Wall clock time and date at job start Tue Mar 31 2020 05:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47402 * 274.97836 * 3 2 1 5 5 H 1.48500 * 109.47091 * 34.98164 * 3 2 1 6 6 H 1.48502 * 109.47027 * 154.98269 * 3 2 1 7 7 C 1.38818 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00126 * 155.11387 * 7 2 1 9 9 N 1.36932 * 119.99780 * 335.11659 * 7 2 1 10 10 C 1.44324 * 116.35624 * 331.74763 * 9 7 2 11 11 C 1.51612 * 113.11684 * 187.23882 * 10 9 7 12 12 C 1.52896 * 111.54723 * 320.92385 * 11 10 9 13 13 H 1.08991 * 112.87944 * 294.19941 * 12 11 10 14 14 C 1.56220 * 106.66715 * 168.35380 * 12 11 10 15 15 N 1.47763 * 103.99475 * 286.50229 * 14 12 11 16 16 C 1.34773 * 125.81569 * 154.03811 * 15 14 12 17 17 O 1.21712 * 120.00297 * 359.72443 * 16 15 14 18 18 C 1.46602 * 119.99837 * 179.71732 * 16 15 14 19 19 C 1.41151 * 126.56284 * 359.97438 * 18 16 15 20 20 N 1.30524 * 108.27680 * 180.02562 * 19 18 16 21 21 N 1.39998 * 109.36706 * 359.77058 * 20 19 18 22 22 C 1.38454 * 143.84572 * 179.39213 * 21 20 19 23 23 C 1.33068 * 108.41908 * 180.60777 * 22 21 20 24 24 N 1.38055 * 108.14050 * 0.23143 * 23 22 21 25 25 H 0.96997 * 126.16758 * 179.97438 * 24 23 22 26 26 C 1.35008 * 108.27396 * 0.37887 * 21 20 19 27 27 C 1.47619 * 108.36251 * 333.78251 * 15 14 12 28 28 C 1.53560 * 106.34277 * 0.86894 * 27 15 14 29 29 H 1.08993 * 108.71769 * 269.69125 * 28 27 15 30 30 C 1.43995 * 116.35355 * 151.74646 * 9 7 2 31 31 H 0.97003 * 119.99626 * 359.97438 * 1 2 3 32 32 H 1.09007 * 108.75448 * 66.30346 * 10 9 7 33 33 H 1.09000 * 108.75324 * 308.17979 * 10 9 7 34 34 H 1.08994 * 109.06309 * 200.38891 * 11 10 9 35 35 H 1.09002 * 109.05937 * 81.45944 * 11 10 9 36 36 H 1.09003 * 110.63259 * 167.85790 * 14 12 11 37 37 H 1.08991 * 110.49267 * 45.08856 * 14 12 11 38 38 H 1.08005 * 125.86551 * 359.97438 * 19 18 16 39 39 H 1.08002 * 125.78690 * 0.88034 * 22 21 20 40 40 H 1.08007 * 125.93402 * 180.26128 * 23 22 21 41 41 H 1.09000 * 110.08025 * 120.09711 * 27 15 14 42 42 H 1.09004 * 110.07573 * 241.59291 * 27 15 14 43 43 H 1.08999 * 108.16077 * 60.79813 * 30 9 7 44 44 H 1.08996 * 108.15652 * 304.23300 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3926 2.1072 -1.3948 5 1 1.5044 2.6200 0.8027 6 1 3.5965 1.4120 0.5921 7 6 2.0103 -1.2022 -0.0005 8 1 3.0150 -1.2455 -0.3941 9 7 1.4209 -2.3332 0.4979 10 6 0.4275 -2.1379 1.5265 11 6 -0.0499 -3.4362 2.1472 12 6 -0.1976 -4.5390 1.0985 13 1 -0.9840 -4.3313 0.3730 14 6 -0.3945 -5.8772 1.8802 15 7 0.9472 -6.1745 2.4232 16 6 1.2078 -6.9045 3.5258 17 8 0.2921 -7.3804 4.1710 18 6 2.5942 -7.1255 3.9478 19 6 3.7554 -6.6422 3.3070 20 7 4.7953 -7.0498 3.9824 21 7 4.3683 -7.8028 5.0827 22 6 4.8050 -8.5273 6.1788 23 6 3.7403 -9.0053 6.8180 24 7 2.6109 -8.5975 6.1368 25 1 1.6933 -8.8006 6.3766 26 6 3.0194 -7.8556 5.0617 27 6 1.9537 -5.5409 1.5488 28 6 1.1713 -4.8146 0.4450 29 1 1.0284 -5.4993 -0.3908 30 6 1.8618 -3.5840 -0.0629 31 1 -0.4850 0.8401 0.0004 32 1 -0.4288 -1.6211 1.0931 33 1 0.8527 -1.5105 2.3098 34 1 -1.0146 -3.2684 2.6258 35 1 0.6694 -3.7559 2.9012 36 1 -0.7182 -6.6711 1.2071 37 1 -1.1128 -5.7445 2.6890 38 1 3.7794 -6.0394 2.4112 39 1 5.8349 -8.6752 6.4684 40 1 3.7568 -9.6074 7.7146 41 1 2.5478 -4.8264 2.1186 42 1 2.6012 -6.3010 1.1116 43 1 2.9288 -3.6875 0.1344 44 1 1.7245 -3.5391 -1.1432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088182999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:24 Heat of formation + Delta-G solvation = 122.216983 kcal Electronic energy + Delta-G solvation = -28563.724168 eV Core-core repulsion = 24712.630441 eV Total energy + Delta-G solvation = -3851.093727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.09315 -41.51462 -39.57694 -38.87953 -37.18475 -34.24569 -33.71386 -33.02945 -32.01278 -30.68021 -30.12853 -28.71756 -27.19670 -25.47965 -24.04244 -23.62943 -23.14712 -22.60951 -22.08784 -20.72462 -19.38023 -18.85387 -18.71982 -17.48509 -17.37610 -16.96103 -16.80663 -16.46755 -16.25848 -15.88184 -15.72857 -15.41923 -15.22186 -14.88269 -14.55104 -14.42080 -14.32853 -13.97425 -13.71266 -13.61383 -13.42116 -13.23140 -12.93945 -12.83773 -12.49187 -12.18952 -12.10777 -12.03009 -11.71469 -11.60972 -11.45258 -11.23087 -11.14167 -10.89682 -10.49577 -10.20396 -9.62451 -8.66196 -8.60635 -7.65701 -5.36009 0.63261 0.75054 1.03675 1.43873 1.46230 1.49526 1.59354 1.92367 2.05532 2.43603 2.53919 3.25101 3.26776 3.48499 3.58327 3.77045 3.79946 3.89465 4.05432 4.12760 4.19293 4.26501 4.35519 4.46931 4.53781 4.56146 4.67525 4.70135 4.73979 4.84540 4.86766 4.94400 5.05287 5.09899 5.13584 5.25189 5.32576 5.38552 5.44990 5.48978 5.73035 5.81446 5.97210 6.21577 6.48350 6.56830 6.65184 7.23877 7.25779 8.09670 8.28667 9.15404 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.003151 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.272449 B = 8882.660936 C = 9663.449657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.043 4.043 3 Si 0.956 3.044 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.282 4.282 8 H 0.064 0.936 9 N -0.596 5.596 10 C 0.166 3.834 11 C -0.108 4.108 12 C -0.079 4.079 13 H 0.102 0.898 14 C 0.120 3.880 15 N -0.612 5.612 16 C 0.615 3.385 17 O -0.605 6.605 18 C -0.358 4.358 19 C 0.116 3.884 20 N -0.330 5.330 21 N -0.312 5.312 22 C -0.029 4.029 23 C 0.060 3.940 24 N -0.565 5.565 25 H 0.450 0.550 26 C 0.295 3.705 27 C 0.110 3.890 28 C -0.095 4.095 29 H 0.104 0.896 30 C 0.171 3.829 31 H 0.249 0.751 32 H 0.048 0.952 33 H -0.017 1.017 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.220 0.780 39 H 0.222 0.778 40 H 0.262 0.738 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.025 0.975 44 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.064 -21.685 12.375 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.240 4.240 3 Si 0.784 3.216 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.412 4.412 8 H 0.082 0.918 9 N -0.320 5.320 10 C 0.040 3.960 11 C -0.146 4.146 12 C -0.098 4.098 13 H 0.120 0.880 14 C -0.002 4.002 15 N -0.343 5.343 16 C 0.408 3.592 17 O -0.490 6.490 18 C -0.378 4.378 19 C -0.066 4.066 20 N -0.152 5.152 21 N -0.082 5.082 22 C -0.153 4.153 23 C -0.067 4.067 24 N -0.178 5.178 25 H 0.294 0.706 26 C 0.056 3.944 27 C -0.013 4.013 28 C -0.114 4.114 29 H 0.123 0.877 30 C 0.046 3.954 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.001 0.999 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.236 0.764 39 H 0.238 0.762 40 H 0.278 0.722 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.042 0.958 44 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 6.881 -21.917 12.873 26.333 hybrid contribution -0.990 1.485 -0.099 1.787 sum 5.891 -20.432 12.774 24.806 Atomic orbital electron populations 1.70152 1.06705 1.25613 1.53575 1.25677 0.95656 1.01351 1.01346 0.85450 0.78445 0.80213 0.77503 1.20963 1.21987 1.19867 1.19430 0.96371 0.88083 1.37365 0.91821 1.42893 1.46109 1.02127 1.40916 1.19948 0.93394 0.94028 0.88581 1.21408 1.00390 0.95203 0.97620 1.22215 0.97682 0.93156 0.96764 0.87972 1.22583 0.84216 0.96116 0.97334 1.48298 1.08754 1.51475 1.25817 1.16684 0.87152 0.76780 0.78536 1.90682 1.47767 1.54343 1.56159 1.18366 0.93807 1.21917 1.03714 1.24900 0.87745 0.95218 0.98743 1.77406 1.22005 1.17535 0.98210 1.47365 1.05039 1.35955 1.19875 1.22501 1.03330 1.01876 0.87600 1.23312 0.80498 1.02222 1.00685 1.41837 1.11605 1.43860 1.20486 0.70638 1.19338 0.86079 0.96659 0.92278 1.22441 0.91471 0.96396 0.90944 1.21457 0.95018 0.96793 0.98148 0.87748 1.19490 0.96290 0.84453 0.95158 0.94156 0.93462 0.99903 0.91930 0.93528 0.89573 0.91293 0.76405 0.76152 0.72196 0.91638 0.88254 0.95765 0.96663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.91 10.96 21.65 0.24 -53.67 16 2 C -0.04 -2.43 4.94 84.86 0.42 -2.01 16 3 Si 0.96 45.26 29.62 68.60 2.03 47.30 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.28 -15.57 9.25 84.04 0.78 -14.79 16 8 H 0.06 3.45 7.94 -2.91 -0.02 3.43 16 9 N -0.60 -29.55 3.22 -722.04 -2.33 -31.88 16 10 C 0.17 8.14 5.16 86.33 0.45 8.58 16 11 C -0.11 -4.14 4.98 30.10 0.15 -3.99 16 12 C -0.08 -2.51 3.78 -9.31 -0.04 -2.54 16 13 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 14 C 0.12 3.38 6.25 87.26 0.55 3.93 16 15 N -0.61 -18.11 2.80 -813.01 -2.28 -20.39 16 16 C 0.61 20.04 7.83 86.43 0.68 20.72 16 17 O -0.60 -22.34 17.16 -4.39 -0.08 -22.41 16 18 C -0.36 -10.61 6.12 -20.00 -0.12 -10.73 16 19 C 0.12 3.22 10.46 85.60 0.90 4.11 16 20 N -0.33 -9.48 12.61 -56.33 -0.71 -10.19 16 21 N -0.31 -7.54 4.67 -191.51 -0.89 -8.44 16 22 C -0.03 -0.38 11.91 82.49 0.98 0.61 16 23 C 0.06 0.42 11.92 82.55 0.98 1.40 16 24 N -0.57 -8.79 6.24 -191.83 -1.20 -9.99 16 25 H 0.45 5.70 8.96 -92.71 -0.83 4.87 16 26 C 0.30 7.49 8.38 133.15 1.12 8.60 16 27 C 0.11 2.95 3.64 86.35 0.31 3.27 16 28 C -0.10 -2.85 2.68 -11.19 -0.03 -2.88 16 29 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 30 C 0.17 6.72 5.67 85.87 0.49 7.20 16 31 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.05 2.67 5.75 -2.38 -0.01 2.66 16 33 H -0.02 -0.93 8.12 -2.39 -0.02 -0.95 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.05 1.80 6.77 -2.39 -0.02 1.79 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.07 2.08 7.93 -2.39 -0.02 2.06 16 38 H 0.22 5.17 4.46 -2.91 -0.01 5.16 16 39 H 0.22 1.22 8.06 -2.91 -0.02 1.19 16 40 H 0.26 -1.42 8.06 -2.91 -0.02 -1.44 16 41 H 0.07 1.95 6.59 -2.39 -0.02 1.93 16 42 H 0.10 2.12 6.99 -2.39 -0.02 2.10 16 43 H 0.02 0.92 7.78 -2.39 -0.02 0.90 16 44 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -80.47 347.99 2.61 -77.86 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.22 Total: 10.34 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 7.60 Total: 21.48 kcal Atomic # 7 Polarization: -127.39 SS G_CDS: -7.17 Total: -134.56 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.08 Total: -22.41 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.30 kcal Total: -80.47 2.61 -77.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088182999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.076 kcal (2) G-P(sol) polarization free energy of solvation -80.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds