Wall clock time and date at job start Tue Mar 31 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35338 * 125.69865 * 2 1 4 4 N 1.36164 * 107.14569 * 179.97438 * 3 2 1 5 5 C 1.36218 * 133.93088 * 180.02562 * 4 3 2 6 6 C 1.35481 * 120.52158 * 179.97438 * 5 4 3 7 7 N 1.32690 * 122.12166 * 359.83555 * 6 5 4 8 8 C 1.32303 * 121.17664 * 0.42303 * 7 6 5 9 9 C 1.47807 * 120.58350 * 179.80501 * 8 7 6 10 10 O 1.21564 * 119.99718 * 179.72296 * 9 8 7 11 11 N 1.34776 * 120.00452 * 359.72806 * 9 8 7 12 12 C 1.46493 * 120.00089 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.64376 * 323.31175 * 12 11 9 14 14 C 1.55159 * 110.72192 * 86.45178 * 12 11 9 15 15 C 1.54903 * 101.58460 * 153.86303 * 14 12 11 16 16 N 1.47429 * 104.83403 * 322.99305 * 15 14 12 17 17 C 1.36937 * 125.64895 * 203.86397 * 16 15 14 18 18 H 1.08002 * 119.99903 * 161.49833 * 17 16 15 19 19 C 1.38812 * 119.99917 * 341.48960 * 17 16 15 20 20 N 1.31620 * 119.99793 * 157.54413 * 19 17 16 21 21 Si 1.86799 * 120.00197 * 337.54912 * 19 17 16 22 22 H 1.48500 * 109.47046 * 84.53559 * 21 19 17 23 23 H 1.48499 * 109.47121 * 204.53520 * 21 19 17 24 24 H 1.48503 * 109.46914 * 324.53527 * 21 19 17 25 25 C 1.47024 * 108.69993 * 24.12514 * 16 15 14 26 26 H 1.08998 * 109.88127 * 239.52338 * 25 16 15 27 27 C 1.53000 * 109.88206 * 118.36148 * 25 16 15 28 28 C 1.37562 * 106.99203 * 0.02562 * 4 3 2 29 29 N 1.31852 * 108.10722 * 359.97438 * 28 4 3 30 30 H 1.08998 * 109.47387 * 89.99314 * 1 2 3 31 31 H 1.08993 * 109.47418 * 209.99845 * 1 2 3 32 32 H 1.09003 * 109.46797 * 329.99751 * 1 2 3 33 33 H 1.08000 * 126.42670 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.73947 * 359.96293 * 5 4 3 35 35 H 1.08002 * 118.94179 * 180.02562 * 6 5 4 36 36 H 0.97003 * 119.99279 * 359.97438 * 11 9 8 37 37 H 1.09007 * 111.00627 * 35.78727 * 14 12 11 38 38 H 1.09004 * 111.03511 * 271.95737 * 14 12 11 39 39 H 1.09002 * 110.36954 * 204.15307 * 15 14 12 40 40 H 1.09004 * 110.36658 * 81.82598 * 15 14 12 41 41 H 0.96998 * 119.99831 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.47049 * 61.44771 * 27 25 16 43 43 H 1.08992 * 109.47398 * 181.45161 * 27 25 16 44 44 H 1.09007 * 109.46846 * 301.45274 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2967 1.0991 0.0000 4 7 3.5876 0.6658 0.0006 5 6 4.7957 1.2952 0.0013 6 6 5.9451 0.5780 0.0023 7 7 5.9488 -0.7489 0.0058 8 6 4.8187 -1.4370 0.0002 9 6 4.8382 -2.9149 -0.0001 10 8 3.7935 -3.5365 -0.0002 11 7 6.0141 -3.5735 -0.0001 12 6 6.0333 -5.0383 0.0001 13 1 5.2205 -5.4331 0.6098 14 6 5.9504 -5.5887 -1.4482 15 6 6.6475 -6.9639 -1.2987 16 7 7.7400 -6.7307 -0.3366 17 6 8.8824 -7.4782 -0.2296 18 1 9.7456 -7.0753 0.2792 19 6 8.9307 -8.7538 -0.7750 20 7 10.0911 -9.2975 -1.0754 21 14 7.3490 -9.6986 -1.0827 22 1 6.7831 -9.3018 -2.3970 23 1 7.6356 -11.1557 -1.0867 24 1 6.3709 -9.3894 -0.0089 25 6 7.3970 -5.5664 0.4931 26 1 8.1569 -4.7934 0.3794 27 6 7.2928 -5.9859 1.9607 28 6 3.5501 -0.7093 0.0003 29 7 2.2862 -1.0848 0.0002 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9652 2.1269 -0.0004 34 1 4.8376 2.3744 0.0009 35 1 6.8888 1.1032 0.0033 36 1 6.8477 -3.0774 -0.0004 37 1 6.4952 -4.9478 -2.1415 38 1 4.9136 -5.7083 -1.7626 39 1 7.0497 -7.2916 -2.2573 40 1 5.9485 -7.7030 -0.9069 41 1 10.1249 -10.1887 -1.4568 42 1 8.2556 -6.3698 2.2981 43 1 7.0132 -5.1237 2.5661 44 1 6.5355 -6.7631 2.0636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088965375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:45 Heat of formation + Delta-G solvation = 79.190164 kcal Electronic energy + Delta-G solvation = -27729.627929 eV Core-core repulsion = 23876.668419 eV Total energy + Delta-G solvation = -3852.959510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.10625 -41.17149 -39.72970 -39.15911 -35.73351 -35.51164 -34.03673 -32.83980 -32.26757 -31.45254 -30.57416 -29.00681 -26.98047 -25.87201 -25.44026 -24.39553 -23.00195 -22.07623 -21.65742 -21.36844 -19.48792 -19.27332 -18.80471 -17.63987 -17.43471 -17.37375 -16.98624 -16.38481 -16.15821 -15.98251 -15.52554 -15.25217 -15.22064 -14.71432 -14.55327 -14.39588 -14.37273 -14.00836 -13.97868 -13.59191 -13.40291 -13.22844 -13.13439 -12.92200 -12.61039 -12.46961 -12.44172 -12.11744 -12.03769 -11.64025 -11.58813 -11.45414 -11.31790 -10.93975 -10.79784 -10.15847 -9.84520 -9.25472 -9.07639 -8.15780 -5.41987 -1.07541 0.10145 1.20069 1.31579 1.40134 1.47776 1.50561 1.73610 1.85416 2.42744 2.51894 2.74682 2.88504 3.05910 3.18553 3.32302 3.61859 3.66516 3.73748 3.98100 4.07796 4.10901 4.17368 4.24948 4.28944 4.40726 4.53092 4.70133 4.73872 4.80111 4.82074 4.85703 4.87544 4.98464 5.02955 5.04543 5.06607 5.14607 5.34156 5.50050 5.51389 5.70488 5.73663 6.12983 6.23596 6.51489 6.75329 6.75929 7.06180 7.54949 8.10768 9.03770 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.002755 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.664867 B =10159.668663 C =10875.460056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.031 3.969 3 C -0.063 4.063 4 N -0.358 5.358 5 C 0.065 3.935 6 C 0.011 3.989 7 N -0.418 5.418 8 C 0.135 3.865 9 C 0.573 3.427 10 O -0.541 6.541 11 N -0.683 5.683 12 C 0.150 3.850 13 H 0.090 0.910 14 C -0.128 4.128 15 C 0.107 3.893 16 N -0.616 5.616 17 C -0.219 4.219 18 H 0.069 0.931 19 C -0.033 4.033 20 N -0.954 5.954 21 Si 0.934 3.066 22 H -0.273 1.273 23 H -0.309 1.309 24 H -0.273 1.273 25 C 0.153 3.847 26 H 0.061 0.939 27 C -0.149 4.149 28 C 0.167 3.833 29 N -0.492 5.492 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.241 0.759 34 H 0.235 0.765 35 H 0.229 0.771 36 H 0.419 0.581 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.022 0.978 41 H 0.261 0.739 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.333 31.594 2.656 35.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 C -0.196 4.196 4 N -0.032 5.032 5 C -0.060 4.060 6 C -0.130 4.130 7 N -0.134 5.134 8 C -0.029 4.029 9 C 0.357 3.643 10 O -0.416 6.416 11 N -0.335 5.335 12 C 0.044 3.956 13 H 0.108 0.892 14 C -0.168 4.168 15 C -0.018 4.018 16 N -0.342 5.342 17 C -0.347 4.347 18 H 0.087 0.913 19 C -0.227 4.227 20 N -0.601 5.601 21 Si 0.764 3.236 22 H -0.199 1.199 23 H -0.238 1.238 24 H -0.199 1.199 25 C 0.047 3.953 26 H 0.079 0.921 27 C -0.208 4.208 28 C -0.080 4.080 29 N -0.214 5.214 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.127 0.873 33 H 0.257 0.743 34 H 0.251 0.749 35 H 0.245 0.755 36 H 0.257 0.743 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.360 29.938 2.625 33.751 hybrid contribution -0.384 -0.038 -0.185 0.428 sum -15.745 29.899 2.440 33.880 Atomic orbital electron populations 1.20289 0.84410 1.04309 1.03800 1.22012 0.98948 0.87674 1.01512 1.23266 0.79054 1.02759 1.14487 1.43168 1.07972 1.07875 1.44156 1.23784 0.81403 1.03296 0.97521 1.22938 1.00076 0.87891 1.02117 1.68034 1.26445 1.11081 1.07813 1.21601 0.85033 0.93628 1.02589 1.17541 0.84035 0.85420 0.77302 1.90864 1.32929 1.68092 1.49683 1.45601 1.08600 1.06300 1.73047 1.21854 0.97917 0.79024 0.96785 0.89150 1.23051 1.00905 0.95848 0.96962 1.21992 0.89961 0.96409 0.93478 1.44902 1.19323 1.33274 1.36734 1.18515 0.88604 0.95050 1.32556 0.91340 1.25513 0.98550 0.97878 1.00790 1.69940 1.25543 1.17229 1.47374 0.86130 0.81648 0.77010 0.78810 1.19863 1.23804 1.19859 1.21231 0.93372 0.89820 0.90865 0.92133 1.22118 1.01328 1.00958 0.96401 1.22416 0.94277 0.82185 1.09150 1.70507 0.99185 1.31272 1.20429 0.89703 0.91963 0.87280 0.74275 0.74897 0.75483 0.74258 0.89838 0.90034 0.93391 0.96022 0.92959 0.93393 0.90860 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.42 71.23 0.74 -0.15 16 2 C 0.03 0.62 7.07 41.62 0.29 0.91 16 3 C -0.06 -0.81 11.70 83.35 0.98 0.17 16 4 N -0.36 -5.82 2.95 -347.31 -1.02 -6.85 16 5 C 0.07 0.49 11.00 83.37 0.92 1.40 16 6 C 0.01 0.12 11.01 83.93 0.92 1.04 16 7 N -0.42 -8.35 9.67 -181.36 -1.75 -10.10 16 8 C 0.13 3.65 6.97 43.69 0.30 3.96 16 9 C 0.57 18.63 7.81 86.78 0.68 19.30 16 10 O -0.54 -21.65 15.95 -3.92 -0.06 -21.72 16 11 N -0.68 -20.14 5.20 -439.82 -2.29 -22.42 16 12 C 0.15 5.15 2.76 46.18 0.13 5.28 16 13 H 0.09 3.32 7.41 -2.39 -0.02 3.30 16 14 C -0.13 -4.63 6.77 31.98 0.22 -4.41 16 15 C 0.11 4.72 4.69 86.85 0.41 5.13 16 16 N -0.62 -29.46 2.94 -668.25 -1.96 -31.42 16 17 C -0.22 -12.43 10.16 84.03 0.85 -11.58 16 18 H 0.07 4.15 8.06 -2.91 -0.02 4.13 16 19 C -0.03 -1.95 5.43 84.86 0.46 -1.49 16 20 N -0.95 -60.47 13.97 21.65 0.30 -60.17 16 21 Si 0.93 48.20 24.27 68.60 1.66 49.86 16 22 H -0.27 -13.36 6.49 99.48 0.65 -12.72 16 23 H -0.31 -16.14 7.11 99.48 0.71 -15.44 16 24 H -0.27 -13.81 6.66 99.48 0.66 -13.15 16 25 C 0.15 5.84 3.48 45.34 0.16 6.00 16 26 H 0.06 2.19 7.69 -2.39 -0.02 2.17 16 27 C -0.15 -5.39 9.14 71.98 0.66 -4.73 16 28 C 0.17 4.51 7.66 135.58 1.04 5.55 16 29 N -0.49 -15.01 10.74 -177.75 -1.91 -16.92 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.24 0.31 8.06 -2.91 -0.02 0.29 16 34 H 0.23 -1.04 8.06 -2.91 -0.02 -1.06 16 35 H 0.23 0.22 8.06 -2.91 -0.02 0.20 16 36 H 0.42 10.63 7.69 -92.71 -0.71 9.92 16 37 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 38 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 39 H 0.05 2.25 6.67 -2.39 -0.02 2.24 16 40 H 0.02 1.01 5.56 -2.38 -0.01 1.00 16 41 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 42 H 0.05 1.85 8.02 -2.39 -0.02 1.84 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -85.74 362.57 1.94 -83.79 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.22 Total: 9.54 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: 8.76 Total: 26.40 kcal Atomic # 7 Polarization: -139.24 SS G_CDS: -8.63 Total: -147.87 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.06 Total: -21.72 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.66 Total: 49.86 kcal Total: -85.74 1.94 -83.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088965375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.985 kcal (2) G-P(sol) polarization free energy of solvation -85.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds