Wall clock time and date at job start Tue Mar 31 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30904 * 119.96407 * 2 1 4 4 C 1.34156 * 121.16655 * 180.32810 * 3 2 1 5 5 C 1.38706 * 132.24641 * 179.68476 * 4 3 2 6 6 C 1.38845 * 107.67276 * 179.97438 * 5 4 3 7 7 N 1.31292 * 108.99102 * 359.97438 * 6 5 4 8 8 N 1.37270 * 120.90079 * 359.66169 * 4 3 2 9 9 C 1.36069 * 119.97697 * 0.02562 * 8 4 3 10 10 C 1.38077 * 118.88640 * 359.97438 * 9 8 4 11 11 C 1.47593 * 120.49862 * 180.02562 * 10 9 8 12 12 O 1.21585 * 120.00139 * 173.85865 * 11 10 9 13 13 N 1.34779 * 120.00628 * 354.12766 * 11 10 9 14 14 C 1.46493 * 120.00525 * 179.72762 * 13 11 10 15 15 H 1.08998 * 110.64318 * 328.14347 * 14 13 11 16 16 C 1.55161 * 110.72126 * 91.48082 * 14 13 11 17 17 C 1.54903 * 101.58058 * 153.86608 * 16 14 13 18 18 N 1.47421 * 104.83395 * 322.98854 * 17 16 14 19 19 C 1.36943 * 125.64678 * 204.16318 * 18 17 16 20 20 H 1.07994 * 119.99802 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99927 * 359.96259 * 19 18 17 22 22 N 1.31615 * 120.00319 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99605 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47312 * 90.00141 * 23 21 19 25 25 H 1.48508 * 109.46985 * 210.00162 * 23 21 19 26 26 H 1.48502 * 109.47270 * 329.99440 * 23 21 19 27 27 C 1.47021 * 108.70246 * 24.13264 * 18 17 16 28 28 H 1.08998 * 110.00895 * 239.45018 * 27 18 17 29 29 C 1.53001 * 109.88158 * 118.35763 * 27 18 17 30 30 H 1.09008 * 109.47166 * 263.84689 * 1 2 3 31 31 H 1.08996 * 109.47292 * 23.84409 * 1 2 3 32 32 H 1.08992 * 109.47400 * 143.84802 * 1 2 3 33 33 H 1.07995 * 126.16428 * 359.95789 * 5 4 3 34 34 H 1.07999 * 125.50473 * 179.97438 * 6 5 4 35 35 H 1.07993 * 120.55630 * 180.02562 * 9 8 4 36 36 H 0.97006 * 119.99468 * 359.73190 * 13 11 10 37 37 H 1.09000 * 110.99962 * 271.93904 * 16 14 13 38 38 H 1.08998 * 111.00464 * 35.78852 * 16 14 13 39 39 H 1.09003 * 110.36293 * 204.14626 * 17 16 14 40 40 H 1.09003 * 110.46277 * 81.87974 * 17 16 14 41 41 H 0.97006 * 119.99802 * 179.97438 * 22 21 19 42 42 H 1.08995 * 109.47011 * 302.19106 * 29 27 18 43 43 H 1.08998 * 109.47272 * 62.19085 * 29 27 18 44 44 H 1.09001 * 109.46986 * 182.19043 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1608 1.1341 0.0000 4 6 3.5020 1.1622 -0.0066 5 6 4.4128 2.2084 -0.0137 6 6 5.6873 1.6576 -0.0179 7 7 5.5871 0.3485 -0.0130 8 7 4.2315 -0.0006 -0.0066 9 6 3.5944 -1.2029 -0.0003 10 6 2.2139 -1.2262 0.0064 11 6 1.4864 -2.5104 0.0138 12 8 0.2764 -2.5230 0.1324 13 7 2.1638 -3.6694 -0.1053 14 6 1.4423 -4.9443 -0.0919 15 1 0.5566 -4.8780 0.5398 16 6 1.0623 -5.3752 -1.5333 17 6 0.9745 -6.9146 -1.3847 18 7 2.0561 -7.2655 -0.4464 19 6 2.6721 -8.4854 -0.3588 20 1 3.4580 -8.6427 0.3651 21 6 2.2863 -9.5198 -1.2002 22 7 1.3280 -9.3283 -2.0819 23 14 3.1271 -11.1836 -1.0811 24 1 2.4004 -12.0369 -0.1071 25 1 3.1205 -11.8381 -2.4141 26 1 4.5290 -10.9984 -0.6276 27 6 2.3644 -6.0886 0.3791 28 1 3.4077 -5.8026 0.2460 29 6 2.0947 -6.4013 1.8523 30 1 -0.3634 -0.1102 1.0218 31 1 -0.3634 0.9399 -0.4154 32 1 -0.3634 -0.8297 -0.6062 33 1 4.1736 3.2615 -0.0160 34 1 6.6118 2.2158 -0.0241 35 1 4.1591 -2.1234 0.0001 36 1 3.1292 -3.6594 -0.1999 37 1 0.0998 -4.9554 -1.8255 38 1 1.8407 -5.0949 -2.2429 39 1 1.1360 -7.3985 -2.3480 40 1 0.0071 -7.2032 -0.9735 41 1 1.0587 -10.0511 -2.6701 42 1 1.0547 -6.7038 1.9750 43 1 2.7491 -7.2099 2.1778 44 1 2.2880 -5.5130 2.4536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088949025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:07 Heat of formation + Delta-G solvation = 118.075898 kcal Electronic energy + Delta-G solvation = -27790.034574 eV Core-core repulsion = 23938.761276 eV Total energy + Delta-G solvation = -3851.273298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.68520 -40.21204 -38.41566 -37.44707 -34.96346 -34.01725 -32.41106 -32.04438 -30.50917 -30.01645 -28.59463 -28.23978 -25.46610 -24.49898 -24.06206 -22.89550 -21.78709 -21.16790 -20.37168 -19.88430 -18.89907 -17.83156 -16.89044 -16.66086 -16.51246 -15.90787 -15.56042 -14.97794 -14.83361 -14.49362 -14.35061 -14.02545 -13.76504 -13.75169 -13.46143 -13.14403 -12.92574 -12.41680 -12.20583 -12.08364 -12.02650 -11.67051 -11.65113 -11.58765 -11.22216 -10.92582 -10.90355 -10.68976 -10.53844 -10.36195 -10.15270 -9.86186 -9.80542 -9.75750 -9.63510 -8.86150 -8.71286 -8.28135 -6.95400 -5.72314 -3.15514 -0.02960 0.32753 1.59413 2.11984 2.65629 2.91493 3.21847 3.35444 3.40640 3.42448 3.46736 3.69323 3.77784 4.37014 4.43621 4.54863 4.79868 4.85849 5.04999 5.17358 5.33649 5.36805 5.43157 5.47927 5.52105 5.54236 5.62236 5.70288 5.90152 6.00972 6.05011 6.10126 6.16920 6.21325 6.24572 6.40773 6.48191 6.60500 6.76302 6.97157 7.00383 7.28864 7.39361 7.46674 7.55577 7.77934 8.04653 8.27927 9.13628 9.74433 10.37205 11.31038 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.002707 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.617864 B =10340.266859 C =11158.382290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.258 3.742 3 N -0.474 5.474 4 C 0.269 3.731 5 C -0.269 4.269 6 C 0.099 3.901 7 N -0.312 5.312 8 N -0.319 5.319 9 C 0.212 3.788 10 C -0.231 4.231 11 C 0.576 3.424 12 O -0.520 6.520 13 N -0.709 5.709 14 C 0.135 3.865 15 H 0.100 0.900 16 C -0.153 4.153 17 C 0.152 3.848 18 N -0.595 5.595 19 C -0.222 4.222 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.155 3.845 28 H 0.035 0.965 29 C -0.156 4.156 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.164 0.836 34 H 0.201 0.799 35 H 0.185 0.815 36 H 0.395 0.605 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.110 0.890 40 H 0.016 0.984 41 H 0.253 0.747 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.737 20.670 3.849 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 N -0.187 5.187 4 C 0.043 3.957 5 C -0.299 4.299 6 C -0.080 4.080 7 N -0.135 5.135 8 N -0.089 5.089 9 C 0.074 3.926 10 C -0.242 4.242 11 C 0.361 3.639 12 O -0.397 6.397 13 N -0.359 5.359 14 C 0.031 3.969 15 H 0.118 0.882 16 C -0.193 4.193 17 C 0.027 3.973 18 N -0.320 5.320 19 C -0.350 4.350 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.046 3.954 28 H 0.052 0.948 29 C -0.216 4.216 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.131 0.869 33 H 0.182 0.818 34 H 0.218 0.782 35 H 0.202 0.798 36 H 0.229 0.771 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.034 0.966 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.360 20.284 3.824 20.913 hybrid contribution 1.095 -0.879 0.117 1.409 sum 4.455 19.405 3.941 20.296 Atomic orbital electron populations 1.21140 0.85622 1.04808 1.05160 1.22036 0.98318 0.85436 0.84888 1.68128 1.03655 1.28102 1.18821 1.20904 0.88291 0.87001 0.99474 1.21022 0.89564 0.98830 1.20530 1.23970 0.99093 0.90958 0.93979 1.77967 0.88826 1.15593 1.31133 1.47128 1.07902 1.06032 1.47814 1.22542 0.91916 0.88819 0.89356 1.20744 0.91595 0.97411 1.14419 1.17296 0.87028 0.82315 0.77296 1.90772 1.12809 1.86428 1.49678 1.46041 1.10637 1.06053 1.73125 1.22282 0.95403 0.80427 0.98812 0.88213 1.23417 1.00604 1.00546 0.94705 1.21960 0.90042 0.87408 0.97869 1.44480 1.41242 1.07666 1.38596 1.19010 1.13904 0.86399 1.15733 0.90446 1.24785 0.98736 0.98329 0.98604 1.69783 1.31450 1.31420 1.24190 0.86085 0.78759 0.83750 0.76952 1.21594 1.21639 1.20706 1.20993 0.95454 0.87815 0.91088 0.94756 1.22251 1.02061 0.99987 0.97260 0.88770 0.90451 0.86946 0.81810 0.78211 0.79830 0.77050 0.91731 0.91925 0.87274 0.96588 0.93624 0.92780 0.92643 0.94352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 8.92 36.00 0.32 -0.79 16 2 C 0.26 3.01 6.87 -81.73 -0.56 2.45 16 3 N -0.47 -5.92 10.37 -8.17 -0.08 -6.01 16 4 C 0.27 3.30 7.91 -155.32 -1.23 2.07 16 5 C -0.27 -2.66 10.91 -39.18 -0.43 -3.09 16 6 C 0.10 0.87 11.95 -17.56 -0.21 0.66 16 7 N -0.31 -3.59 12.65 30.49 0.39 -3.21 16 8 N -0.32 -3.78 3.88 -11.68 -0.05 -3.83 16 9 C 0.21 2.18 10.83 -15.73 -0.17 2.01 16 10 C -0.23 -2.60 5.88 -104.88 -0.62 -3.22 16 11 C 0.58 7.36 7.70 -12.44 -0.10 7.27 16 12 O -0.52 -7.84 13.10 5.29 0.07 -7.77 16 13 N -0.71 -8.96 5.13 -53.05 -0.27 -9.23 16 14 C 0.13 2.19 2.85 -66.10 -0.19 2.00 16 15 H 0.10 1.72 7.25 -51.93 -0.38 1.35 16 16 C -0.15 -2.77 6.77 -24.58 -0.17 -2.93 16 17 C 0.15 3.50 5.89 -2.53 -0.01 3.49 16 18 N -0.59 -14.05 3.13 -162.58 -0.51 -14.55 16 19 C -0.22 -5.82 9.89 -15.06 -0.15 -5.97 16 20 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 22 N -0.92 -25.85 10.09 55.49 0.56 -25.29 16 23 Si 0.91 21.36 29.55 -169.99 -5.02 16.34 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 27 C 0.15 2.87 3.48 -66.95 -0.23 2.64 16 28 H 0.03 0.62 7.71 -51.93 -0.40 0.22 16 29 C -0.16 -2.71 9.13 37.16 0.34 -2.37 16 30 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.11 1.25 5.92 -51.93 -0.31 0.94 16 33 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.20 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.18 1.36 6.49 -52.49 -0.34 1.02 16 36 H 0.39 4.04 6.47 -40.82 -0.26 3.78 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.11 2.85 5.87 -51.93 -0.31 2.54 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 1.00 8.04 -51.93 -0.42 0.59 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 360.69 15.07 5.44 5.44 Total: -1.00 -31.72 360.69 -8.74 -40.46 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.76 Total: 3.78 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -3.50 Total: 3.88 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.04 Total: -62.12 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.07 Total: -7.77 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.72 -8.74 -40.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088949025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.538 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds