Wall clock time and date at job start Tue Mar 31 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30277 * 124.97190 * 2 1 4 4 C 1.34663 * 109.66554 * 179.71355 * 3 2 1 5 5 C 1.40828 * 107.25938 * 0.42082 * 4 3 2 6 6 N 1.32108 * 120.46169 * 179.77922 * 5 4 3 7 7 C 1.31729 * 121.95088 * 359.72746 * 6 5 4 8 8 C 1.38338 * 121.54322 * 359.97438 * 7 6 5 9 9 C 1.39632 * 119.37654 * 359.97438 * 8 7 6 10 10 C 1.47769 * 121.07379 * 180.02562 * 9 8 7 11 11 O 1.21559 * 120.00346 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99762 * 0.02562 * 10 9 8 13 13 C 1.46498 * 119.99887 * 179.97438 * 12 10 9 14 14 H 1.08998 * 110.78284 * 323.22518 * 13 12 10 15 15 C 1.55155 * 110.71735 * 86.45687 * 13 12 10 16 16 C 1.54919 * 101.58279 * 153.86447 * 15 13 12 17 17 N 1.47424 * 104.83064 * 322.99066 * 16 15 13 18 18 C 1.36932 * 125.64892 * 204.08954 * 17 16 15 19 19 H 1.07997 * 120.00051 * 169.85923 * 18 17 16 20 20 C 1.38813 * 119.99979 * 349.85920 * 18 17 16 21 21 N 1.31619 * 120.00080 * 350.47282 * 20 18 17 22 22 Si 1.86796 * 120.00228 * 170.47168 * 20 18 17 23 23 H 1.48495 * 109.47358 * 94.13598 * 22 20 18 24 24 H 1.48506 * 109.47418 * 214.13802 * 22 20 18 25 25 H 1.48506 * 109.46851 * 334.13534 * 22 20 18 26 26 C 1.47026 * 108.70273 * 24.35391 * 17 16 15 27 27 H 1.08989 * 109.88420 * 239.29470 * 26 17 16 28 28 C 1.53004 * 109.88163 * 118.12706 * 26 17 16 29 29 N 1.35989 * 124.96697 * 179.97438 * 2 1 3 30 30 H 0.96999 * 126.35694 * 0.04600 * 29 2 1 31 31 H 1.09004 * 109.46682 * 270.02481 * 1 2 3 32 32 H 1.08997 * 109.47001 * 30.01465 * 1 2 3 33 33 H 1.08998 * 109.47079 * 150.02432 * 1 2 3 34 34 H 1.08001 * 119.22995 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.30472 * 179.97438 * 8 7 6 36 36 H 0.96998 * 120.00160 * 0.02562 * 12 10 9 37 37 H 1.09000 * 111.00545 * 35.79304 * 15 13 12 38 38 H 1.08999 * 111.04191 * 271.95660 * 15 13 12 39 39 H 1.09002 * 110.36869 * 204.15107 * 16 15 13 40 40 H 1.09000 * 110.36265 * 81.83056 * 16 15 13 41 41 H 0.96994 * 120.00488 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.46760 * 61.45010 * 28 26 17 43 43 H 1.08988 * 109.47448 * 181.45291 * 28 26 17 44 44 H 1.09002 * 109.47123 * 301.46103 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2538 1.0675 0.0000 4 6 3.5526 0.7121 0.0063 5 6 3.6007 -0.6954 0.0007 6 7 4.7616 -1.3259 0.0007 7 6 5.9076 -0.6764 0.0005 8 6 5.9559 0.7061 -0.0002 9 6 4.7638 1.4332 -0.0012 10 6 4.7716 2.9108 -0.0025 11 8 3.7222 3.5243 -0.0030 12 7 5.9424 3.5785 -0.0032 13 6 5.9502 5.0434 -0.0051 14 1 5.1361 5.4338 -0.6157 15 6 5.8633 5.5946 1.4427 16 6 6.5497 6.9752 1.2916 17 7 7.6439 6.7494 0.3297 18 6 8.7823 7.5030 0.2247 19 1 9.5983 7.1648 -0.3968 20 6 8.8877 8.7015 0.9170 21 7 7.8334 9.2074 1.5211 22 14 10.5256 9.5965 0.9912 23 1 10.5874 10.6067 -0.0955 24 1 10.6602 10.2745 2.3055 25 1 11.6314 8.6197 0.8225 26 6 7.3072 5.5849 -0.5024 27 1 8.0731 4.8173 -0.3929 28 6 7.1960 6.0078 -1.9686 29 7 2.2864 -1.1144 0.0005 30 1 1.9758 -2.0333 0.0003 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8898 -0.5140 33 1 -0.3633 -0.8902 -0.5134 34 1 6.8311 -1.2363 0.0000 35 1 6.9068 1.2182 0.0001 36 1 6.7799 3.0890 -0.0032 37 1 6.4132 4.9588 2.1365 38 1 4.8257 5.7065 1.7572 39 1 6.9495 7.3070 2.2499 40 1 5.8449 7.7083 0.8994 41 1 7.9069 10.0451 2.0046 42 1 8.1550 6.3998 -2.3073 43 1 6.9211 5.1454 -2.5756 44 1 6.4327 6.7797 -2.0672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088762943.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:58 Heat of formation + Delta-G solvation = 81.321344 kcal Electronic energy + Delta-G solvation = -27615.037528 eV Core-core repulsion = 23762.170434 eV Total energy + Delta-G solvation = -3852.867095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.70745 -39.77314 -38.51063 -37.42434 -34.07279 -33.87257 -32.24937 -31.81542 -31.32264 -30.34026 -28.65572 -28.32589 -25.28042 -23.99616 -23.82927 -23.12029 -21.43530 -20.91460 -20.14391 -19.85062 -18.41168 -17.77365 -17.27765 -16.70281 -16.21730 -15.83594 -15.30502 -14.90274 -14.64635 -14.53636 -14.10147 -13.86893 -13.79527 -13.73689 -13.35544 -13.16526 -12.75473 -12.62230 -12.40748 -12.07832 -12.04741 -11.52776 -11.33616 -11.12137 -11.08377 -10.90810 -10.75413 -10.52733 -10.37578 -10.05135 -9.95188 -9.81050 -9.62223 -9.30930 -9.19635 -8.71897 -8.61790 -8.52073 -6.82250 -5.73359 -3.07023 0.16584 0.86763 2.15841 2.45203 2.96058 3.20188 3.40180 3.45977 3.47818 3.67078 3.74114 4.10240 4.34857 4.47884 4.52483 4.59058 4.77752 4.89125 5.04215 5.22805 5.29246 5.40814 5.44775 5.50313 5.55153 5.61696 5.63022 5.75962 5.86078 6.15407 6.24030 6.27032 6.34726 6.38242 6.55111 6.64879 6.74085 6.76678 6.91922 7.14984 7.49855 7.52383 7.53562 7.61167 7.73287 7.80068 8.26135 8.42317 9.19311 9.81395 10.48433 11.39248 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.002550 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.391521 B =10977.930401 C =11577.254272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.294 3.706 3 N -0.456 5.456 4 C 0.057 3.943 5 C 0.232 3.768 6 N -0.470 5.470 7 C 0.131 3.869 8 C -0.149 4.149 9 C -0.030 4.030 10 C 0.550 3.450 11 O -0.503 6.503 12 N -0.710 5.710 13 C 0.138 3.862 14 H 0.094 0.906 15 C -0.154 4.154 16 C 0.174 3.826 17 N -0.594 5.594 18 C -0.227 4.227 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.156 3.844 27 H 0.036 0.964 28 C -0.155 4.155 29 N -0.587 5.587 30 H 0.427 0.573 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.173 0.827 35 H 0.151 0.849 36 H 0.396 0.604 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.029 0.971 41 H 0.253 0.747 42 H 0.055 0.945 43 H 0.037 0.963 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.078 -23.649 -3.143 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.028 3.972 3 N -0.176 5.176 4 C -0.067 4.067 5 C -0.005 4.005 6 N -0.184 5.184 7 C -0.035 4.035 8 C -0.172 4.172 9 C -0.043 4.043 10 C 0.335 3.665 11 O -0.377 6.377 12 N -0.362 5.362 13 C 0.034 3.966 14 H 0.112 0.888 15 C -0.194 4.194 16 C 0.049 3.951 17 N -0.319 5.319 18 C -0.355 4.355 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.563 5.563 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.048 3.952 27 H 0.053 0.947 28 C -0.214 4.214 29 N -0.202 5.202 30 H 0.267 0.733 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.190 0.810 35 H 0.168 0.832 36 H 0.231 0.769 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.094 -22.968 -3.052 25.689 hybrid contribution 1.497 -0.152 0.020 1.505 sum -9.597 -23.121 -3.032 25.216 Atomic orbital electron populations 1.20448 0.83296 1.05124 1.04699 1.23997 0.96122 0.80176 0.96949 1.70371 1.00440 1.26631 1.20138 1.19243 0.92354 0.90874 1.04193 1.18894 0.86207 0.90903 1.04513 1.66187 0.96074 1.41540 1.14552 1.22499 0.94203 0.91311 0.95453 1.22239 0.98028 0.95593 1.01374 1.19788 0.90748 0.94127 0.99656 1.17891 0.84505 0.85991 0.78121 1.90849 1.31050 1.68551 1.47272 1.45971 1.07706 1.07885 1.74616 1.22139 0.99171 0.77133 0.98195 0.88840 1.23398 1.00682 1.00202 0.95116 1.21413 0.88705 0.89884 0.95094 1.44506 1.20222 1.31254 1.35917 1.18950 0.91213 0.99779 1.25567 0.90617 1.24831 0.97448 0.96820 1.01205 1.69957 1.27192 1.20362 1.38745 0.86147 0.83157 0.79584 0.77094 1.21658 1.21662 1.20633 1.21011 0.92054 0.91327 0.90852 0.94669 1.22235 1.02024 0.99901 0.97282 1.42759 1.03576 1.10528 1.63372 0.73281 0.88869 0.87887 0.89901 0.80956 0.83162 0.76895 0.92013 0.91713 0.91029 0.95286 0.93670 0.92604 0.94430 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.51 36.01 0.38 -0.01 16 2 C 0.29 2.96 8.08 -154.73 -1.25 1.71 16 3 N -0.46 -6.83 10.63 -8.07 -0.09 -6.92 16 4 C 0.06 0.85 6.85 -84.61 -0.58 0.27 16 5 C 0.23 2.84 8.46 -155.65 -1.32 1.52 16 6 N -0.47 -5.29 10.35 -12.30 -0.13 -5.42 16 7 C 0.13 1.18 11.14 -17.56 -0.20 0.99 16 8 C -0.15 -1.48 9.60 -39.02 -0.37 -1.86 16 9 C -0.03 -0.42 5.93 -104.45 -0.62 -1.04 16 10 C 0.55 9.17 7.78 -12.36 -0.10 9.07 16 11 O -0.50 -10.38 15.92 5.31 0.08 -10.30 16 12 N -0.71 -10.76 5.16 -52.99 -0.27 -11.03 16 13 C 0.14 2.55 2.76 -66.09 -0.18 2.37 16 14 H 0.09 1.88 7.40 -51.93 -0.38 1.49 16 15 C -0.15 -3.09 6.77 -24.58 -0.17 -3.26 16 16 C 0.17 4.25 5.42 -2.52 -0.01 4.23 16 17 N -0.59 -14.71 3.13 -162.56 -0.51 -15.22 16 18 C -0.23 -6.14 9.83 -15.06 -0.15 -6.29 16 19 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 20 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 21 N -0.92 -26.75 10.69 55.49 0.59 -26.15 16 22 Si 0.91 21.82 29.56 -169.99 -5.03 16.80 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.16 3.10 3.48 -66.94 -0.23 2.87 16 27 H 0.04 0.67 7.69 -51.94 -0.40 0.27 16 28 C -0.15 -2.92 9.14 37.16 0.34 -2.58 16 29 N -0.59 -5.24 6.23 -9.43 -0.06 -5.30 16 30 H 0.43 2.18 8.96 -40.82 -0.37 1.82 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.15 1.04 6.53 -52.49 -0.34 0.69 16 36 H 0.40 4.76 6.46 -40.82 -0.26 4.50 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.07 1.92 6.94 -51.93 -0.36 1.56 16 40 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.05 1.08 8.02 -51.93 -0.42 0.67 16 43 H 0.04 0.60 8.14 -51.94 -0.42 0.18 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -36.82 365.44 -10.33 -47.15 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.88 Total: 3.17 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -4.55 Total: 7.72 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -0.46 Total: -70.04 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.82 -10.33 -47.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088762943.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.469 kcal (2) G-P(sol) polarization free energy of solvation -36.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds