Wall clock time and date at job start Tue Mar 31 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30904 * 119.96407 * 2 1 4 4 C 1.34156 * 121.16655 * 180.32810 * 3 2 1 5 5 C 1.38706 * 132.24641 * 179.68476 * 4 3 2 6 6 C 1.38845 * 107.67276 * 179.97438 * 5 4 3 7 7 N 1.31292 * 108.99102 * 359.97438 * 6 5 4 8 8 N 1.37270 * 120.90079 * 359.66169 * 4 3 2 9 9 C 1.36069 * 119.97697 * 0.02562 * 8 4 3 10 10 C 1.38077 * 118.88640 * 359.97438 * 9 8 4 11 11 C 1.47593 * 120.49862 * 180.02562 * 10 9 8 12 12 O 1.21585 * 120.00139 * 173.85865 * 11 10 9 13 13 N 1.34779 * 120.00628 * 354.12766 * 11 10 9 14 14 C 1.46493 * 120.00525 * 179.72762 * 13 11 10 15 15 H 1.08998 * 110.64318 * 328.14347 * 14 13 11 16 16 C 1.55161 * 110.72126 * 91.48082 * 14 13 11 17 17 C 1.54903 * 101.58058 * 153.86608 * 16 14 13 18 18 N 1.47421 * 104.83395 * 322.98854 * 17 16 14 19 19 C 1.36943 * 125.64678 * 204.16318 * 18 17 16 20 20 H 1.07994 * 119.99802 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99927 * 359.96259 * 19 18 17 22 22 N 1.31615 * 120.00319 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99605 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47312 * 90.00141 * 23 21 19 25 25 H 1.48508 * 109.46985 * 210.00162 * 23 21 19 26 26 H 1.48502 * 109.47270 * 329.99440 * 23 21 19 27 27 C 1.47021 * 108.70246 * 24.13264 * 18 17 16 28 28 H 1.08998 * 110.00895 * 239.45018 * 27 18 17 29 29 C 1.53001 * 109.88158 * 118.35763 * 27 18 17 30 30 H 1.09008 * 109.47166 * 263.84689 * 1 2 3 31 31 H 1.08996 * 109.47292 * 23.84409 * 1 2 3 32 32 H 1.08992 * 109.47400 * 143.84802 * 1 2 3 33 33 H 1.07995 * 126.16428 * 359.95789 * 5 4 3 34 34 H 1.07999 * 125.50473 * 179.97438 * 6 5 4 35 35 H 1.07993 * 120.55630 * 180.02562 * 9 8 4 36 36 H 0.97006 * 119.99468 * 359.73190 * 13 11 10 37 37 H 1.09000 * 110.99962 * 271.93904 * 16 14 13 38 38 H 1.08998 * 111.00464 * 35.78852 * 16 14 13 39 39 H 1.09003 * 110.36293 * 204.14626 * 17 16 14 40 40 H 1.09003 * 110.46277 * 81.87974 * 17 16 14 41 41 H 0.97006 * 119.99802 * 179.97438 * 22 21 19 42 42 H 1.08995 * 109.47011 * 302.19106 * 29 27 18 43 43 H 1.08998 * 109.47272 * 62.19085 * 29 27 18 44 44 H 1.09001 * 109.46986 * 182.19043 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1608 1.1341 0.0000 4 6 3.5020 1.1622 -0.0066 5 6 4.4128 2.2084 -0.0137 6 6 5.6873 1.6576 -0.0179 7 7 5.5871 0.3485 -0.0130 8 7 4.2315 -0.0006 -0.0066 9 6 3.5944 -1.2029 -0.0003 10 6 2.2139 -1.2262 0.0064 11 6 1.4864 -2.5104 0.0138 12 8 0.2764 -2.5230 0.1324 13 7 2.1638 -3.6694 -0.1053 14 6 1.4423 -4.9443 -0.0919 15 1 0.5566 -4.8780 0.5398 16 6 1.0623 -5.3752 -1.5333 17 6 0.9745 -6.9146 -1.3847 18 7 2.0561 -7.2655 -0.4464 19 6 2.6721 -8.4854 -0.3588 20 1 3.4580 -8.6427 0.3651 21 6 2.2863 -9.5198 -1.2002 22 7 1.3280 -9.3283 -2.0819 23 14 3.1271 -11.1836 -1.0811 24 1 2.4004 -12.0369 -0.1071 25 1 3.1205 -11.8381 -2.4141 26 1 4.5290 -10.9984 -0.6276 27 6 2.3644 -6.0886 0.3791 28 1 3.4077 -5.8026 0.2460 29 6 2.0947 -6.4013 1.8523 30 1 -0.3634 -0.1102 1.0218 31 1 -0.3634 0.9399 -0.4154 32 1 -0.3634 -0.8297 -0.6062 33 1 4.1736 3.2615 -0.0160 34 1 6.6118 2.2158 -0.0241 35 1 4.1591 -2.1234 0.0001 36 1 3.1292 -3.6594 -0.1999 37 1 0.0998 -4.9554 -1.8255 38 1 1.8407 -5.0949 -2.2429 39 1 1.1360 -7.3985 -2.3480 40 1 0.0071 -7.2032 -0.9735 41 1 1.0587 -10.0511 -2.6701 42 1 1.0547 -6.7038 1.9750 43 1 2.7491 -7.2099 2.1778 44 1 2.2880 -5.5130 2.4536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088949025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:06 Heat of formation + Delta-G solvation = 98.303559 kcal Electronic energy + Delta-G solvation = -27790.891967 eV Core-core repulsion = 23938.761276 eV Total energy + Delta-G solvation = -3852.130691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.48055 -41.27926 -39.60055 -38.63327 -36.01012 -35.23724 -33.86373 -33.09293 -32.04096 -31.11500 -30.07392 -29.08379 -26.73375 -25.90644 -25.51367 -23.76875 -22.61690 -22.31996 -21.76605 -21.42387 -19.76677 -18.86129 -18.68433 -17.59497 -17.35070 -17.23833 -16.56933 -16.36760 -16.01438 -15.67123 -15.60278 -15.17102 -15.07549 -14.63403 -14.51588 -14.33021 -13.98802 -13.93038 -13.69547 -13.25609 -13.17197 -12.90998 -12.82258 -12.75399 -12.58241 -12.44564 -12.42770 -12.19504 -12.09145 -11.97497 -11.56202 -11.41753 -11.26869 -10.79284 -10.71404 -10.62831 -10.07261 -9.07418 -8.87848 -7.73756 -5.18158 -0.83668 -0.50438 0.82057 1.33944 1.49243 1.50091 1.58315 1.78094 1.85226 2.32846 2.52165 2.67238 2.93938 3.02311 3.36899 3.45994 3.66693 3.77707 3.85302 3.97177 4.07352 4.11650 4.24518 4.32266 4.52956 4.62045 4.64187 4.67656 4.73644 4.77912 4.84104 4.90877 4.95548 5.05065 5.11778 5.15265 5.32833 5.40351 5.43627 5.52513 5.59859 5.64036 5.83558 6.24680 6.33307 6.35901 6.49846 7.03954 7.13313 7.81211 8.43627 9.27822 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.002707 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.617864 B =10340.266859 C =11158.382290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.250 3.750 3 N -0.490 5.490 4 C 0.238 3.762 5 C -0.267 4.267 6 C 0.112 3.888 7 N -0.335 5.335 8 N -0.331 5.331 9 C 0.223 3.777 10 C -0.240 4.240 11 C 0.585 3.415 12 O -0.543 6.543 13 N -0.699 5.699 14 C 0.155 3.845 15 H 0.093 0.907 16 C -0.138 4.138 17 C 0.156 3.844 18 N -0.614 5.614 19 C -0.225 4.225 20 H 0.084 0.916 21 C -0.068 4.068 22 N -0.950 5.950 23 Si 0.974 3.026 24 H -0.291 1.291 25 H -0.297 1.297 26 H -0.268 1.268 27 C 0.149 3.851 28 H 0.052 0.948 29 C -0.148 4.148 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.184 0.816 34 H 0.244 0.756 35 H 0.212 0.788 36 H 0.409 0.591 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.075 0.925 40 H -0.013 1.013 41 H 0.245 0.755 42 H 0.037 0.963 43 H 0.045 0.955 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.884 22.672 4.787 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.085 3.915 3 N -0.203 5.203 4 C 0.014 3.986 5 C -0.297 4.297 6 C -0.068 4.068 7 N -0.158 5.158 8 N -0.101 5.101 9 C 0.085 3.915 10 C -0.250 4.250 11 C 0.371 3.629 12 O -0.422 6.422 13 N -0.351 5.351 14 C 0.050 3.950 15 H 0.111 0.889 16 C -0.178 4.178 17 C 0.030 3.970 18 N -0.339 5.339 19 C -0.354 4.354 20 H 0.102 0.898 21 C -0.260 4.260 22 N -0.600 5.600 23 Si 0.804 3.196 24 H -0.218 1.218 25 H -0.224 1.224 26 H -0.193 1.193 27 C 0.042 3.958 28 H 0.070 0.930 29 C -0.207 4.207 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.201 0.799 34 H 0.260 0.740 35 H 0.228 0.772 36 H 0.247 0.753 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.005 0.995 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.546 22.333 4.791 23.504 hybrid contribution 0.504 -1.354 -0.144 1.452 sum 6.050 20.979 4.647 22.323 Atomic orbital electron populations 1.21089 0.85013 1.04882 1.05188 1.22232 0.98871 0.85592 0.84759 1.68129 1.04085 1.28374 1.19736 1.21350 0.88604 0.88017 1.00670 1.21476 0.89628 0.99494 1.19116 1.24712 1.00280 0.90146 0.91622 1.77942 0.88702 1.17169 1.31976 1.47295 1.08096 1.06267 1.48455 1.22909 0.91751 0.89540 0.87260 1.20418 0.91976 0.96231 1.16425 1.17377 0.86671 0.82546 0.76325 1.90775 1.13993 1.86778 1.50608 1.45751 1.11234 1.04708 1.73361 1.21804 0.94961 0.81292 0.96942 0.88927 1.23213 1.01459 0.96764 0.96361 1.21679 0.88751 0.90589 0.95957 1.44714 1.41030 1.08431 1.39742 1.19364 1.13546 0.87477 1.14972 0.89787 1.25559 0.99854 1.01607 0.98987 1.70035 1.33041 1.31763 1.25144 0.85129 0.78395 0.79883 0.76235 1.21824 1.22403 1.19256 1.21219 0.96724 0.86749 0.91099 0.92997 1.22140 1.00770 1.01117 0.96698 0.88427 0.89377 0.88041 0.79894 0.74023 0.77191 0.75324 0.90911 0.91147 0.90677 0.99493 0.94500 0.94377 0.93625 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 8.92 71.23 0.64 -1.41 16 2 C 0.25 5.59 6.87 43.51 0.30 5.89 16 3 N -0.49 -11.70 10.37 -179.76 -1.86 -13.56 16 4 C 0.24 5.43 7.91 133.01 1.05 6.48 16 5 C -0.27 -4.59 10.91 22.53 0.25 -4.34 16 6 C 0.11 1.59 11.95 84.92 1.01 2.60 16 7 N -0.34 -6.81 12.65 -57.45 -0.73 -7.54 16 8 N -0.33 -7.16 3.88 -190.85 -0.74 -7.90 16 9 C 0.22 4.10 10.83 84.00 0.91 5.01 16 10 C -0.24 -5.02 5.88 -20.03 -0.12 -5.14 16 11 C 0.58 13.96 7.70 86.71 0.67 14.63 16 12 O -0.54 -15.82 13.10 -3.98 -0.05 -15.87 16 13 N -0.70 -16.06 5.13 -440.03 -2.26 -18.31 16 14 C 0.16 4.83 2.85 46.18 0.13 4.96 16 15 H 0.09 3.09 7.25 -2.39 -0.02 3.08 16 16 C -0.14 -4.94 6.77 31.99 0.22 -4.73 16 17 C 0.16 7.37 5.89 86.85 0.51 7.88 16 18 N -0.61 -29.10 3.13 -668.29 -2.09 -31.19 16 19 C -0.22 -11.79 9.89 84.03 0.83 -10.96 16 20 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 21 C -0.07 -3.70 5.49 84.86 0.47 -3.24 16 22 N -0.95 -55.22 10.09 21.65 0.22 -55.00 16 23 Si 0.97 44.40 29.55 68.60 2.03 46.43 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 25 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 C 0.15 5.30 3.48 45.34 0.16 5.46 16 28 H 0.05 1.71 7.71 -2.39 -0.02 1.69 16 29 C -0.15 -4.89 9.13 71.98 0.66 -4.23 16 30 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.10 2.23 5.92 -2.39 -0.01 2.21 16 33 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.24 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.21 2.45 6.49 -2.91 -0.02 2.43 16 36 H 0.41 7.09 6.47 -92.70 -0.60 6.49 16 37 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.08 4.10 5.87 -2.39 -0.01 4.08 16 40 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H 0.25 13.98 8.31 -92.70 -0.77 13.21 16 42 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 44 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -70.29 360.69 2.64 -67.65 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.44 Total: 16.43 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 7.68 Total: 18.87 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -7.46 Total: -133.51 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.05 Total: -15.87 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -70.29 2.64 -67.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088949025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.957 kcal (2) G-P(sol) polarization free energy of solvation -70.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds