Wall clock time and date at job start Tue Mar 31 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46699 * 2 1 4 4 H 1.08993 * 109.87862 * 54.13289 * 3 2 1 5 5 C 1.54326 * 110.01018 * 293.03285 * 3 2 1 6 6 H 1.09003 * 110.72109 * 336.86479 * 5 3 2 7 7 N 1.46501 * 110.72192 * 99.95518 * 5 3 2 8 8 C 1.34768 * 120.00237 * 205.00167 * 7 5 3 9 9 O 1.21587 * 120.00514 * 0.02562 * 8 7 5 10 10 C 1.47607 * 119.99850 * 180.02562 * 8 7 5 11 11 C 1.41819 * 119.98281 * 0.02562 * 10 8 7 12 12 C 1.35634 * 119.60326 * 180.02562 * 11 10 8 13 13 C 1.41057 * 119.39991 * 359.97438 * 12 11 10 14 14 N 1.32179 * 133.25566 * 180.02562 * 13 12 11 15 15 N 1.28652 * 109.56938 * 179.97438 * 14 13 12 16 16 C 1.30724 * 110.33436 * 0.02562 * 15 14 13 17 17 N 1.36247 * 107.45906 * 359.97438 * 16 15 14 18 18 C 1.35844 * 133.53296 * 180.33370 * 17 16 15 19 19 C 1.55150 * 102.94562 * 218.32307 * 5 3 2 20 20 C 1.54689 * 101.67867 * 35.33379 * 19 5 3 21 21 N 1.47020 * 109.88233 * 175.15318 * 3 2 1 22 22 C 1.36938 * 125.64739 * 298.47577 * 21 3 2 23 23 H 1.08005 * 119.99480 * 347.82561 * 22 21 3 24 24 C 1.38808 * 120.00550 * 168.10310 * 22 21 3 25 25 N 1.31626 * 119.99543 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00543 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47026 * 59.99992 * 26 24 22 28 28 H 1.48494 * 109.47425 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47237 * 300.00440 * 26 24 22 30 30 H 1.09000 * 109.47495 * 305.44830 * 1 2 3 31 31 H 1.09005 * 109.47437 * 65.45110 * 1 2 3 32 32 H 1.08996 * 109.47122 * 185.44729 * 1 2 3 33 33 H 1.09000 * 109.47336 * 239.99825 * 2 1 3 34 34 H 1.09001 * 109.46966 * 119.99441 * 2 1 3 35 35 H 0.97010 * 119.99248 * 25.00321 * 7 5 3 36 36 H 1.08002 * 120.19466 * 359.97067 * 11 10 8 37 37 H 1.08001 * 120.29949 * 179.97438 * 12 11 10 38 38 H 1.08003 * 126.27038 * 179.97438 * 16 15 14 39 39 H 1.08000 * 119.80850 * 359.92360 * 18 17 16 40 40 H 1.09001 * 111.00651 * 153.57675 * 19 5 3 41 41 H 1.09007 * 111.00616 * 277.43099 * 19 5 3 42 42 H 1.09001 * 110.39799 * 204.36620 * 20 19 5 43 43 H 1.09000 * 110.23668 * 82.11083 * 20 19 5 44 44 H 0.96999 * 119.99985 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5972 1.9921 0.8306 5 6 1.6810 2.1295 -1.3345 6 1 1.5269 1.3896 -2.1200 7 7 0.4935 2.9735 -1.1801 8 6 -0.2789 3.2520 -2.2488 9 8 0.0095 2.8025 -3.3411 10 6 -1.4750 4.1028 -2.0932 11 6 -1.8108 4.6274 -0.8191 12 6 -2.9119 5.4079 -0.6849 13 6 -3.7059 5.6858 -1.8171 14 7 -4.8073 6.3936 -1.9995 15 7 -5.1526 6.3419 -3.2377 16 6 -4.3079 5.6091 -3.9147 17 7 -3.3601 5.1661 -3.0419 18 6 -2.2544 4.3886 -3.1767 19 6 2.9349 2.9947 -1.6283 20 6 4.0702 2.0954 -1.0849 21 7 3.5054 1.4549 0.1168 22 6 4.2263 0.9588 1.1701 23 1 3.7255 0.6921 2.0892 24 6 5.6012 0.8039 1.0587 25 7 6.2122 1.1345 -0.0593 26 14 6.5845 0.1279 2.4958 27 1 6.0964 -1.2336 2.8328 28 1 8.0210 0.0616 2.1252 29 1 6.4180 1.0186 3.6723 30 1 -0.3634 0.5960 0.8372 31 1 -0.3634 0.4270 -0.9348 32 1 -0.3633 -1.0230 0.0976 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.2632 3.3318 -0.3085 36 1 -1.1939 4.4060 0.0392 37 1 -3.1783 5.8129 0.2802 38 1 -4.3530 5.3943 -4.9722 39 1 -1.9926 3.9909 -4.1462 40 1 3.0488 3.1668 -2.6986 41 1 2.8946 3.9385 -1.0845 42 1 4.9389 2.6983 -0.8207 43 1 4.3411 1.3419 -1.8245 44 1 7.1729 1.0260 -0.1373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087760306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:00 Heat of formation + Delta-G solvation = 102.213407 kcal Electronic energy + Delta-G solvation = -27803.156487 eV Core-core repulsion = 23951.195340 eV Total energy + Delta-G solvation = -3851.961147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.96112 -40.34256 -38.47691 -37.53269 -34.76569 -34.06938 -32.89307 -32.09837 -31.48208 -29.83509 -29.09372 -26.89631 -25.35868 -24.21071 -24.14641 -22.90848 -22.36395 -21.10707 -20.37570 -19.90289 -18.80611 -17.68981 -17.29723 -16.95097 -16.89916 -16.24637 -15.57332 -15.26169 -14.97750 -14.82395 -14.44980 -14.11739 -13.88380 -13.79521 -13.31845 -12.88206 -12.79471 -12.51534 -12.15251 -12.04930 -12.03419 -11.78077 -11.72956 -11.25566 -11.01227 -10.97169 -10.89900 -10.74061 -10.57042 -10.47993 -10.18692 -10.05760 -10.04294 -9.83001 -9.72304 -8.87082 -8.66772 -8.59688 -6.91332 -5.81483 -3.18518 -0.00199 0.45168 1.75160 2.10002 2.58946 2.99708 3.18176 3.34448 3.39514 3.40506 3.59529 4.04244 4.07187 4.27516 4.29509 4.42344 4.44320 4.81025 5.14366 5.16935 5.25941 5.35773 5.38753 5.45459 5.49200 5.52924 5.64109 5.68702 5.73471 5.77487 5.94703 6.09817 6.12510 6.30156 6.31324 6.35605 6.43128 6.55411 6.59475 6.83552 7.00539 7.39972 7.44447 7.52194 7.71733 8.03639 8.08219 8.19270 9.10554 9.71572 10.37460 11.29472 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027249 B = 0.002506 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.314446 B =11170.227634 C =11314.066588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.137 3.863 6 H 0.098 0.902 7 N -0.700 5.700 8 C 0.567 3.433 9 O -0.535 6.535 10 C -0.147 4.147 11 C -0.066 4.066 12 C -0.080 4.080 13 C 0.201 3.799 14 N -0.290 5.290 15 N -0.252 5.252 16 C 0.126 3.874 17 N -0.397 5.397 18 C 0.138 3.862 19 C -0.156 4.156 20 C 0.172 3.828 21 N -0.594 5.594 22 C -0.229 4.229 23 H 0.076 0.924 24 C -0.003 4.003 25 N -0.917 5.917 26 Si 0.911 3.089 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.285 1.285 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.399 0.601 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.231 0.769 39 H 0.188 0.812 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.026 0.974 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.424 6.146 -4.343 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.053 0.947 5 C 0.033 3.967 6 H 0.116 0.884 7 N -0.350 5.350 8 C 0.352 3.648 9 O -0.413 6.413 10 C -0.154 4.154 11 C -0.091 4.091 12 C -0.101 4.101 13 C -0.048 4.048 14 N -0.135 5.135 15 N -0.089 5.089 16 C -0.156 4.156 17 N -0.077 5.077 18 C 0.013 3.987 19 C -0.196 4.196 20 C 0.047 3.953 21 N -0.318 5.318 22 C -0.357 4.357 23 H 0.093 0.907 24 C -0.200 4.200 25 N -0.564 5.564 26 Si 0.741 3.259 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.211 1.211 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.234 0.766 36 H 0.171 0.829 37 H 0.182 0.818 38 H 0.247 0.753 39 H 0.205 0.795 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.044 0.956 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.313 6.751 -4.865 19.209 hybrid contribution 1.543 -1.086 0.755 2.032 sum -15.771 5.664 -4.110 17.254 Atomic orbital electron populations 1.21773 0.97260 1.00646 1.00798 1.22027 0.93558 0.99097 1.02551 1.21066 0.87354 0.93462 0.92811 0.94736 1.22236 0.82843 0.92408 0.99260 0.88377 1.45950 1.27139 1.51332 1.10599 1.17547 0.81948 0.80350 0.84925 1.90823 1.72264 1.52843 1.25421 1.19639 0.98655 1.03681 0.93462 1.21278 0.96179 0.94835 0.96779 1.20195 0.93546 0.99835 0.96537 1.22603 0.96807 0.98334 0.87092 1.74949 1.09724 1.19779 1.09013 1.74199 1.21558 1.14369 0.98806 1.26684 0.88281 1.01546 0.99099 1.43894 1.19345 1.33842 1.10656 1.21761 0.84203 0.90928 1.01834 1.23408 0.96516 0.99161 1.00523 1.21453 0.93170 0.93165 0.87554 1.44434 0.98388 1.68898 1.20114 1.18893 0.89328 1.36305 0.91223 0.90654 1.24872 0.96875 1.01009 0.97260 1.69907 1.08940 1.52592 1.24945 0.86219 0.79203 0.78998 0.81433 1.21072 1.21583 1.21115 0.93406 0.93442 0.93605 0.92342 0.91539 0.76570 0.82931 0.81833 0.75298 0.79530 0.91764 0.91920 0.90175 0.95586 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.65 37.16 0.36 -1.58 16 2 C -0.13 -2.25 5.43 -26.73 -0.15 -2.39 16 3 C 0.16 2.88 2.91 -66.95 -0.19 2.69 16 4 H 0.04 0.59 7.72 -51.93 -0.40 0.19 16 5 C 0.14 2.15 2.10 -66.10 -0.14 2.02 16 6 H 0.10 1.70 7.18 -51.93 -0.37 1.32 16 7 N -0.70 -8.29 4.91 -53.05 -0.26 -8.55 16 8 C 0.57 6.75 7.76 -12.44 -0.10 6.66 16 9 O -0.54 -8.14 15.92 5.29 0.08 -8.06 16 10 C -0.15 -1.33 5.84 -105.34 -0.61 -1.95 16 11 C -0.07 -0.47 9.53 -39.14 -0.37 -0.84 16 12 C -0.08 -0.62 10.09 -39.44 -0.40 -1.02 16 13 C 0.20 2.13 7.92 -155.95 -1.23 0.89 16 14 N -0.29 -3.74 12.29 31.19 0.38 -3.36 16 15 N -0.25 -3.04 12.18 29.87 0.36 -2.68 16 16 C 0.13 1.08 12.97 -89.08 -1.16 -0.07 16 17 N -0.40 -3.66 2.94 -63.63 -0.19 -3.85 16 18 C 0.14 1.16 10.53 -16.40 -0.17 0.99 16 19 C -0.16 -2.75 6.76 -24.70 -0.17 -2.92 16 20 C 0.17 3.88 5.45 -2.65 -0.01 3.86 16 21 N -0.59 -13.69 3.13 -162.71 -0.51 -14.20 16 22 C -0.23 -5.90 9.72 -15.06 -0.15 -6.04 16 23 H 0.08 1.87 7.83 -52.48 -0.41 1.46 16 24 C 0.00 -0.08 5.47 -17.43 -0.10 -0.18 16 25 N -0.92 -25.63 10.48 55.49 0.58 -25.05 16 26 Si 0.91 21.07 29.55 -169.99 -5.02 16.05 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.62 7.48 -51.93 -0.39 0.23 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 1.07 8.03 -51.93 -0.42 0.65 16 34 H 0.07 1.23 7.85 -51.93 -0.41 0.83 16 35 H 0.40 3.70 6.40 -40.82 -0.26 3.44 16 36 H 0.15 0.71 6.44 -52.49 -0.34 0.38 16 37 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.23 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.19 1.29 7.56 -52.49 -0.40 0.89 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.08 2.04 6.75 -51.93 -0.35 1.69 16 43 H 0.03 0.65 8.11 -51.93 -0.42 0.22 16 44 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -32.79 363.19 -9.52 -42.31 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.84 Total: 1.81 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -4.59 Total: 0.11 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.37 Total: -57.69 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.08 Total: -8.06 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.79 -9.52 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087760306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.519 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds