Wall clock time and date at job start Tue Mar 31 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39963 * 120.32206 * 2 1 4 4 N 1.31502 * 120.10779 * 180.02562 * 3 2 1 5 5 C 1.33383 * 120.85243 * 359.67289 * 4 3 2 6 6 C 1.40809 * 132.47687 * 179.64962 * 5 4 3 7 7 C 1.46577 * 126.53727 * 0.73725 * 6 5 4 8 8 O 1.21720 * 120.00460 * 359.71199 * 7 6 5 9 9 N 1.34779 * 119.99782 * 179.71151 * 7 6 5 10 10 C 1.46498 * 119.99910 * 180.02562 * 9 7 6 11 11 H 1.09005 * 110.78011 * 323.21238 * 10 9 7 12 12 C 1.55158 * 110.72351 * 86.45393 * 10 9 7 13 13 C 1.54909 * 101.61642 * 153.88368 * 12 10 9 14 14 N 1.47427 * 104.83281 * 322.96922 * 13 12 10 15 15 C 1.36930 * 125.64624 * 204.16403 * 14 13 12 16 16 H 1.08002 * 119.99784 * 179.97438 * 15 14 13 17 17 C 1.38820 * 120.00266 * 359.97438 * 15 14 13 18 18 N 1.31614 * 119.99878 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99929 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47563 * 59.99860 * 19 17 15 21 21 H 1.48495 * 109.47219 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47032 * 299.99836 * 19 17 15 23 23 C 1.47014 * 108.70101 * 24.13279 * 14 13 12 24 24 H 1.09004 * 109.88272 * 239.36515 * 23 14 13 25 25 C 1.53006 * 109.88374 * 118.35608 * 23 14 13 26 26 C 1.40644 * 106.91974 * 180.47331 * 6 5 4 27 27 N 1.30698 * 108.72767 * 0.24257 * 26 6 5 28 28 N 1.36590 * 120.79566 * 0.61604 * 5 4 3 29 29 C 1.35758 * 120.32402 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47035 * 270.01609 * 1 2 3 31 31 H 1.08996 * 109.47614 * 30.01802 * 1 2 3 32 32 H 1.09006 * 109.47156 * 150.01967 * 1 2 3 33 33 H 1.07998 * 119.94455 * 359.97438 * 3 2 1 34 34 H 0.97002 * 120.00249 * 0.02562 * 9 7 6 35 35 H 1.09002 * 111.00366 * 35.78886 * 12 10 9 36 36 H 1.09002 * 111.00429 * 271.97948 * 12 10 9 37 37 H 1.09001 * 110.36668 * 81.81066 * 13 12 10 38 38 H 1.09004 * 110.36307 * 204.13193 * 13 12 10 39 39 H 0.96997 * 119.99856 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.46974 * 61.44956 * 25 23 14 41 41 H 1.08997 * 109.47249 * 181.45250 * 25 23 14 42 42 H 1.08997 * 109.47061 * 301.45080 * 25 23 14 43 43 H 1.08001 * 125.63409 * 180.27012 * 26 6 5 44 44 H 1.07996 * 120.42259 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2082 0.0000 4 7 3.5286 1.2032 -0.0005 5 6 4.2083 0.0556 0.0055 6 6 5.5865 -0.2333 0.0002 7 6 6.6822 0.7403 0.0007 8 8 6.4371 1.9326 0.0010 9 7 7.9612 0.3153 0.0011 10 6 9.0564 1.2883 0.0022 11 1 8.8037 2.1557 -0.6077 12 6 9.4065 1.7192 1.4510 13 6 10.8923 2.1318 1.3033 14 7 11.4577 1.1684 0.3411 15 6 12.7792 0.8247 0.2390 16 1 13.0943 0.1051 -0.5022 17 6 13.7140 1.4010 1.0882 18 7 13.3301 2.2783 1.9911 19 14 15.5168 0.9326 0.9484 20 1 16.0117 1.2685 -0.4108 21 1 16.3029 1.6819 1.9611 22 1 15.6690 -0.5257 1.1841 23 6 10.3675 0.6375 -0.4901 24 1 10.3106 -0.4454 -0.3795 25 6 10.6086 0.9985 -1.9573 26 6 5.7110 -1.6342 0.0004 27 7 4.5152 -2.1618 0.0002 28 7 3.5553 -1.1440 -0.0003 29 6 2.1924 -1.1718 0.0005 30 1 -0.3633 0.0003 1.0276 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5136 33 1 1.6780 2.1460 -0.0004 34 1 8.1566 -0.6348 0.0005 35 1 9.2999 0.8841 2.1435 36 1 8.7955 2.5652 1.7656 37 1 10.9672 3.1466 0.9126 38 1 11.4045 2.0549 2.2624 39 1 13.9832 2.6807 2.5847 40 1 11.5415 0.5467 -2.2940 41 1 9.7839 0.6242 -2.5638 42 1 10.6720 2.0818 -2.0592 43 1 6.6410 -2.1832 0.0011 44 1 1.6647 -2.1141 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088892129.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:46 Heat of formation + Delta-G solvation = 86.910709 kcal Electronic energy + Delta-G solvation = -27443.956970 eV Core-core repulsion = 23591.332248 eV Total energy + Delta-G solvation = -3852.624722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.55776 -40.79110 -39.44202 -38.85496 -35.54715 -35.37032 -33.99448 -33.42494 -32.04288 -31.09898 -30.19599 -28.00754 -26.51644 -25.90713 -25.74477 -24.18494 -23.11586 -22.13316 -21.46215 -21.17552 -19.64236 -18.67881 -18.29249 -17.99533 -17.37187 -17.22978 -16.53457 -16.46467 -15.78948 -15.58306 -15.40623 -15.03069 -14.81166 -14.54149 -14.39768 -14.28633 -13.97035 -13.86809 -13.67857 -13.39912 -13.20650 -13.06681 -12.91660 -12.70955 -12.69208 -12.55997 -12.20561 -12.12525 -12.05161 -11.95959 -11.54146 -11.42148 -10.89954 -10.83173 -10.69442 -10.49179 -9.98217 -9.07956 -8.87258 -7.71560 -5.16793 -0.65584 -0.29354 0.85377 1.00647 1.49684 1.53022 1.59041 2.06175 2.20467 2.54332 2.57076 2.78886 2.95046 3.38486 3.40273 3.61403 3.73155 3.84939 3.88822 3.91517 4.01089 4.15025 4.24329 4.37925 4.43413 4.52918 4.65743 4.72854 4.84696 4.85934 4.92516 4.98960 5.02185 5.06919 5.09287 5.17266 5.26902 5.40009 5.41974 5.52772 5.62357 5.69174 5.82482 6.15351 6.32813 6.54054 6.70894 7.13550 7.39634 7.81548 8.46087 9.30350 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.032849 B = 0.002342 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.176944 B =11951.302888 C =12255.540860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.168 4.168 3 C 0.191 3.809 4 N -0.494 5.494 5 C 0.300 3.700 6 C -0.324 4.324 7 C 0.596 3.404 8 O -0.581 6.581 9 N -0.702 5.702 10 C 0.158 3.842 11 H 0.075 0.925 12 C -0.138 4.138 13 C 0.159 3.841 14 N -0.613 5.613 15 C -0.225 4.225 16 H 0.087 0.913 17 C -0.072 4.072 18 N -0.952 5.952 19 Si 0.980 3.020 20 H -0.280 1.280 21 H -0.298 1.298 22 H -0.274 1.274 23 C 0.152 3.848 24 H 0.057 0.943 25 C -0.147 4.147 26 C 0.142 3.858 27 N -0.325 5.325 28 N -0.307 5.307 29 C 0.145 3.855 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.217 0.783 34 H 0.411 0.589 35 H 0.069 0.931 36 H 0.059 0.941 37 H -0.016 1.016 38 H 0.078 0.922 39 H 0.245 0.755 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.033 0.967 43 H 0.238 0.762 44 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.116 -10.399 -5.067 32.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.174 4.174 3 C 0.011 3.989 4 N -0.206 5.206 5 C 0.066 3.934 6 C -0.341 4.341 7 C 0.385 3.615 8 O -0.461 6.461 9 N -0.353 5.353 10 C 0.052 3.948 11 H 0.093 0.907 12 C -0.178 4.178 13 C 0.033 3.967 14 N -0.338 5.338 15 C -0.354 4.354 16 H 0.105 0.895 17 C -0.264 4.264 18 N -0.602 5.602 19 Si 0.809 3.191 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.200 1.200 23 C 0.046 3.954 24 H 0.075 0.925 25 C -0.206 4.206 26 C -0.039 4.039 27 N -0.147 5.147 28 N -0.074 5.074 29 C 0.011 3.989 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.233 0.767 34 H 0.248 0.752 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.002 0.998 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.254 0.746 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -29.990 -10.013 -4.996 32.009 hybrid contribution 1.586 0.033 0.162 1.595 sum -28.403 -9.980 -4.834 30.491 Atomic orbital electron populations 1.20787 0.83849 1.05820 1.04759 1.21098 1.01190 0.90816 1.04279 1.24423 0.87781 1.01188 0.85506 1.68386 1.10912 1.24416 1.16837 1.20538 0.93597 0.82258 0.97041 1.19357 0.90013 0.94397 1.30348 1.17073 0.82097 0.87091 0.75255 1.90795 1.84601 1.18342 1.52377 1.45503 1.04043 1.10289 1.75479 1.21664 0.85399 0.91476 0.96242 0.90735 1.23190 0.97168 1.00719 0.96736 1.21655 0.89451 0.89758 0.95790 1.44717 1.02913 1.48244 1.37964 1.19374 0.82564 1.19326 1.14144 0.89504 1.25649 1.02323 0.99639 0.98808 1.70048 1.32999 1.33198 1.23983 0.85118 0.79551 0.77600 0.76851 1.20602 1.22468 1.20023 1.21203 0.86482 0.96777 0.90977 0.92549 1.22129 1.01288 1.00441 0.96741 1.24620 0.97714 0.91179 0.90392 1.77524 0.96555 1.08567 1.32022 1.47224 1.07366 1.07003 1.45808 1.22861 0.77937 1.03569 0.94546 0.88802 0.88516 0.88890 0.76697 0.75192 0.91271 0.92195 0.99827 0.90406 0.94504 0.93141 0.91130 0.94742 0.74601 0.76477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.13 10.03 71.24 0.71 0.84 16 2 C -0.17 -1.34 5.86 -20.02 -0.12 -1.45 16 3 C 0.19 2.70 10.97 85.16 0.93 3.63 16 4 N -0.49 -13.32 10.26 -191.87 -1.97 -15.29 16 5 C 0.30 8.46 7.74 133.99 1.04 9.50 16 6 C -0.32 -9.57 6.17 -19.89 -0.12 -9.69 16 7 C 0.60 21.05 7.78 86.42 0.67 21.72 16 8 O -0.58 -25.70 16.47 -4.41 -0.07 -25.77 16 9 N -0.70 -22.07 5.20 -440.76 -2.29 -24.36 16 10 C 0.16 6.11 2.76 46.22 0.13 6.24 16 11 H 0.07 3.17 7.41 -2.38 -0.02 3.16 16 12 C -0.14 -5.95 6.76 31.99 0.22 -5.74 16 13 C 0.16 8.33 5.89 86.85 0.51 8.84 16 14 N -0.61 -31.53 3.13 -668.04 -2.09 -33.61 16 15 C -0.23 -12.43 9.87 84.04 0.83 -11.60 16 16 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 17 C -0.07 -4.11 5.49 84.86 0.47 -3.65 16 18 N -0.95 -57.86 10.09 21.65 0.22 -57.65 16 19 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 C 0.15 6.16 3.48 45.38 0.16 6.32 16 24 H 0.06 2.09 7.70 -2.38 -0.02 2.07 16 25 C -0.15 -5.46 9.14 71.98 0.66 -4.80 16 26 C 0.14 3.09 11.44 85.45 0.98 4.07 16 27 N -0.33 -7.26 12.58 -56.58 -0.71 -7.97 16 28 N -0.31 -6.60 3.86 -191.79 -0.74 -7.34 16 29 C 0.15 1.66 10.94 83.42 0.91 2.57 16 30 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.10 -0.34 8.10 -2.39 -0.02 -0.36 16 32 H 0.09 -0.37 8.09 -2.38 -0.02 -0.39 16 33 H 0.22 1.26 8.06 -2.91 -0.02 1.23 16 34 H 0.41 9.90 7.24 -92.71 -0.67 9.23 16 35 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.06 2.58 8.14 -2.39 -0.02 2.57 16 37 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 38 H 0.08 4.57 5.87 -2.38 -0.01 4.56 16 39 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 40 H 0.05 1.90 8.03 -2.39 -0.02 1.88 16 41 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.24 3.05 7.46 -2.91 -0.02 3.03 16 44 H 0.22 0.68 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -85.95 367.77 2.71 -83.24 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.36 Total: 13.95 kcal Atomic # 6 Polarization: 18.84 SS G_CDS: 7.98 Total: 26.81 kcal Atomic # 7 Polarization: -138.64 SS G_CDS: -7.58 Total: -146.22 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.07 Total: -25.77 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -85.95 2.71 -83.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088892129.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.153 kcal (2) G-P(sol) polarization free energy of solvation -85.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds