Wall clock time and date at job start Tue Mar 31 2020 05:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39963 * 120.32206 * 2 1 4 4 N 1.31502 * 120.10779 * 180.02562 * 3 2 1 5 5 C 1.33383 * 120.85243 * 359.67289 * 4 3 2 6 6 C 1.40809 * 132.47687 * 179.64962 * 5 4 3 7 7 C 1.46577 * 126.53727 * 0.73725 * 6 5 4 8 8 O 1.21720 * 120.00460 * 359.71199 * 7 6 5 9 9 N 1.34779 * 119.99782 * 179.71151 * 7 6 5 10 10 C 1.46498 * 119.99910 * 180.02562 * 9 7 6 11 11 H 1.09005 * 110.78011 * 323.21238 * 10 9 7 12 12 C 1.55158 * 110.72351 * 86.45393 * 10 9 7 13 13 C 1.54909 * 101.61642 * 153.88368 * 12 10 9 14 14 N 1.47427 * 104.83281 * 322.96922 * 13 12 10 15 15 C 1.36930 * 125.64624 * 204.16403 * 14 13 12 16 16 H 1.08002 * 119.99784 * 179.97438 * 15 14 13 17 17 C 1.38820 * 120.00266 * 359.97438 * 15 14 13 18 18 N 1.31614 * 119.99878 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99929 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47563 * 59.99860 * 19 17 15 21 21 H 1.48495 * 109.47219 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47032 * 299.99836 * 19 17 15 23 23 C 1.47014 * 108.70101 * 24.13279 * 14 13 12 24 24 H 1.09004 * 109.88272 * 239.36515 * 23 14 13 25 25 C 1.53006 * 109.88374 * 118.35608 * 23 14 13 26 26 C 1.40644 * 106.91974 * 180.47331 * 6 5 4 27 27 N 1.30698 * 108.72767 * 0.24257 * 26 6 5 28 28 N 1.36590 * 120.79566 * 0.61604 * 5 4 3 29 29 C 1.35758 * 120.32402 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47035 * 270.01609 * 1 2 3 31 31 H 1.08996 * 109.47614 * 30.01802 * 1 2 3 32 32 H 1.09006 * 109.47156 * 150.01967 * 1 2 3 33 33 H 1.07998 * 119.94455 * 359.97438 * 3 2 1 34 34 H 0.97002 * 120.00249 * 0.02562 * 9 7 6 35 35 H 1.09002 * 111.00366 * 35.78886 * 12 10 9 36 36 H 1.09002 * 111.00429 * 271.97948 * 12 10 9 37 37 H 1.09001 * 110.36668 * 81.81066 * 13 12 10 38 38 H 1.09004 * 110.36307 * 204.13193 * 13 12 10 39 39 H 0.96997 * 119.99856 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.46974 * 61.44956 * 25 23 14 41 41 H 1.08997 * 109.47249 * 181.45250 * 25 23 14 42 42 H 1.08997 * 109.47061 * 301.45080 * 25 23 14 43 43 H 1.08001 * 125.63409 * 180.27012 * 26 6 5 44 44 H 1.07996 * 120.42259 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2082 0.0000 4 7 3.5286 1.2032 -0.0005 5 6 4.2083 0.0556 0.0055 6 6 5.5865 -0.2333 0.0002 7 6 6.6822 0.7403 0.0007 8 8 6.4371 1.9326 0.0010 9 7 7.9612 0.3153 0.0011 10 6 9.0564 1.2883 0.0022 11 1 8.8037 2.1557 -0.6077 12 6 9.4065 1.7192 1.4510 13 6 10.8923 2.1318 1.3033 14 7 11.4577 1.1684 0.3411 15 6 12.7792 0.8247 0.2390 16 1 13.0943 0.1051 -0.5022 17 6 13.7140 1.4010 1.0882 18 7 13.3301 2.2783 1.9911 19 14 15.5168 0.9326 0.9484 20 1 16.0117 1.2685 -0.4108 21 1 16.3029 1.6819 1.9611 22 1 15.6690 -0.5257 1.1841 23 6 10.3675 0.6375 -0.4901 24 1 10.3106 -0.4454 -0.3795 25 6 10.6086 0.9985 -1.9573 26 6 5.7110 -1.6342 0.0004 27 7 4.5152 -2.1618 0.0002 28 7 3.5553 -1.1440 -0.0003 29 6 2.1924 -1.1718 0.0005 30 1 -0.3633 0.0003 1.0276 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5136 33 1 1.6780 2.1460 -0.0004 34 1 8.1566 -0.6348 0.0005 35 1 9.2999 0.8841 2.1435 36 1 8.7955 2.5652 1.7656 37 1 10.9672 3.1466 0.9126 38 1 11.4045 2.0549 2.2624 39 1 13.9832 2.6807 2.5847 40 1 11.5415 0.5467 -2.2940 41 1 9.7839 0.6242 -2.5638 42 1 10.6720 2.0818 -2.0592 43 1 6.6410 -2.1832 0.0011 44 1 1.6647 -2.1141 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088892129.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:48 Heat of formation + Delta-G solvation = 112.802807 kcal Electronic energy + Delta-G solvation = -27442.834204 eV Core-core repulsion = 23591.332248 eV Total energy + Delta-G solvation = -3851.501956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.76507 -39.43397 -38.52841 -37.27375 -34.69013 -33.87655 -33.01952 -31.88568 -30.33072 -29.99025 -28.55902 -27.36549 -25.30513 -24.80730 -23.92809 -23.11160 -22.34449 -20.52244 -19.95360 -19.67831 -18.71767 -17.52657 -16.96132 -16.66135 -16.54250 -15.74178 -15.63739 -14.67236 -14.46159 -14.36852 -14.02956 -13.92113 -13.85546 -13.69167 -13.32708 -13.23121 -12.92668 -12.71885 -12.67847 -12.05594 -11.90721 -11.80384 -11.48718 -11.35819 -11.06958 -10.80272 -10.76937 -10.40638 -10.29769 -10.12264 -10.07345 -9.81143 -9.67378 -9.55942 -9.43299 -8.61615 -8.51750 -8.16885 -6.81692 -5.60108 -3.02867 0.04693 0.39659 1.57962 1.93138 2.86186 3.39600 3.43307 3.47577 3.48098 3.48961 3.70830 3.83000 3.89857 4.19127 4.36808 4.52999 4.76679 4.79113 4.90145 4.96020 5.17584 5.29489 5.33955 5.47901 5.51546 5.58702 5.63859 5.73838 5.85482 5.93437 6.05970 6.21436 6.35196 6.41208 6.46842 6.66070 6.71639 6.84101 6.96335 6.97012 7.23242 7.28971 7.59894 7.67812 7.91454 7.94454 8.40845 8.67554 9.25878 9.86905 10.51541 11.42985 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.032849 B = 0.002342 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.176944 B =11951.302888 C =12255.540860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.189 4.189 3 C 0.185 3.815 4 N -0.434 5.434 5 C 0.311 3.689 6 C -0.278 4.278 7 C 0.593 3.407 8 O -0.531 6.531 9 N -0.715 5.715 10 C 0.140 3.860 11 H 0.091 0.909 12 C -0.153 4.153 13 C 0.153 3.847 14 N -0.595 5.595 15 C -0.219 4.219 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.921 5.921 19 Si 0.914 3.086 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.155 3.845 24 H 0.036 0.964 25 C -0.155 4.155 26 C 0.127 3.873 27 N -0.312 5.312 28 N -0.305 5.305 29 C 0.158 3.842 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.183 0.817 34 H 0.393 0.607 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.014 0.986 38 H 0.108 0.892 39 H 0.252 0.748 40 H 0.053 0.947 41 H 0.038 0.962 42 H 0.051 0.949 43 H 0.206 0.794 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.269 -7.914 -4.071 28.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.195 4.195 3 C 0.002 3.998 4 N -0.143 5.143 5 C 0.080 3.920 6 C -0.295 4.295 7 C 0.379 3.621 8 O -0.408 6.408 9 N -0.365 5.365 10 C 0.036 3.964 11 H 0.109 0.891 12 C -0.192 4.192 13 C 0.028 3.972 14 N -0.320 5.320 15 C -0.347 4.347 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.569 5.569 19 Si 0.745 3.255 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.047 3.953 24 H 0.053 0.947 25 C -0.215 4.215 26 C -0.054 4.054 27 N -0.134 5.134 28 N -0.073 5.073 29 C 0.022 3.978 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.200 0.800 34 H 0.227 0.773 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.032 0.968 38 H 0.126 0.874 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.223 0.777 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -27.072 -7.458 -3.969 28.360 hybrid contribution 1.023 -0.768 -0.126 1.285 sum -26.050 -8.227 -4.095 27.623 Atomic orbital electron populations 1.20621 0.87406 1.04081 1.03421 1.20618 0.99188 0.92354 1.07361 1.23629 0.89011 0.98593 0.88613 1.68362 1.08398 1.23961 1.13564 1.20403 0.93196 0.81128 0.97313 1.19581 0.90354 0.93646 1.25887 1.16708 0.81525 0.87221 0.76639 1.90835 1.83915 1.16140 1.49883 1.45787 1.05102 1.09993 1.75662 1.22101 0.84862 0.91265 0.98172 0.89068 1.23394 1.00153 1.00576 0.95110 1.21952 0.87109 0.90838 0.97331 1.44482 1.02331 1.48231 1.36993 1.18972 0.81472 1.19755 1.14540 0.90542 1.24790 0.98147 0.99127 0.98629 1.69793 1.32222 1.31848 1.23058 0.86165 0.84610 0.77651 0.77121 1.21272 1.21644 1.21235 1.21006 0.87538 0.95906 0.90820 0.94672 1.22244 1.00204 1.01557 0.97488 1.24201 0.96621 0.92453 0.92076 1.77595 0.96355 1.08214 1.31218 1.47019 1.06087 1.07978 1.46224 1.21941 0.79369 1.01246 0.95231 0.90204 0.90059 0.90739 0.79964 0.77285 0.92077 0.91966 0.96794 0.87407 0.93691 0.92776 0.94306 0.92954 0.77706 0.80151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.16 10.03 36.00 0.36 0.20 16 2 C -0.19 -1.06 5.86 -104.87 -0.61 -1.67 16 3 C 0.18 1.48 10.97 -17.05 -0.19 1.30 16 4 N -0.43 -5.87 10.26 -12.00 -0.12 -5.99 16 5 C 0.31 4.42 7.74 -155.84 -1.21 3.21 16 6 C -0.28 -4.10 6.17 -104.66 -0.65 -4.75 16 7 C 0.59 10.30 7.78 -12.90 -0.10 10.20 16 8 O -0.53 -11.28 16.47 5.17 0.09 -11.20 16 9 N -0.71 -11.41 5.20 -53.30 -0.28 -11.69 16 10 C 0.14 2.69 2.76 -66.04 -0.18 2.51 16 11 H 0.09 1.89 7.41 -51.93 -0.38 1.50 16 12 C -0.15 -3.19 6.76 -24.58 -0.17 -3.35 16 13 C 0.15 3.82 5.89 -2.53 -0.01 3.81 16 14 N -0.60 -15.07 3.13 -162.50 -0.51 -15.58 16 15 C -0.22 -6.01 9.87 -15.06 -0.15 -6.16 16 16 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 17 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 18 N -0.92 -26.99 10.09 55.49 0.56 -26.43 16 19 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.16 3.19 3.48 -66.90 -0.23 2.95 16 24 H 0.04 0.69 7.70 -51.93 -0.40 0.29 16 25 C -0.16 -2.96 9.14 37.16 0.34 -2.62 16 26 C 0.13 1.47 11.44 -17.13 -0.20 1.27 16 27 N -0.31 -3.73 12.58 30.76 0.39 -3.34 16 28 N -0.31 -3.51 3.86 -11.97 -0.05 -3.55 16 29 C 0.16 1.13 10.94 -16.45 -0.18 0.95 16 30 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.08 0.05 8.10 -51.93 -0.42 -0.37 16 32 H 0.07 0.05 8.09 -51.93 -0.42 -0.37 16 33 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.39 5.06 7.24 -40.82 -0.30 4.77 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.11 3.00 5.87 -51.93 -0.31 2.70 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.05 1.05 8.03 -51.93 -0.42 0.64 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.21 1.56 7.46 -52.49 -0.39 1.17 16 44 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -37.10 367.77 -8.63 -45.74 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.96 Total: 1.98 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: -3.27 Total: 7.43 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: -0.01 Total: -66.58 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.10 -8.63 -45.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088892129.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.540 kcal (2) G-P(sol) polarization free energy of solvation -37.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds