.8007 32 1 -0.3634 -1.0155 -0.1576 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.3747 2.1696 -2.1088 36 1 7.7134 0.9437 -3.3561 37 1 5.7300 2.9971 -7.4509 38 1 3.4346 3.8492 -7.4305 39 1 2.0752 3.6987 -5.3721 40 1 3.9052 3.5799 0.3275 41 1 4.9993 2.4659 1.2138 42 1 2.8095 3.4355 2.4705 43 1 3.2373 1.7092 2.6668 44 1 1.7377 1.0965 3.5266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087752903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:13 Heat of formation + Delta-G solvation = 83.605530 kcal Electronic energy + Delta-G solvation = -28319.288689 eV Core-core repulsion = 24466.520644 eV Total energy + Delta-G solvation = -3852.768045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.71272 -41.06000 -39.55686 -38.93101 -35.89568 -34.87236 -34.25517 -33.65169 -32.35833 -31.07854 -30.23235 -28.55272 -26.53145 -25.80464 -24.92797 -23.76443 -23.29218 -22.11933 -21.79042 -21.32610 -19.83607 -19.24335 -18.57284 -17.70478 -17.52174 -17.42725 -16.89464 -16.22227 -16.09199 -15.76069 -15.59890 -15.26536 -15.05277 -14.96214 -14.71929 -14.63084 -14.05912 -13.87974 -13.82779 -13.73500 -13.35801 -12.88347 -12.72554 -12.57326 -12.38616 -12.24948 -12.18854 -11.92729 -11.89526 -11.80179 -11.61385 -11.41322 -11.38647 -11.15198 -10.66454 -10.46412 -10.26032 -9.43074 -8.91445 -8.13990 -5.44958 -0.65344 -0.31883 0.57959 1.12018 1.59688 1.67140 1.83485 1.89683 2.06191 2.20897 2.65768 2.83458 2.97543 3.26184 3.41597 3.60378 3.67272 3.71027 3.79365 3.86602 4.02639 4.13871 4.21789 4.22495 4.33090 4.38535 4.43357 4.51000 4.61765 4.79836 4.81712 4.84817 4.88297 4.93580 5.00406 5.09623 5.13155 5.17671 5.25785 5.31841 5.46385 5.62994 5.87276 6.23209 6.32469 6.39642 6.47459 6.92769 6.97157 7.71124 8.35917 9.06105 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018556 B = 0.003167 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.566385 B = 8838.604527 C = 9545.714341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 C 0.159 3.841 4 H 0.045 0.955 5 C 0.148 3.852 6 H 0.080 0.920 7 N -0.699 5.699 8 C 0.596 3.404 9 O -0.564 6.564 10 C -0.098 4.098 11 C 0.108 3.892 12 N -0.491 5.491 13 C 0.182 3.818 14 C -0.026 4.026 15 C -0.135 4.135 16 C 0.149 3.851 17 N -0.311 5.311 18 N -0.262 5.262 19 C -0.128 4.128 20 C 0.146 3.854 21 N -0.604 5.604 22 C -0.315 4.315 23 H 0.058 0.942 24 C -0.073 4.073 25 N -0.945 5.945 26 Si 1.117 2.883 27 H -0.287 1.287 28 H -0.267 1.267 29 H -0.297 1.297 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.032 0.968 35 H 0.412 0.588 36 H 0.213 0.787 37 H 0.196 0.804 38 H 0.215 0.785 39 H 0.249 0.751 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.028 0.972 43 H 0.007 0.993 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.987 5.208 -26.463 27.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C 0.052 3.948 4 H 0.062 0.938 5 C 0.042 3.958 6 H 0.098 0.902 7 N -0.351 5.351 8 C 0.384 3.616 9 O -0.444 6.444 10 C -0.217 4.217 11 C -0.054 4.054 12 N -0.211 5.211 13 C -0.064 4.064 14 C -0.053 4.053 15 C -0.160 4.160 16 C -0.041 4.041 17 N -0.123 5.123 18 N -0.032 5.032 19 C -0.167 4.167 20 C 0.021 3.979 21 N -0.330 5.330 22 C -0.444 4.444 23 H 0.075 0.925 24 C -0.270 4.270 25 N -0.586 5.586 26 Si 0.942 3.058 27 H -0.213 1.213 28 H -0.192 1.192 29 H -0.224 1.224 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.251 0.749 36 H 0.229 0.771 37 H 0.213 0.787 38 H 0.232 0.768 39 H 0.264 0.736 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.047 0.953 43 H 0.025 0.975 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.865 4.965 -24.034 24.844 hybrid contribution 0.483 -0.374 -1.101 1.259 sum 4.348 4.591 -25.135 25.918 Atomic orbital electron populations 1.21713 0.95135 1.00197 1.02485 1.21801 0.97420 0.96975 0.99520 1.21258 0.90602 0.92583 0.90319 0.93760 1.21801 0.94831 0.98219 0.80927 0.90197 1.45897 1.14455 1.61403 1.13307 1.16799 0.81947 0.78023 0.84851 1.90841 1.53282 1.45206 1.55027 1.21110 0.94571 1.15503 0.90480 1.23441 0.95028 0.97344 0.89574 1.70510 1.17867 1.17149 1.15612 1.22121 0.88932 1.04423 0.90901 1.21225 0.96559 0.92606 0.94923 1.22230 0.92761 0.99914 1.01131 1.25243 1.02655 0.88505 0.87648 1.75678 0.91476 1.16441 1.28734 1.46953 1.09112 1.36683 1.10472 1.23029 0.98564 0.98439 0.96691 1.21433 0.86416 0.96532 0.93563 1.44635 1.01625 1.66487 1.20251 1.19736 0.85661 1.45874 0.93166 0.92472 1.27271 1.05804 0.99236 0.94729 1.70842 1.18546 1.30787 1.38464 0.82824 0.72634 0.75188 0.75201 1.21340 1.19195 1.22418 0.92639 0.93056 0.93077 0.92035 0.94956 0.74897 0.77056 0.78738 0.76827 0.73551 0.90856 0.90744 0.95313 0.97473 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 9.15 71.98 0.66 -4.75 16 2 C -0.12 -4.73 5.46 30.59 0.17 -4.56 16 3 C 0.16 6.57 2.99 45.35 0.14 6.71 16 4 H 0.04 1.78 7.68 -2.39 -0.02 1.76 16 5 C 0.15 5.71 2.76 46.18 0.13 5.84 16 6 H 0.08 3.35 7.40 -2.39 -0.02 3.33 16 7 N -0.70 -23.52 5.20 -441.29 -2.30 -25.81 16 8 C 0.60 20.66 7.77 86.31 0.67 21.33 16 9 O -0.56 -22.62 16.63 -4.54 -0.08 -22.69 16 10 C -0.10 -2.90 7.10 40.40 0.29 -2.61 16 11 C 0.11 2.87 11.69 84.74 0.99 3.86 16 12 N -0.49 -12.28 11.25 -192.62 -2.17 -14.45 16 13 C 0.18 3.83 7.85 134.00 1.05 4.88 16 14 C -0.03 -0.24 10.11 22.40 0.23 -0.02 16 15 C -0.13 -0.41 10.03 22.22 0.22 -0.18 16 16 C 0.15 1.13 11.30 85.24 0.96 2.09 16 17 N -0.31 -6.03 10.04 -57.04 -0.57 -6.60 16 18 N -0.26 -6.42 4.05 -181.39 -0.74 -7.16 16 19 C -0.13 -5.10 6.77 31.99 0.22 -4.89 16 20 C 0.15 7.09 5.81 86.86 0.50 7.59 16 21 N -0.60 -29.96 2.82 -668.25 -1.88 -31.84 16 22 C -0.32 -16.92 7.01 84.03 0.59 -16.33 16 23 H 0.06 3.04 7.66 -2.91 -0.02 3.02 16 24 C -0.07 -4.09 5.23 84.86 0.44 -3.65 16 25 N -0.94 -57.75 13.14 21.65 0.28 -57.47 16 26 Si 1.12 50.32 29.97 68.60 2.06 52.38 16 27 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 28 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 29 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 30 H 0.05 2.60 5.69 -2.39 -0.01 2.59 16 31 H 0.05 1.84 8.12 -2.38 -0.02 1.82 16 32 H 0.05 1.74 8.14 -2.38 -0.02 1.73 16 33 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.03 1.44 8.14 -2.39 -0.02 1.43 16 35 H 0.41 12.69 6.31 -92.71 -0.59 12.11 16 36 H 0.21 4.78 8.06 -2.91 -0.02 4.75 16 37 H 0.20 0.59 8.06 -2.91 -0.02 0.56 16 38 H 0.21 -1.55 8.06 -2.91 -0.02 -1.58 16 39 H 0.25 -0.47 8.06 -2.91 -0.02 -0.50 16 40 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 42 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.01 0.40 6.68 -2.38 -0.02 0.38 16 44 H 0.26 16.02 6.18 -92.71 -0.57 15.44 16 Total: -1.00 -79.76 362.24 2.51 -77.25 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.64 Total: 21.08 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 7.25 Total: 15.31 kcal Atomic # 7 Polarization: -135.96 SS G_CDS: -7.37 Total: -143.33 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.08 Total: -22.69 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.06 Total: 52.38 kcal Total: -79.76 2.51 -77.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087752903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.859 kcal (2) G-P(sol) polarization free energy of solvation -79.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds