Wall clock time and date at job start Tue Mar 31 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39966 * 119.94564 * 2 1 4 4 C 1.35761 * 119.35317 * 179.97438 * 3 2 1 5 5 N 1.36320 * 119.15643 * 359.97438 * 4 3 2 6 6 N 1.39901 * 132.15993 * 180.02562 * 5 4 3 7 7 C 1.30699 * 109.52042 * 179.97438 * 6 5 4 8 8 C 1.40645 * 108.72301 * 0.02562 * 7 6 5 9 9 C 1.46587 * 126.53810 * 180.26756 * 8 7 6 10 10 O 1.21711 * 120.00100 * 179.68696 * 9 8 7 11 11 N 1.34782 * 119.99869 * 359.68469 * 9 8 7 12 12 C 1.46493 * 120.00111 * 180.02562 * 11 9 8 13 13 H 1.09007 * 110.64050 * 323.31015 * 12 11 9 14 14 C 1.55155 * 110.72203 * 86.45221 * 12 11 9 15 15 C 1.54907 * 101.58348 * 153.86956 * 14 12 11 16 16 N 1.47429 * 104.83126 * 322.98906 * 15 14 12 17 17 C 1.36929 * 125.65105 * 204.16540 * 16 15 14 18 18 H 1.07998 * 120.00441 * 179.97438 * 17 16 15 19 19 C 1.38813 * 119.99947 * 359.97438 * 17 16 15 20 20 N 1.31615 * 120.00070 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00018 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46757 * 60.00279 * 21 19 17 23 23 H 1.48500 * 109.47217 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47583 * 300.00410 * 21 19 17 25 25 C 1.47024 * 108.69787 * 24.12940 * 16 15 14 26 26 H 1.09004 * 109.88111 * 239.51812 * 25 16 15 27 27 C 1.53001 * 109.88084 * 118.36166 * 25 16 15 28 28 C 1.36590 * 119.72725 * 0.02562 * 5 4 3 29 29 N 1.31502 * 119.94705 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47543 * 269.98435 * 1 2 3 31 31 H 1.08996 * 109.47085 * 29.98365 * 1 2 3 32 32 H 1.09006 * 109.46966 * 149.97966 * 1 2 3 33 33 H 1.07991 * 120.32411 * 0.02562 * 3 2 1 34 34 H 1.07997 * 120.41881 * 180.02562 * 4 3 2 35 35 H 1.07999 * 125.63790 * 180.02562 * 7 6 5 36 36 H 0.97000 * 119.99731 * 0.02562 * 11 9 8 37 37 H 1.09002 * 111.00421 * 271.94257 * 14 12 11 38 38 H 1.08997 * 111.00740 * 35.74920 * 14 12 11 39 39 H 1.08993 * 110.37040 * 81.82931 * 15 14 12 40 40 H 1.09004 * 110.36848 * 204.15348 * 15 14 12 41 41 H 0.97001 * 120.00378 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.46736 * 302.19062 * 27 25 16 43 43 H 1.09005 * 109.47211 * 62.18962 * 27 25 16 44 44 H 1.08999 * 109.46937 * 182.18775 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.2128 0.0000 4 6 3.5632 1.1988 0.0005 5 7 4.2150 0.0015 0.0016 6 7 5.5748 -0.3274 0.0028 7 6 5.7097 -1.6274 0.0040 8 6 4.4314 -2.2139 0.0031 9 6 4.1293 -3.6483 0.0095 10 8 2.9725 -4.0266 0.0136 11 7 5.1327 -4.5483 0.0107 12 6 4.8309 -5.9818 0.0165 13 1 3.9525 -6.1870 0.6285 14 6 4.6270 -6.5057 -1.4296 15 6 5.0064 -7.9997 -1.2755 16 7 6.1253 -8.0078 -0.3155 17 6 7.0798 -8.9839 -0.2106 18 1 7.8624 -8.8968 0.5286 19 6 7.0417 -10.0855 -1.0544 20 7 6.0884 -10.1914 -1.9556 21 14 8.3443 -11.4168 -0.9119 22 1 8.3021 -12.0067 0.4503 23 1 8.0818 -12.4761 -1.9189 24 1 9.6849 -10.8257 -1.1539 25 6 6.0468 -6.7938 0.5101 26 1 6.9574 -6.2062 0.3927 27 6 5.8561 -7.1752 1.9795 28 6 3.4971 -1.1605 0.0016 29 7 2.1634 -1.1394 -0.0005 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3633 0.8901 -0.5136 32 1 -0.3633 -0.8899 -0.5142 33 1 1.6701 2.1506 0.0004 34 1 4.1196 2.1244 0.0010 35 1 6.6477 -2.1627 0.0055 36 1 6.0546 -4.2467 0.0078 37 1 3.5884 -6.3966 -1.7419 38 1 5.2970 -6.0016 -2.1260 39 1 4.1634 -8.5664 -0.8804 40 1 5.3255 -8.4108 -2.2333 41 1 6.0619 -10.9610 -2.5456 42 1 4.9543 -7.7785 2.0841 43 1 6.7183 -7.7481 2.3210 44 1 5.7599 -6.2707 2.5800 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088986890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:10 Heat of formation + Delta-G solvation = 113.477719 kcal Electronic energy + Delta-G solvation = -27550.082818 eV Core-core repulsion = 23698.610129 eV Total energy + Delta-G solvation = -3851.472690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.73178 -39.41397 -38.53314 -37.27348 -34.47553 -33.85363 -32.54293 -31.93253 -30.34227 -29.97810 -28.76313 -28.26282 -25.18976 -24.17179 -23.91538 -22.92040 -22.62418 -20.46218 -19.95148 -19.66021 -18.60518 -17.55086 -16.71192 -16.66862 -16.52484 -15.80884 -15.52788 -14.70460 -14.60927 -14.34204 -14.11698 -13.98935 -13.81275 -13.72400 -13.26648 -13.09790 -12.72929 -12.67718 -12.18931 -12.05186 -11.91618 -11.78304 -11.52240 -11.45896 -11.06734 -10.79993 -10.76762 -10.40267 -10.29220 -10.09297 -10.06971 -9.86135 -9.66941 -9.55095 -9.42118 -8.61320 -8.51093 -8.16430 -6.81441 -5.59840 -3.02654 0.06109 0.44155 1.60866 1.95224 2.86907 3.37241 3.42853 3.44311 3.48127 3.49290 3.72512 3.81493 3.88933 4.35121 4.53241 4.60467 4.75548 4.82088 4.95382 5.12375 5.17949 5.30458 5.36170 5.48278 5.53227 5.64421 5.72226 5.74357 5.89917 5.95028 6.09169 6.21797 6.35635 6.41513 6.47462 6.66667 6.72127 6.84556 6.96715 6.99225 7.24266 7.35459 7.60209 7.68083 7.91762 7.95850 8.41131 8.69297 9.26130 9.87181 10.51829 11.43236 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.002467 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.690066 B =11346.103999 C =11816.545504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.207 3.793 3 C -0.221 4.221 4 C 0.166 3.834 5 N -0.312 5.312 6 N -0.313 5.313 7 C 0.129 3.871 8 C -0.283 4.283 9 C 0.593 3.407 10 O -0.531 6.531 11 N -0.715 5.715 12 C 0.141 3.859 13 H 0.091 0.909 14 C -0.153 4.153 15 C 0.153 3.847 16 N -0.595 5.595 17 C -0.219 4.219 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.156 3.844 26 H 0.036 0.964 27 C -0.155 4.155 28 C 0.322 3.678 29 N -0.441 5.441 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.170 0.830 34 H 0.183 0.817 35 H 0.206 0.794 36 H 0.393 0.607 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.014 0.986 40 H 0.108 0.892 41 H 0.252 0.748 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 26.765 4.035 28.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.044 3.956 3 C -0.244 4.244 4 C 0.031 3.969 5 N -0.081 5.081 6 N -0.135 5.135 7 C -0.052 4.052 8 C -0.299 4.299 9 C 0.380 3.620 10 O -0.408 6.408 11 N -0.366 5.366 12 C 0.036 3.964 13 H 0.109 0.891 14 C -0.192 4.192 15 C 0.028 3.972 16 N -0.320 5.320 17 C -0.348 4.348 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.569 5.569 21 Si 0.744 3.256 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.047 3.953 26 H 0.053 0.947 27 C -0.215 4.215 28 C 0.090 3.910 29 N -0.153 5.153 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.188 0.812 34 H 0.201 0.799 35 H 0.223 0.777 36 H 0.227 0.773 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.032 0.968 40 H 0.126 0.874 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.631 26.402 3.924 27.761 hybrid contribution 1.241 -0.441 0.147 1.325 sum -6.391 25.961 4.072 27.044 Atomic orbital electron populations 1.20862 0.86712 1.04761 1.04293 1.22130 0.98311 0.87392 0.87771 1.21769 0.92441 1.01390 1.08849 1.22106 0.92687 0.88490 0.93621 1.47039 1.07792 1.06415 1.46890 1.77581 0.88656 1.15931 1.31326 1.24194 0.98456 0.90617 0.91927 1.19559 0.90412 0.93533 1.26400 1.16707 0.85325 0.83408 0.76602 1.90829 1.19650 1.80420 1.49911 1.45794 1.08568 1.06519 1.75722 1.22082 0.98565 0.77573 0.98174 0.89095 1.23393 1.00517 1.00179 0.95149 1.21947 0.88952 0.88982 0.97323 1.44485 1.29891 1.20259 1.37404 1.18973 1.03326 0.97678 1.14777 0.90543 1.24783 0.98682 0.98533 0.98646 1.69793 1.33607 1.30232 1.23317 0.86170 0.80882 0.81394 0.77129 1.21270 1.21641 1.21235 1.20984 0.94038 0.89382 0.90854 0.94671 1.22240 1.01954 0.99779 0.97482 1.20361 0.87885 0.86205 0.96538 1.68199 1.03702 1.28227 1.15219 0.88967 0.89568 0.89135 0.81244 0.79942 0.77747 0.77308 0.91977 0.92076 0.96810 0.87420 0.93691 0.92933 0.92809 0.94306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.19 36.00 0.37 -0.21 16 2 C 0.21 1.80 6.83 -82.09 -0.56 1.24 16 3 C -0.22 -1.20 9.72 -39.82 -0.39 -1.59 16 4 C 0.17 1.15 11.29 -16.44 -0.19 0.97 16 5 N -0.31 -3.60 3.86 -11.97 -0.05 -3.65 16 6 N -0.31 -3.75 12.58 30.76 0.39 -3.37 16 7 C 0.13 1.50 11.44 -17.13 -0.20 1.30 16 8 C -0.28 -4.20 6.17 -104.65 -0.65 -4.84 16 9 C 0.59 10.36 7.78 -12.89 -0.10 10.26 16 10 O -0.53 -11.32 16.46 5.18 0.09 -11.24 16 11 N -0.72 -11.47 5.19 -53.37 -0.28 -11.75 16 12 C 0.14 2.70 2.76 -66.10 -0.18 2.52 16 13 H 0.09 1.89 7.41 -51.93 -0.38 1.50 16 14 C -0.15 -3.19 6.77 -24.58 -0.17 -3.36 16 15 C 0.15 3.83 5.89 -2.53 -0.01 3.82 16 16 N -0.60 -15.08 3.13 -162.58 -0.51 -15.59 16 17 C -0.22 -6.02 9.89 -15.06 -0.15 -6.17 16 18 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 19 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 20 N -0.92 -27.01 10.09 55.49 0.56 -26.45 16 21 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.16 3.19 3.48 -66.96 -0.23 2.96 16 26 H 0.04 0.70 7.69 -51.93 -0.40 0.30 16 27 C -0.15 -2.96 9.14 37.16 0.34 -2.62 16 28 C 0.32 4.63 7.74 -155.84 -1.21 3.42 16 29 N -0.44 -6.12 10.18 -8.25 -0.08 -6.20 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.19 8.09 -51.93 -0.42 -0.23 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.17 0.17 8.06 -52.49 -0.42 -0.26 16 34 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.21 1.58 7.46 -52.49 -0.39 1.18 16 36 H 0.39 5.09 7.23 -40.82 -0.30 4.80 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.11 3.00 5.87 -51.93 -0.30 2.70 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.05 1.05 8.05 -51.93 -0.42 0.63 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 367.98 15.07 5.55 5.55 Total: -1.00 -37.26 367.98 -8.74 -46.01 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.96 Total: 2.31 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -3.42 Total: 7.30 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: 0.03 Total: -67.00 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.26 -8.74 -46.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088986890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.483 kcal (2) G-P(sol) polarization free energy of solvation -37.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds