Wall clock time and date at job start Tue Mar 31 2020 05:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47402 * 274.97836 * 3 2 1 5 5 H 1.48500 * 109.47091 * 34.98164 * 3 2 1 6 6 H 1.48502 * 109.47027 * 154.98269 * 3 2 1 7 7 C 1.38818 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00126 * 155.11387 * 7 2 1 9 9 N 1.36932 * 119.99780 * 335.11659 * 7 2 1 10 10 C 1.44324 * 116.35624 * 331.74763 * 9 7 2 11 11 C 1.51612 * 113.11684 * 187.23882 * 10 9 7 12 12 C 1.52896 * 111.54723 * 320.92385 * 11 10 9 13 13 H 1.08991 * 112.87944 * 294.19941 * 12 11 10 14 14 C 1.56220 * 106.66715 * 168.35380 * 12 11 10 15 15 N 1.47763 * 103.99475 * 286.50229 * 14 12 11 16 16 C 1.34773 * 125.81569 * 154.03811 * 15 14 12 17 17 O 1.21712 * 120.00297 * 359.72443 * 16 15 14 18 18 C 1.46602 * 119.99837 * 179.71732 * 16 15 14 19 19 C 1.41151 * 126.56284 * 359.97438 * 18 16 15 20 20 N 1.30524 * 108.27680 * 180.02562 * 19 18 16 21 21 N 1.39998 * 109.36706 * 359.77058 * 20 19 18 22 22 C 1.38454 * 143.84572 * 179.39213 * 21 20 19 23 23 C 1.33068 * 108.41908 * 180.60777 * 22 21 20 24 24 N 1.38055 * 108.14050 * 0.23143 * 23 22 21 25 25 H 0.96997 * 126.16758 * 179.97438 * 24 23 22 26 26 C 1.35008 * 108.27396 * 0.37887 * 21 20 19 27 27 C 1.47619 * 108.36251 * 333.78251 * 15 14 12 28 28 C 1.53560 * 106.34277 * 0.86894 * 27 15 14 29 29 H 1.08993 * 108.71769 * 269.69125 * 28 27 15 30 30 C 1.43995 * 116.35355 * 151.74646 * 9 7 2 31 31 H 0.97003 * 119.99626 * 359.97438 * 1 2 3 32 32 H 1.09007 * 108.75448 * 66.30346 * 10 9 7 33 33 H 1.09000 * 108.75324 * 308.17979 * 10 9 7 34 34 H 1.08994 * 109.06309 * 200.38891 * 11 10 9 35 35 H 1.09002 * 109.05937 * 81.45944 * 11 10 9 36 36 H 1.09003 * 110.63259 * 167.85790 * 14 12 11 37 37 H 1.08991 * 110.49267 * 45.08856 * 14 12 11 38 38 H 1.08005 * 125.86551 * 359.97438 * 19 18 16 39 39 H 1.08002 * 125.78690 * 0.88034 * 22 21 20 40 40 H 1.08007 * 125.93402 * 180.26128 * 23 22 21 41 41 H 1.09000 * 110.08025 * 120.09711 * 27 15 14 42 42 H 1.09004 * 110.07573 * 241.59291 * 27 15 14 43 43 H 1.08999 * 108.16077 * 60.79813 * 30 9 7 44 44 H 1.08996 * 108.15652 * 304.23300 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3926 2.1072 -1.3948 5 1 1.5044 2.6200 0.8027 6 1 3.5965 1.4120 0.5921 7 6 2.0103 -1.2022 -0.0005 8 1 3.0150 -1.2455 -0.3941 9 7 1.4209 -2.3332 0.4979 10 6 0.4275 -2.1379 1.5265 11 6 -0.0499 -3.4362 2.1472 12 6 -0.1976 -4.5390 1.0985 13 1 -0.9840 -4.3313 0.3730 14 6 -0.3945 -5.8772 1.8802 15 7 0.9472 -6.1745 2.4232 16 6 1.2078 -6.9045 3.5258 17 8 0.2921 -7.3804 4.1710 18 6 2.5942 -7.1255 3.9478 19 6 3.7554 -6.6422 3.3070 20 7 4.7953 -7.0498 3.9824 21 7 4.3683 -7.8028 5.0827 22 6 4.8050 -8.5273 6.1788 23 6 3.7403 -9.0053 6.8180 24 7 2.6109 -8.5975 6.1368 25 1 1.6933 -8.8006 6.3766 26 6 3.0194 -7.8556 5.0617 27 6 1.9537 -5.5409 1.5488 28 6 1.1713 -4.8146 0.4450 29 1 1.0284 -5.4993 -0.3908 30 6 1.8618 -3.5840 -0.0629 31 1 -0.4850 0.8401 0.0004 32 1 -0.4288 -1.6211 1.0931 33 1 0.8527 -1.5105 2.3098 34 1 -1.0146 -3.2684 2.6258 35 1 0.6694 -3.7559 2.9012 36 1 -0.7182 -6.6711 1.2071 37 1 -1.1128 -5.7445 2.6890 38 1 3.7794 -6.0394 2.4112 39 1 5.8349 -8.6752 6.4684 40 1 3.7568 -9.6074 7.7146 41 1 2.5478 -4.8264 2.1186 42 1 2.6012 -6.3010 1.1116 43 1 2.9288 -3.6875 0.1344 44 1 1.7245 -3.5391 -1.1432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088182999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:26 Heat of formation + Delta-G solvation = 145.588755 kcal Electronic energy + Delta-G solvation = -28562.710692 eV Core-core repulsion = 24712.630441 eV Total energy + Delta-G solvation = -3850.080251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.27642 -40.23273 -38.42659 -37.77818 -35.51332 -33.02519 -32.40443 -31.49975 -30.33668 -29.82212 -28.98652 -27.49608 -25.61087 -23.88255 -22.81225 -22.57889 -21.83562 -21.38569 -21.14930 -19.66789 -17.85751 -17.72183 -17.03732 -16.45236 -16.41863 -15.68071 -15.62853 -15.16043 -14.93466 -14.80165 -14.17706 -14.01944 -13.86556 -13.65790 -13.51999 -13.01937 -12.94381 -12.82662 -12.56061 -12.26346 -12.07053 -11.69373 -11.19563 -11.09882 -11.05438 -10.76592 -10.70541 -10.46053 -10.23604 -10.14396 -9.80446 -9.66336 -9.54187 -9.50186 -9.36389 -8.48836 -8.38599 -7.78462 -6.56065 -5.59239 -3.24464 1.37421 1.67611 1.81944 2.28559 2.57452 3.21247 3.40010 3.48094 3.52198 3.58800 4.14640 4.48172 4.52886 4.63434 4.76083 4.83612 4.98993 5.08196 5.15762 5.30388 5.37260 5.40263 5.45906 5.48635 5.63218 5.64876 5.77195 5.92216 6.01815 6.07189 6.22239 6.29009 6.39018 6.46540 6.62144 6.62858 6.67972 6.76034 6.83871 6.84663 6.92048 7.35946 7.54806 7.78477 7.85321 7.97362 8.45031 8.57359 9.32792 10.02998 10.32761 11.26467 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.003151 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.272449 B = 8882.660936 C = 9663.449657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.007 3.993 3 Si 0.896 3.104 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.268 4.268 8 H 0.065 0.935 9 N -0.585 5.585 10 C 0.156 3.844 11 C -0.120 4.120 12 C -0.082 4.082 13 H 0.101 0.899 14 C 0.111 3.889 15 N -0.610 5.610 16 C 0.618 3.382 17 O -0.576 6.576 18 C -0.329 4.329 19 C 0.117 3.883 20 N -0.301 5.301 21 N -0.309 5.309 22 C 0.003 3.997 23 C 0.025 3.975 24 N -0.574 5.574 25 H 0.444 0.556 26 C 0.319 3.681 27 C 0.102 3.898 28 C -0.100 4.100 29 H 0.074 0.926 30 C 0.175 3.825 31 H 0.252 0.748 32 H 0.080 0.920 33 H 0.016 0.984 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.211 0.789 39 H 0.192 0.808 40 H 0.205 0.795 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.014 0.986 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.946 -19.248 11.152 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.193 4.193 3 Si 0.725 3.275 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.398 4.398 8 H 0.082 0.918 9 N -0.309 5.309 10 C 0.031 3.969 11 C -0.158 4.158 12 C -0.101 4.101 13 H 0.119 0.881 14 C -0.011 4.011 15 N -0.343 5.343 16 C 0.411 3.589 17 O -0.458 6.458 18 C -0.349 4.349 19 C -0.066 4.066 20 N -0.122 5.122 21 N -0.078 5.078 22 C -0.123 4.123 23 C -0.103 4.103 24 N -0.186 5.186 25 H 0.285 0.715 26 C 0.083 3.917 27 C -0.020 4.020 28 C -0.119 4.119 29 H 0.093 0.907 30 C 0.049 3.951 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.227 0.773 39 H 0.209 0.791 40 H 0.221 0.779 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.032 0.968 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 5.734 -19.458 11.657 23.396 hybrid contribution -0.705 0.810 0.155 1.085 sum 5.029 -18.648 11.812 22.639 Atomic orbital electron populations 1.70004 1.05517 1.25323 1.52271 1.24970 0.94922 0.98509 1.00916 0.86389 0.79602 0.83903 0.77568 1.21514 1.21595 1.20410 1.19105 0.96167 0.86658 1.37896 0.91756 1.42664 1.46360 1.01082 1.40800 1.20228 0.94879 0.92190 0.89618 1.21579 1.00458 0.96602 0.97194 1.22277 0.97109 0.93390 0.97325 0.88089 1.22655 0.84361 0.96627 0.97491 1.48282 1.08460 1.51697 1.25811 1.16439 0.86714 0.77063 0.78723 1.90719 1.46864 1.52926 1.55265 1.18381 0.94472 1.19935 1.02075 1.24792 0.88063 0.95271 0.98438 1.77554 1.21274 1.16376 0.97003 1.47115 1.04968 1.36134 1.19569 1.21594 1.00900 1.01438 0.88371 1.22269 0.82754 1.04530 1.00764 1.41565 1.10172 1.45258 1.21629 0.71459 1.19179 0.85527 0.95690 0.91291 1.22473 0.91781 0.95993 0.91788 1.21531 0.95717 0.98058 0.96607 0.90750 1.19364 0.95402 0.84582 0.95771 0.93754 0.90308 0.96620 0.92626 0.93250 0.91876 0.90514 0.77268 0.79082 0.77868 0.90449 0.91236 0.96802 0.95786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 10.96 55.49 0.61 -24.76 16 2 C 0.01 0.18 4.94 -17.43 -0.09 0.10 16 3 Si 0.90 21.61 29.62 -169.99 -5.04 16.58 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.27 -7.28 9.25 -15.06 -0.14 -7.42 16 8 H 0.06 1.72 7.94 -52.49 -0.42 1.31 16 9 N -0.58 -14.23 3.22 -179.57 -0.58 -14.81 16 10 C 0.16 3.68 5.16 -5.90 -0.03 3.65 16 11 C -0.12 -2.27 4.98 -27.49 -0.14 -2.41 16 12 C -0.08 -1.34 3.78 -88.34 -0.33 -1.67 16 13 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 14 C 0.11 1.65 6.25 -1.62 -0.01 1.64 16 15 N -0.61 -9.39 2.80 -170.96 -0.48 -9.87 16 16 C 0.62 10.25 7.83 -12.89 -0.10 10.15 16 17 O -0.58 -10.74 17.16 5.18 0.09 -10.65 16 18 C -0.33 -4.94 6.12 -104.83 -0.64 -5.58 16 19 C 0.12 1.64 10.46 -17.00 -0.18 1.46 16 20 N -0.30 -4.39 12.61 30.85 0.39 -4.00 16 21 N -0.31 -3.94 4.67 -11.88 -0.06 -3.99 16 22 C 0.00 0.03 11.91 -16.36 -0.19 -0.17 16 23 C 0.02 0.14 11.92 -16.54 -0.20 -0.06 16 24 N -0.57 -5.18 6.24 -11.98 -0.07 -5.25 16 25 H 0.44 3.31 8.96 -40.82 -0.37 2.95 16 26 C 0.32 4.23 8.38 -154.53 -1.29 2.94 16 27 C 0.10 1.45 3.64 -3.14 -0.01 1.44 16 28 C -0.10 -1.58 2.68 -91.23 -0.24 -1.82 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 C 0.18 3.47 5.67 -6.88 -0.04 3.44 16 31 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.08 2.12 5.75 -51.93 -0.30 1.82 16 33 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.94 6.77 -51.93 -0.35 0.59 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.20 7.93 -51.93 -0.41 0.78 16 38 H 0.21 2.54 4.46 -52.48 -0.23 2.30 16 39 H 0.19 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.20 0.10 8.06 -52.48 -0.42 -0.32 16 41 H 0.08 1.17 6.59 -51.93 -0.34 0.83 16 42 H 0.07 0.83 6.99 -51.93 -0.36 0.46 16 43 H 0.01 0.27 7.78 -51.93 -0.40 -0.13 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 347.99 15.07 5.24 5.24 Total: -1.00 -35.42 347.99 -9.23 -44.66 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.70 Total: 1.16 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -3.64 Total: 5.69 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -0.19 Total: -62.68 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.04 Total: 16.58 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.42 -9.23 -44.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088182999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.247 kcal (2) G-P(sol) polarization free energy of solvation -35.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds