Wall clock time and date at job start Tue Mar 31 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.33707 * 126.12598 * 2 1 4 4 H 0.97000 * 124.97593 * 0.02562 * 3 2 1 5 5 N 1.39880 * 110.05411 * 180.02562 * 3 2 1 6 6 C 1.31913 * 109.17677 * 359.97438 * 5 3 2 7 7 N 1.34415 * 134.12583 * 180.02562 * 6 5 3 8 8 C 1.30498 * 121.56203 * 180.02562 * 7 6 5 9 9 C 1.40810 * 122.37509 * 359.97438 * 8 7 6 10 10 C 1.47514 * 119.91908 * 180.02562 * 9 8 7 11 11 O 1.21599 * 120.00215 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00129 * 359.97438 * 10 9 8 13 13 C 1.46495 * 120.00473 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.77895 * 328.23772 * 13 12 10 15 15 C 1.55155 * 110.72438 * 91.47559 * 13 12 10 16 16 C 1.54907 * 101.58383 * 153.86514 * 15 13 12 17 17 N 1.47420 * 104.83524 * 322.99460 * 16 15 13 18 18 C 1.36935 * 125.65209 * 204.16221 * 17 16 15 19 19 H 1.08004 * 120.00235 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99734 * 359.95746 * 18 17 16 21 21 N 1.31614 * 120.00076 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00049 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47318 * 89.99750 * 22 20 18 24 24 H 1.48497 * 109.47441 * 210.00417 * 22 20 18 25 25 H 1.48510 * 109.47008 * 330.00084 * 22 20 18 26 26 C 1.47026 * 108.70428 * 24.12518 * 17 16 15 27 27 H 1.08998 * 109.88379 * 239.52492 * 26 17 16 28 28 C 1.53003 * 109.88297 * 118.35753 * 26 17 16 29 29 C 1.38872 * 120.16378 * 0.29217 * 9 8 7 30 30 C 1.38541 * 126.11778 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.46785 * 89.97411 * 1 2 3 32 32 H 1.09000 * 109.47069 * 209.97369 * 1 2 3 33 33 H 1.08998 * 109.46478 * 329.97225 * 1 2 3 34 34 H 1.08006 * 118.81449 * 180.02562 * 8 7 6 35 35 H 0.97006 * 119.99621 * 0.02562 * 12 10 9 36 36 H 1.09001 * 111.00015 * 35.79259 * 15 13 12 37 37 H 1.09000 * 111.00890 * 271.94477 * 15 13 12 38 38 H 1.08997 * 110.36783 * 204.15179 * 16 15 13 39 39 H 1.08999 * 110.36448 * 81.82920 * 16 15 13 40 40 H 0.97002 * 119.99964 * 180.02562 * 21 20 18 41 41 H 1.08994 * 109.46761 * 61.45852 * 28 26 17 42 42 H 1.08996 * 109.46781 * 181.45694 * 28 26 17 43 43 H 1.09001 * 109.47129 * 301.45469 * 28 26 17 44 44 H 1.08004 * 121.04724 * 179.73176 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2954 1.0800 0.0000 4 1 1.9812 1.9977 0.0004 5 7 3.6395 0.6927 -0.0006 6 6 3.7110 -0.6245 -0.0004 7 7 4.7251 -1.5067 -0.0003 8 6 4.5106 -2.7939 -0.0006 9 6 3.2137 -3.3422 -0.0005 10 6 3.0338 -4.8063 -0.0003 11 8 1.9145 -5.2814 -0.0007 12 7 4.1101 -5.6175 -0.0007 13 6 3.9316 -7.0715 -0.0011 14 1 3.0246 -7.3499 0.5354 15 6 3.9015 -7.6207 -1.4519 16 6 4.3912 -9.0755 -1.2441 17 7 5.4173 -8.9814 -0.1898 18 6 6.4382 -9.8714 0.0121 19 1 7.1421 -9.7127 0.8158 20 6 6.5682 -10.9780 -0.8159 21 7 5.7105 -11.1713 -1.7954 22 14 7.9612 -12.1918 -0.5410 23 1 7.5141 -13.2548 0.3944 24 1 8.3476 -12.8038 -1.8377 25 1 9.1295 -11.4815 0.0388 26 6 5.1636 -7.7731 0.6086 27 1 6.0278 -7.1105 0.5630 28 6 4.8766 -8.1597 2.0609 29 6 2.1034 -2.5080 -0.0062 30 6 2.3237 -1.1191 -0.0005 31 1 -0.3633 0.0005 -1.0276 32 1 -0.3633 -0.8902 0.5134 33 1 -0.3632 0.8898 0.5143 34 1 5.3586 -3.4629 -0.0001 35 1 5.0031 -5.2385 -0.0008 36 1 4.5860 -7.0660 -2.0938 37 1 2.8891 -7.6030 -1.8555 38 1 4.8273 -9.4641 -2.1643 39 1 3.5676 -9.7098 -0.9162 40 1 5.8012 -11.9448 -2.3738 41 1 5.7458 -8.6660 2.4805 42 1 4.6642 -7.2616 2.6407 43 1 4.0154 -8.8270 2.0958 44 1 1.1023 -2.9132 -0.0106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089040103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:53 Heat of formation + Delta-G solvation = 98.408787 kcal Electronic energy + Delta-G solvation = -27307.023919 eV Core-core repulsion = 23454.897791 eV Total energy + Delta-G solvation = -3852.126128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.99246 -39.92104 -38.22616 -37.33087 -34.10125 -33.82472 -32.17192 -31.90749 -31.10154 -30.32716 -28.72097 -27.72109 -25.41422 -24.69968 -23.98099 -23.32342 -20.97401 -20.49728 -20.16241 -19.71477 -18.45095 -17.80853 -17.12189 -16.77831 -16.15554 -15.97894 -15.39903 -14.76456 -14.72210 -14.59696 -14.00244 -13.83083 -13.76709 -13.70463 -13.35872 -13.28736 -12.93739 -12.77312 -12.67271 -12.11462 -11.93532 -11.55866 -11.50965 -11.11926 -10.93064 -10.84015 -10.81550 -10.54572 -10.43302 -10.08112 -9.96581 -9.72187 -9.55238 -9.50197 -9.35816 -8.69956 -8.61985 -8.32098 -6.85600 -5.63734 -3.06428 -0.04261 0.94340 1.83378 1.99671 2.96837 3.23119 3.41393 3.46498 3.48250 3.54693 3.73567 3.77249 4.19937 4.42041 4.50020 4.54292 4.75440 4.79035 4.83860 4.97998 5.15597 5.26922 5.33377 5.44284 5.57129 5.65134 5.76033 5.80695 5.86450 6.09823 6.15605 6.27507 6.33975 6.37412 6.45861 6.55502 6.63325 6.74073 6.89513 6.98327 7.13199 7.53738 7.64675 7.66783 7.72223 7.87269 8.34968 8.39057 9.22487 9.83454 10.47173 11.39567 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.029146 B = 0.002322 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.453971 B =12055.598451 C =12439.042304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.153 3.847 3 N -0.411 5.411 4 H 0.447 0.553 5 N -0.292 5.292 6 C 0.284 3.716 7 N -0.476 5.476 8 C 0.224 3.776 9 C -0.239 4.239 10 C 0.569 3.431 11 O -0.544 6.544 12 N -0.710 5.710 13 C 0.135 3.865 14 H 0.096 0.904 15 C -0.153 4.153 16 C 0.152 3.848 17 N -0.595 5.595 18 C -0.219 4.219 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.154 3.846 27 H 0.037 0.963 28 C -0.155 4.155 29 C 0.087 3.913 30 C -0.273 4.273 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.168 0.832 35 H 0.397 0.603 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.014 0.986 40 H 0.252 0.748 41 H 0.054 0.946 42 H 0.038 0.962 43 H 0.051 0.949 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.300 23.750 3.394 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.010 3.990 3 N -0.111 5.111 4 H 0.293 0.707 5 N -0.123 5.123 6 C 0.022 3.978 7 N -0.188 5.188 8 C 0.038 3.962 9 C -0.246 4.246 10 C 0.355 3.645 11 O -0.423 6.423 12 N -0.360 5.360 13 C 0.031 3.969 14 H 0.114 0.886 15 C -0.193 4.193 16 C 0.027 3.973 17 N -0.320 5.320 18 C -0.347 4.347 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.744 3.256 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.046 3.954 27 H 0.055 0.945 28 C -0.215 4.215 29 C 0.058 3.942 30 C -0.285 4.285 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.185 0.815 35 H 0.232 0.768 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.127 0.873 39 H 0.032 0.968 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.444 24.843 3.295 27.150 hybrid contribution -0.248 -1.008 0.200 1.057 sum -10.691 23.835 3.495 26.356 Atomic orbital electron populations 1.20714 0.85426 1.05275 1.04732 1.21445 0.94723 0.87147 0.95716 1.46416 1.04589 1.08982 1.51132 0.70677 1.77784 0.91730 1.10373 1.32394 1.21424 0.88696 0.91468 0.96221 1.67369 1.31493 1.01762 1.18171 1.23091 0.95518 0.90404 0.87171 1.20571 0.94873 0.94591 1.14579 1.17776 0.84929 0.85321 0.76440 1.90770 1.23997 1.76740 1.50782 1.45974 1.08504 1.07322 1.74201 1.22189 0.99579 0.77053 0.98089 0.88616 1.23409 1.00573 1.00390 0.94927 1.21952 0.90381 0.89247 0.95678 1.44486 1.30977 1.23954 1.32612 1.19023 1.03003 1.00920 1.11787 0.90439 1.24783 0.99069 0.98596 0.98181 1.69792 1.37249 1.29630 1.20279 0.86088 0.81400 0.81159 0.76927 1.21692 1.21710 1.20711 1.21013 0.93427 0.90033 0.90936 0.94537 1.22239 1.01817 0.99837 0.97592 1.21106 0.99552 0.89152 0.84362 1.20057 0.94808 0.94307 1.19279 0.88626 0.88365 0.89891 0.81490 0.76764 0.91880 0.91972 0.87326 0.96771 0.93720 0.92704 0.94275 0.92954 0.83245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.24 10.45 36.01 0.38 0.14 16 2 C 0.15 1.03 7.28 -81.66 -0.59 0.44 16 3 N -0.41 -2.86 7.16 33.86 0.24 -2.62 16 4 H 0.45 1.19 8.96 -182.76 -1.64 -0.44 16 5 N -0.29 -3.54 12.68 31.97 0.41 -3.13 16 6 C 0.28 3.75 8.60 -156.39 -1.35 2.41 16 7 N -0.48 -6.51 10.42 -11.02 -0.11 -6.62 16 8 C 0.22 2.60 10.64 -17.15 -0.18 2.42 16 9 C -0.24 -2.89 5.88 -104.91 -0.62 -3.51 16 10 C 0.57 8.25 7.76 -12.48 -0.10 8.15 16 11 O -0.54 -9.58 15.99 5.28 0.08 -9.50 16 12 N -0.71 -10.08 5.13 -53.08 -0.27 -10.35 16 13 C 0.14 2.39 2.84 -66.10 -0.19 2.20 16 14 H 0.10 1.81 7.26 -51.93 -0.38 1.43 16 15 C -0.15 -2.97 6.77 -24.58 -0.17 -3.13 16 16 C 0.15 3.65 5.89 -2.53 -0.01 3.64 16 17 N -0.60 -14.57 3.13 -162.57 -0.51 -15.08 16 18 C -0.22 -5.89 9.87 -15.06 -0.15 -6.03 16 19 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 20 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -26.46 10.09 55.49 0.56 -25.90 16 22 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.15 3.02 3.48 -66.95 -0.23 2.78 16 27 H 0.04 0.69 7.72 -51.93 -0.40 0.29 16 28 C -0.16 -2.84 9.14 37.16 0.34 -2.50 16 29 C 0.09 0.94 9.75 -38.45 -0.37 0.57 16 30 C -0.27 -2.85 6.26 -105.21 -0.66 -3.51 16 31 H 0.10 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 34 H 0.17 1.48 6.30 -52.48 -0.33 1.15 16 35 H 0.40 4.63 6.34 -40.82 -0.26 4.37 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.11 2.93 5.87 -51.93 -0.30 2.62 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.05 1.03 8.03 -51.93 -0.42 0.62 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.15 1.39 7.67 -52.48 -0.40 0.99 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -35.72 364.98 -10.18 -45.90 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.06 Total: 1.35 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -4.00 Total: 3.66 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: 0.31 Total: -63.70 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.08 Total: -9.50 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.72 -10.18 -45.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089040103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.313 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds