Wall clock time and date at job start Tue Mar 31 2020 05:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35338 * 125.69865 * 2 1 4 4 N 1.36164 * 107.14569 * 179.97438 * 3 2 1 5 5 C 1.36218 * 133.93088 * 180.02562 * 4 3 2 6 6 C 1.35481 * 120.52158 * 179.97438 * 5 4 3 7 7 N 1.32690 * 122.12166 * 359.83555 * 6 5 4 8 8 C 1.32303 * 121.17664 * 0.42303 * 7 6 5 9 9 C 1.47807 * 120.58350 * 179.80501 * 8 7 6 10 10 O 1.21564 * 119.99718 * 179.72296 * 9 8 7 11 11 N 1.34776 * 120.00452 * 359.72806 * 9 8 7 12 12 C 1.46493 * 120.00089 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.64376 * 323.31175 * 12 11 9 14 14 C 1.55159 * 110.72192 * 86.45178 * 12 11 9 15 15 C 1.54903 * 101.58460 * 153.86303 * 14 12 11 16 16 N 1.47429 * 104.83403 * 322.99305 * 15 14 12 17 17 C 1.36937 * 125.64895 * 203.86397 * 16 15 14 18 18 H 1.08002 * 119.99903 * 161.49833 * 17 16 15 19 19 C 1.38812 * 119.99917 * 341.48960 * 17 16 15 20 20 N 1.31620 * 119.99793 * 157.54413 * 19 17 16 21 21 Si 1.86799 * 120.00197 * 337.54912 * 19 17 16 22 22 H 1.48500 * 109.47046 * 84.53559 * 21 19 17 23 23 H 1.48499 * 109.47121 * 204.53520 * 21 19 17 24 24 H 1.48503 * 109.46914 * 324.53527 * 21 19 17 25 25 C 1.47024 * 108.69993 * 24.12514 * 16 15 14 26 26 H 1.08998 * 109.88127 * 239.52338 * 25 16 15 27 27 C 1.53000 * 109.88206 * 118.36148 * 25 16 15 28 28 C 1.37562 * 106.99203 * 0.02562 * 4 3 2 29 29 N 1.31852 * 108.10722 * 359.97438 * 28 4 3 30 30 H 1.08998 * 109.47387 * 89.99314 * 1 2 3 31 31 H 1.08993 * 109.47418 * 209.99845 * 1 2 3 32 32 H 1.09003 * 109.46797 * 329.99751 * 1 2 3 33 33 H 1.08000 * 126.42670 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.73947 * 359.96293 * 5 4 3 35 35 H 1.08002 * 118.94179 * 180.02562 * 6 5 4 36 36 H 0.97003 * 119.99279 * 359.97438 * 11 9 8 37 37 H 1.09007 * 111.00627 * 35.78727 * 14 12 11 38 38 H 1.09004 * 111.03511 * 271.95737 * 14 12 11 39 39 H 1.09002 * 110.36954 * 204.15307 * 15 14 12 40 40 H 1.09004 * 110.36658 * 81.82598 * 15 14 12 41 41 H 0.96998 * 119.99831 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.47049 * 61.44771 * 27 25 16 43 43 H 1.08992 * 109.47398 * 181.45161 * 27 25 16 44 44 H 1.09007 * 109.46846 * 301.45274 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2967 1.0991 0.0000 4 7 3.5876 0.6658 0.0006 5 6 4.7957 1.2952 0.0013 6 6 5.9451 0.5780 0.0023 7 7 5.9488 -0.7489 0.0058 8 6 4.8187 -1.4370 0.0002 9 6 4.8382 -2.9149 -0.0001 10 8 3.7935 -3.5365 -0.0002 11 7 6.0141 -3.5735 -0.0001 12 6 6.0333 -5.0383 0.0001 13 1 5.2205 -5.4331 0.6098 14 6 5.9504 -5.5887 -1.4482 15 6 6.6475 -6.9639 -1.2987 16 7 7.7400 -6.7307 -0.3366 17 6 8.8824 -7.4782 -0.2296 18 1 9.7456 -7.0753 0.2792 19 6 8.9307 -8.7538 -0.7750 20 7 10.0911 -9.2975 -1.0754 21 14 7.3490 -9.6986 -1.0827 22 1 6.7831 -9.3018 -2.3970 23 1 7.6356 -11.1557 -1.0867 24 1 6.3709 -9.3894 -0.0089 25 6 7.3970 -5.5664 0.4931 26 1 8.1569 -4.7934 0.3794 27 6 7.2928 -5.9859 1.9607 28 6 3.5501 -0.7093 0.0003 29 7 2.2862 -1.0848 0.0002 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9652 2.1269 -0.0004 34 1 4.8376 2.3744 0.0009 35 1 6.8888 1.1032 0.0033 36 1 6.8477 -3.0774 -0.0004 37 1 6.4952 -4.9478 -2.1415 38 1 4.9136 -5.7083 -1.7626 39 1 7.0497 -7.2916 -2.2573 40 1 5.9485 -7.7030 -0.9069 41 1 10.1249 -10.1887 -1.4568 42 1 8.2556 -6.3698 2.2981 43 1 7.0132 -5.1237 2.5661 44 1 6.5355 -6.7631 2.0636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088965375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:46 Heat of formation + Delta-G solvation = 105.956899 kcal Electronic energy + Delta-G solvation = -27728.467236 eV Core-core repulsion = 23876.668419 eV Total energy + Delta-G solvation = -3851.798817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.39353 -39.93435 -38.79189 -37.75131 -34.82339 -34.09927 -32.22743 -32.03799 -30.65982 -30.32365 -29.18877 -28.32959 -25.75199 -24.37544 -23.85573 -23.64650 -21.67251 -21.11631 -20.47489 -19.85291 -18.73805 -18.22546 -16.88447 -16.68121 -16.53957 -16.09724 -15.79456 -15.06695 -14.91242 -14.81998 -14.49624 -14.14486 -13.81091 -13.64261 -13.39436 -13.34130 -12.99118 -12.80739 -12.68442 -12.61326 -12.08752 -11.84866 -11.65666 -11.52717 -11.15470 -10.85633 -10.74357 -10.71295 -10.44844 -10.40409 -10.12656 -9.94776 -9.86950 -9.40013 -9.16850 -8.82997 -8.64512 -8.57248 -7.04495 -5.91517 -3.22161 -0.31877 0.78964 1.88421 2.34606 2.54415 2.86506 3.40316 3.42512 3.52320 3.53689 3.56372 3.67053 3.85600 4.16730 4.58955 4.60404 4.65927 4.74845 4.80321 4.98858 5.17953 5.27991 5.29467 5.32238 5.33515 5.37525 5.60597 5.64029 5.66913 5.91021 5.99134 6.09036 6.15062 6.23646 6.32327 6.33831 6.46293 6.49212 6.67372 6.78641 6.83507 6.98264 7.05126 7.45769 7.62280 7.73547 8.21889 8.34351 8.85769 9.71869 10.19578 11.24401 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.002755 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.664867 B =10159.668663 C =10875.460056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.059 3.941 3 C -0.084 4.084 4 N -0.356 5.356 5 C 0.032 3.968 6 C 0.031 3.969 7 N -0.425 5.425 8 C 0.185 3.815 9 C 0.570 3.430 10 O -0.497 6.497 11 N -0.692 5.692 12 C 0.135 3.865 13 H 0.099 0.901 14 C -0.141 4.141 15 C 0.112 3.888 16 N -0.601 5.601 17 C -0.237 4.237 18 H 0.093 0.907 19 C 0.023 3.977 20 N -0.909 5.909 21 Si 0.880 3.120 22 H -0.285 1.285 23 H -0.303 1.303 24 H -0.275 1.275 25 C 0.156 3.844 26 H 0.049 0.951 27 C -0.156 4.156 28 C 0.195 3.805 29 N -0.430 5.430 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.190 0.810 34 H 0.176 0.824 35 H 0.186 0.814 36 H 0.410 0.590 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.028 0.972 41 H 0.263 0.737 42 H 0.062 0.938 43 H 0.041 0.959 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 26.756 2.495 30.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 C -0.217 4.217 4 N -0.029 5.029 5 C -0.093 4.093 6 C -0.110 4.110 7 N -0.140 5.140 8 C 0.019 3.981 9 C 0.351 3.649 10 O -0.369 6.369 11 N -0.344 5.344 12 C 0.030 3.970 13 H 0.117 0.883 14 C -0.180 4.180 15 C -0.014 4.014 16 N -0.327 5.327 17 C -0.364 4.364 18 H 0.110 0.890 19 C -0.176 4.176 20 N -0.553 5.553 21 Si 0.711 3.289 22 H -0.212 1.212 23 H -0.231 1.231 24 H -0.201 1.201 25 C 0.049 3.951 26 H 0.067 0.933 27 C -0.215 4.215 28 C -0.053 4.053 29 N -0.151 5.151 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.207 0.793 34 H 0.193 0.807 35 H 0.203 0.797 36 H 0.246 0.754 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.090 25.066 2.455 28.859 hybrid contribution -0.794 1.135 -0.174 1.396 sum -14.884 26.201 2.281 30.220 Atomic orbital electron populations 1.20190 0.86206 1.03574 1.03150 1.21327 0.97441 0.87606 1.01083 1.22511 0.80253 1.01464 1.17445 1.42836 1.06332 1.09016 1.44766 1.22769 0.83117 1.00831 1.02624 1.22125 0.97748 0.89226 1.01888 1.68127 1.27305 1.08905 1.09700 1.22302 0.83881 0.95055 0.96894 1.17197 0.84858 0.84040 0.78777 1.90905 1.31606 1.66700 1.47643 1.45833 1.08090 1.07565 1.72937 1.22224 0.99585 0.77422 0.97741 0.88323 1.23151 1.00761 0.98031 0.96060 1.21963 0.90427 0.94284 0.94697 1.44833 1.19869 1.32883 1.35112 1.18576 0.87905 0.95073 1.34798 0.88955 1.24986 0.96282 0.96764 0.99564 1.69836 1.23705 1.16831 1.44877 0.87017 0.84804 0.78738 0.78370 1.21162 1.23145 1.20095 1.21077 0.92008 0.91197 0.90835 0.93345 1.22211 1.02493 1.00056 0.96774 1.22474 0.94665 0.80232 1.07900 1.70597 0.97727 1.28530 1.18238 0.90382 0.90137 0.90617 0.79300 0.80679 0.79675 0.75385 0.90826 0.90994 0.91896 0.95426 0.92736 0.91903 0.93995 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.42 36.00 0.38 -0.14 16 2 C 0.06 0.63 7.07 -82.87 -0.59 0.05 16 3 C -0.08 -0.69 11.70 -16.66 -0.19 -0.89 16 4 N -0.36 -3.51 2.95 -61.13 -0.18 -3.69 16 5 C 0.03 0.21 11.00 -16.59 -0.18 0.02 16 6 C 0.03 0.22 11.01 -18.17 -0.20 0.02 16 7 N -0.43 -4.69 9.67 -8.68 -0.08 -4.77 16 8 C 0.18 2.54 6.97 -80.53 -0.56 1.97 16 9 C 0.57 9.12 7.81 -12.35 -0.10 9.02 16 10 O -0.50 -9.56 15.95 5.31 0.08 -9.47 16 11 N -0.69 -10.35 5.20 -52.99 -0.28 -10.63 16 12 C 0.13 2.34 2.76 -66.10 -0.18 2.16 16 13 H 0.10 1.81 7.41 -51.93 -0.38 1.42 16 14 C -0.14 -2.57 6.77 -24.58 -0.17 -2.74 16 15 C 0.11 2.48 4.69 -2.53 -0.01 2.46 16 16 N -0.60 -14.28 2.94 -162.57 -0.48 -14.76 16 17 C -0.24 -6.58 10.16 -15.06 -0.15 -6.73 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 19 C 0.02 0.66 5.43 -17.43 -0.09 0.56 16 20 N -0.91 -27.97 13.97 55.49 0.78 -27.20 16 21 Si 0.88 22.83 24.27 -169.99 -4.13 18.70 16 22 H -0.28 -7.13 6.49 56.52 0.37 -6.77 16 23 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 24 H -0.28 -7.07 6.66 56.52 0.38 -6.69 16 25 C 0.16 3.01 3.48 -66.95 -0.23 2.78 16 26 H 0.05 0.90 7.69 -51.93 -0.40 0.50 16 27 C -0.16 -2.86 9.14 37.16 0.34 -2.52 16 28 C 0.19 2.70 7.66 -153.99 -1.18 1.52 16 29 N -0.43 -6.46 10.74 -7.53 -0.08 -6.54 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.19 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.18 0.33 8.06 -52.49 -0.42 -0.09 16 35 H 0.19 0.63 8.06 -52.49 -0.42 0.20 16 36 H 0.41 5.41 7.69 -40.82 -0.31 5.09 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.48 6.67 -51.93 -0.35 1.13 16 40 H 0.03 0.65 5.56 -51.93 -0.29 0.36 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.06 1.22 8.02 -51.93 -0.42 0.80 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 362.57 15.07 5.46 5.46 Total: -1.00 -36.33 362.57 -8.02 -44.35 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.99 Total: 0.99 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -3.13 Total: 7.55 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -0.32 Total: -67.59 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.47 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.13 Total: 18.70 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.33 -8.02 -44.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088965375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.306 kcal (2) G-P(sol) polarization free energy of solvation -36.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds