Wall clock time and date at job start Tue Mar 31 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47403 * 2 1 4 4 H 1.08997 * 109.87409 * 55.80058 * 3 2 1 5 5 C 1.54330 * 109.88428 * 294.78670 * 3 2 1 6 6 H 1.08999 * 110.71678 * 336.93085 * 5 3 2 7 7 N 1.46498 * 110.71781 * 100.02329 * 5 3 2 8 8 C 1.34781 * 119.99494 * 205.00105 * 7 5 3 9 9 O 1.21544 * 120.00474 * 0.02562 * 8 7 5 10 10 C 1.47888 * 119.99668 * 180.02562 * 8 7 5 11 11 C 1.39897 * 125.69469 * 179.71705 * 10 8 7 12 12 C 1.38583 * 107.59239 * 179.83084 * 11 10 8 13 13 N 1.34118 * 132.34132 * 180.02562 * 12 11 10 14 14 C 1.31136 * 120.83747 * 180.38800 * 13 12 11 15 15 C 1.40343 * 120.29915 * 359.97438 * 14 13 12 16 16 C 1.35454 * 119.46347 * 359.97025 * 15 14 13 17 17 N 1.36666 * 119.14165 * 0.06580 * 16 15 14 18 18 N 1.32378 * 125.69034 * 0.02562 * 10 8 7 19 19 C 1.55156 * 102.94378 * 218.39104 * 5 3 2 20 20 C 1.54910 * 101.58227 * 35.50021 * 19 5 3 21 21 N 1.47023 * 109.88585 * 176.97922 * 3 2 1 22 22 C 1.36940 * 125.64418 * 298.39466 * 21 3 2 23 23 H 1.08000 * 120.00170 * 345.37884 * 22 21 3 24 24 C 1.38813 * 119.99705 * 165.37706 * 22 21 3 25 25 N 1.31622 * 120.00128 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99796 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47134 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47032 * 120.00052 * 26 24 22 29 29 H 1.48497 * 109.46811 * 239.99552 * 26 24 22 30 30 H 1.08995 * 109.47534 * 185.57623 * 1 2 3 31 31 H 1.09001 * 109.46883 * 305.58263 * 1 2 3 32 32 H 1.09007 * 109.46813 * 65.57584 * 1 2 3 33 33 H 1.09005 * 109.46859 * 239.99762 * 2 1 3 34 34 H 1.09002 * 109.46729 * 120.00129 * 2 1 3 35 35 H 0.96998 * 120.00322 * 25.00803 * 7 5 3 36 36 H 1.08008 * 126.20114 * 359.97438 * 11 10 8 37 37 H 1.07999 * 119.84703 * 179.97438 * 14 13 12 38 38 H 1.08004 * 120.26675 * 180.02562 * 15 14 13 39 39 H 1.07995 * 120.42844 * 180.02562 * 16 15 14 40 40 H 1.08994 * 111.00406 * 153.57238 * 19 5 3 41 41 H 1.09000 * 111.00085 * 277.42821 * 19 5 3 42 42 H 1.09003 * 110.36444 * 204.15530 * 20 19 5 43 43 H 1.08996 * 110.36895 * 81.82670 * 20 19 5 44 44 H 0.97001 * 119.99362 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6204 1.9838 0.8478 5 6 1.6415 2.1401 -1.3176 6 1 1.4636 1.4065 -2.1039 7 7 0.4595 2.9829 -1.1207 8 6 -0.3446 3.2701 -2.1636 9 8 -0.0894 2.8295 -3.2672 10 6 -1.5375 4.1214 -1.9650 11 6 -2.4464 4.4978 -2.9596 12 6 -3.4161 5.2882 -2.3635 13 7 -4.5042 5.9036 -2.8494 14 6 -5.2789 6.6164 -2.0674 15 6 -4.9799 6.7464 -0.7024 16 6 -3.8846 6.1291 -0.1985 17 7 -3.0924 5.3925 -1.0338 18 7 -1.9202 4.6591 -0.8175 19 6 2.8864 3.0075 -1.6420 20 6 4.0373 2.0987 -1.1427 21 7 3.5085 1.4536 0.0729 22 6 4.2604 0.9478 1.0995 23 1 3.7941 0.7097 2.0441 24 6 5.6220 0.7410 0.9260 25 7 6.1903 1.0306 -0.2254 26 14 6.6477 0.0503 2.3262 27 1 5.7776 -0.1901 3.5053 28 1 7.2694 -1.2291 1.9000 29 1 7.7115 1.0217 2.6864 30 1 -0.3634 -1.0227 0.0999 31 1 -0.3633 0.5980 0.8358 32 1 -0.3633 0.4250 -0.9358 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.2556 3.3344 -0.2399 36 1 -2.4019 4.2204 -4.0026 37 1 -6.1509 7.1055 -2.4758 38 1 -5.6185 7.3332 -0.0587 39 1 -3.6401 6.2183 0.8496 40 1 2.9681 3.1881 -2.7138 41 1 2.8627 3.9469 -1.0897 42 1 4.9162 2.6970 -0.9029 43 1 4.2816 1.3484 -1.8946 44 1 7.1417 0.8857 -0.3466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087769897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:57 Heat of formation + Delta-G solvation = 111.605194 kcal Electronic energy + Delta-G solvation = -27657.569829 eV Core-core repulsion = 23806.015941 eV Total energy + Delta-G solvation = -3851.553888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64498 -39.84676 -38.32674 -37.49631 -34.41938 -34.09914 -32.77517 -31.90848 -31.31419 -29.46918 -29.00470 -26.83491 -25.53392 -24.53503 -24.00348 -22.79659 -21.89001 -20.47594 -20.19477 -19.56834 -18.54854 -18.02338 -16.96144 -16.82652 -16.46360 -15.92452 -15.74985 -14.87878 -14.79260 -14.64350 -14.13615 -14.00116 -13.78028 -13.74899 -13.43310 -13.13482 -12.91098 -12.68427 -12.04445 -11.92903 -11.68467 -11.64164 -11.60078 -11.15019 -10.90905 -10.84189 -10.61336 -10.47103 -10.38844 -10.32072 -10.05773 -9.94685 -9.90494 -9.71757 -9.65235 -8.69559 -8.57856 -8.32129 -6.80409 -5.75243 -3.11532 0.07701 0.36131 1.57025 1.63258 2.96724 3.04072 3.32402 3.38657 3.44604 3.46873 3.49519 3.75822 3.94564 4.41632 4.47835 4.56035 4.86605 4.97566 5.09183 5.25502 5.36770 5.40654 5.50672 5.55457 5.58135 5.77171 5.80525 5.86676 5.92284 6.05684 6.08133 6.23897 6.26804 6.43084 6.47475 6.55410 6.67743 6.71539 6.86594 6.95359 7.14606 7.18274 7.51550 7.60276 7.66623 7.79468 8.21707 8.27706 9.18322 9.79159 10.46996 11.36820 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.002512 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.079349 B =11145.726191 C =11350.104416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.161 3.839 4 H 0.036 0.964 5 C 0.135 3.865 6 H 0.099 0.901 7 N -0.694 5.694 8 C 0.596 3.404 9 O -0.519 6.519 10 C 0.081 3.919 11 C -0.199 4.199 12 C 0.246 3.754 13 N -0.456 5.456 14 C 0.177 3.823 15 C -0.224 4.224 16 C 0.163 3.837 17 N -0.307 5.307 18 N -0.276 5.276 19 C -0.157 4.157 20 C 0.174 3.826 21 N -0.594 5.594 22 C -0.227 4.227 23 H 0.076 0.924 24 C -0.004 4.004 25 N -0.916 5.916 26 Si 0.910 3.090 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.405 0.595 36 H 0.173 0.827 37 H 0.181 0.819 38 H 0.169 0.831 39 H 0.182 0.818 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.029 0.971 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.701 11.965 -0.454 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.054 0.946 5 C 0.031 3.969 6 H 0.117 0.883 7 N -0.343 5.343 8 C 0.377 3.623 9 O -0.393 6.393 10 C -0.079 4.079 11 C -0.230 4.230 12 C 0.020 3.980 13 N -0.167 5.167 14 C -0.009 4.009 15 C -0.248 4.248 16 C 0.029 3.971 17 N -0.080 5.080 18 N -0.105 5.105 19 C -0.197 4.197 20 C 0.049 3.951 21 N -0.318 5.318 22 C -0.355 4.355 23 H 0.093 0.907 24 C -0.201 4.201 25 N -0.562 5.562 26 Si 0.740 3.260 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.218 1.218 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.240 0.760 36 H 0.191 0.809 37 H 0.198 0.802 38 H 0.187 0.813 39 H 0.199 0.801 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.047 0.953 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.829 11.363 -0.932 25.518 hybrid contribution 0.301 -0.090 1.277 1.315 sum -22.528 11.274 0.345 25.193 Atomic orbital electron populations 1.21776 0.97283 1.00500 1.00939 1.22013 0.93521 0.99072 1.02490 1.21077 0.87122 0.93409 0.93108 0.94638 1.22251 0.83016 0.92415 0.99196 0.88318 1.45978 1.26185 1.50933 1.11243 1.16816 0.80587 0.79810 0.85062 1.90827 1.72225 1.52159 1.24046 1.22281 0.96841 0.97578 0.91230 1.21011 0.94759 1.05743 1.01521 1.20551 0.95230 0.99960 0.82213 1.68263 1.02694 1.09255 1.36453 1.23451 0.96551 0.90923 0.89928 1.21869 0.99160 1.05552 0.98201 1.22119 0.88709 0.88872 0.97354 1.47181 1.18669 1.33282 1.08893 1.78165 0.97121 1.14104 1.21148 1.23449 0.96543 0.99124 1.00553 1.21440 0.93068 0.92897 0.87677 1.44449 0.98290 1.68383 1.20718 1.18983 0.89902 1.35761 0.90845 0.90654 1.24913 0.97243 1.00953 0.96979 1.69940 1.10590 1.52902 1.22812 0.86082 0.80242 0.78496 0.81155 1.20461 1.21689 1.21776 0.93646 0.93472 0.93382 0.92252 0.91649 0.75967 0.80913 0.80169 0.81348 0.80128 0.91674 0.91916 0.90732 0.95267 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.58 37.16 0.36 -1.92 16 2 C -0.13 -2.47 5.41 -26.73 -0.14 -2.61 16 3 C 0.16 3.23 2.94 -66.95 -0.20 3.03 16 4 H 0.04 0.70 7.71 -51.93 -0.40 0.30 16 5 C 0.14 2.48 2.02 -66.09 -0.13 2.35 16 6 H 0.10 1.93 7.18 -51.93 -0.37 1.55 16 7 N -0.69 -10.90 4.91 -52.96 -0.26 -11.16 16 8 C 0.60 9.69 7.83 -12.31 -0.10 9.60 16 9 O -0.52 -9.84 16.53 5.33 0.09 -9.75 16 10 C 0.08 1.17 7.05 -83.06 -0.59 0.58 16 11 C -0.20 -2.72 10.65 -38.83 -0.41 -3.13 16 12 C 0.25 3.00 7.90 -155.42 -1.23 1.77 16 13 N -0.46 -4.60 10.48 -12.22 -0.13 -4.73 16 14 C 0.18 0.97 11.27 -17.06 -0.19 0.78 16 15 C -0.22 -0.85 10.05 -39.78 -0.40 -1.25 16 16 C 0.16 1.04 11.30 -16.39 -0.19 0.86 16 17 N -0.31 -3.40 3.90 -12.20 -0.05 -3.45 16 18 N -0.28 -3.66 12.34 33.23 0.41 -3.25 16 19 C -0.16 -3.09 6.77 -24.58 -0.17 -3.26 16 20 C 0.17 4.20 5.41 -2.53 -0.01 4.19 16 21 N -0.59 -14.66 3.13 -162.57 -0.51 -15.17 16 22 C -0.23 -6.12 9.75 -15.06 -0.15 -6.27 16 23 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 24 C 0.00 -0.11 5.47 -17.43 -0.10 -0.20 16 25 N -0.92 -26.55 10.57 55.49 0.59 -25.96 16 26 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.75 7.40 -51.92 -0.38 0.36 16 33 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 34 H 0.06 1.31 7.90 -51.93 -0.41 0.90 16 35 H 0.40 5.80 8.05 -40.82 -0.33 5.47 16 36 H 0.17 2.23 8.06 -52.48 -0.42 1.81 16 37 H 0.18 0.25 8.06 -52.49 -0.42 -0.17 16 38 H 0.17 -0.04 8.06 -52.48 -0.42 -0.47 16 39 H 0.18 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.07 1.99 6.93 -51.93 -0.36 1.63 16 43 H 0.03 0.76 8.06 -51.93 -0.42 0.35 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 368.39 15.07 5.55 5.55 Total: -1.00 -33.88 368.39 -9.00 -42.87 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.02 Total: 3.74 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -3.64 Total: 4.51 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 0.05 Total: -63.72 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.88 -9.00 -42.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087769897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.477 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds