Wall clock time and date at job start Tue Mar 31 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30708 * 125.63327 * 2 1 4 4 N 1.39910 * 109.51662 * 180.02562 * 3 2 1 5 5 C 1.36315 * 132.16237 * 180.02562 * 4 3 2 6 6 C 1.35760 * 119.15084 * 179.21493 * 5 4 3 7 7 C 1.39963 * 119.35659 * 0.63071 * 6 5 4 8 8 N 1.31503 * 120.10820 * 359.58847 * 7 6 5 9 9 C 1.33378 * 120.85015 * 0.02562 * 8 7 6 10 10 C 1.40637 * 125.63871 * 180.02562 * 2 1 3 11 11 C 1.46581 * 126.53777 * 359.96602 * 10 2 1 12 12 O 1.21721 * 120.00226 * 90.02759 * 11 10 2 13 13 N 1.34776 * 120.00405 * 270.02528 * 11 10 2 14 14 C 1.46498 * 120.00395 * 180.02562 * 13 11 10 15 15 H 1.08996 * 110.78198 * 328.23771 * 14 13 11 16 16 C 1.55155 * 110.72040 * 91.47939 * 14 13 11 17 17 C 1.54910 * 101.58186 * 153.86592 * 16 14 13 18 18 N 1.47426 * 104.83209 * 322.98941 * 17 16 14 19 19 C 1.36936 * 125.64452 * 204.14875 * 18 17 16 20 20 H 1.08004 * 119.99775 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00669 * 0.02562 * 19 18 17 22 22 N 1.31624 * 119.99367 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00450 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46957 * 60.00511 * 23 21 19 25 25 H 1.48497 * 109.47530 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47650 * 300.00668 * 23 21 19 27 27 C 1.47015 * 108.70225 * 24.12927 * 18 17 16 28 28 H 1.09004 * 109.88121 * 239.52440 * 27 18 17 29 29 C 1.53007 * 109.88376 * 118.51318 * 27 18 17 30 30 H 1.08997 * 109.47132 * 269.96607 * 1 2 3 31 31 H 1.09000 * 109.46853 * 29.96267 * 1 2 3 32 32 H 1.08994 * 109.46937 * 149.95939 * 1 2 3 33 33 H 1.07989 * 120.42280 * 359.94797 * 5 4 3 34 34 H 1.08000 * 120.32346 * 180.21807 * 6 5 4 35 35 H 1.07997 * 119.94646 * 179.56695 * 7 6 5 36 36 H 0.97006 * 120.00125 * 359.97438 * 13 11 10 37 37 H 1.08999 * 111.00406 * 35.79204 * 16 14 13 38 38 H 1.09005 * 111.00498 * 271.93719 * 16 14 13 39 39 H 1.08998 * 110.36709 * 204.15043 * 17 16 14 40 40 H 1.09005 * 110.36466 * 81.82577 * 17 16 14 41 41 H 0.97005 * 119.99605 * 179.97438 * 22 21 19 42 42 H 1.08994 * 109.46997 * 61.45311 * 29 27 18 43 43 H 1.08998 * 109.46806 * 181.44978 * 29 27 18 44 44 H 1.08997 * 109.46615 * 301.45041 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2685 1.0623 0.0000 4 7 3.6127 0.6740 -0.0006 5 6 4.7722 1.3907 -0.0004 6 6 5.9580 0.7299 0.0151 7 6 5.9637 -0.6697 0.0171 8 7 4.8288 -1.3339 0.0122 9 6 3.6601 -0.6912 0.0048 10 6 2.3265 -1.1430 -0.0005 11 6 1.8778 -2.5384 -0.0004 12 8 1.6915 -3.1179 -1.0545 13 7 1.6716 -3.1800 1.1667 14 6 1.2237 -4.5748 1.1668 15 1 0.5949 -4.7791 0.3003 16 6 2.4372 -5.5410 1.2046 17 6 1.8155 -6.7953 1.8679 18 7 0.8782 -6.2645 2.8745 19 6 0.4532 -6.9254 3.9960 20 1 -0.2383 -6.4480 4.6745 21 6 0.9111 -8.2087 4.2609 22 7 1.7542 -8.7902 3.4341 23 14 0.3319 -9.1098 5.7911 24 1 -1.1452 -9.2576 5.7492 25 1 0.9628 -10.4531 5.8432 26 1 0.7178 -8.3351 6.9978 27 6 0.4758 -4.9081 2.4749 28 1 0.7523 -4.1954 3.2520 29 6 -1.0355 -4.8615 2.2404 30 1 -0.3633 -0.0006 1.0276 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3633 -0.8896 -0.5144 33 1 4.7477 2.4703 -0.0005 34 1 6.8881 1.2789 0.0191 35 1 6.9016 -1.2050 0.0223 36 1 1.8205 -2.7184 2.0069 37 1 3.2420 -5.1337 1.8165 38 1 2.7893 -5.7655 0.1977 39 1 2.5897 -7.3933 2.3485 40 1 1.2803 -7.3901 1.1276 41 1 2.0745 -9.6869 3.6194 42 1 -1.5546 -5.1095 3.1661 43 1 -1.3226 -3.8601 1.9198 44 1 -1.3056 -5.5818 1.4681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089047670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:14 Heat of formation + Delta-G solvation = 113.650467 kcal Electronic energy + Delta-G solvation = -27975.066129 eV Core-core repulsion = 24123.600930 eV Total energy + Delta-G solvation = -3851.465199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70606 -39.46428 -38.43104 -37.30541 -34.49795 -33.84040 -32.45180 -31.94571 -30.33501 -29.90324 -28.75877 -28.26505 -25.09554 -24.86892 -23.94360 -23.52404 -21.52476 -20.34130 -20.02497 -19.60675 -18.41811 -17.71976 -17.07424 -16.74625 -16.48455 -15.91620 -15.68524 -14.79077 -14.69442 -14.10513 -13.92048 -13.80912 -13.79215 -13.54786 -13.30472 -13.13899 -12.70852 -12.65291 -12.58562 -12.07311 -11.85906 -11.55368 -11.48534 -11.41286 -11.07833 -10.80819 -10.78514 -10.47163 -10.34363 -10.16737 -10.08559 -9.75380 -9.68861 -9.63929 -9.48886 -8.61942 -8.47703 -8.20125 -6.82191 -5.60645 -3.03501 0.11650 0.47662 1.62465 2.11891 2.79176 3.02017 3.42498 3.45626 3.47029 3.48135 3.53128 3.85089 3.97938 4.44620 4.52333 4.57006 4.77459 4.95929 5.13356 5.20194 5.32386 5.37342 5.42444 5.47728 5.60188 5.62836 5.64813 5.72213 5.91898 5.98990 6.18841 6.21691 6.34381 6.39302 6.44843 6.63377 6.70138 6.82747 6.94517 7.07446 7.20812 7.27931 7.58856 7.67159 7.87765 7.91502 8.40198 8.56256 9.25322 9.86324 10.50928 11.42404 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.002925 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.659878 B = 9570.082278 C =10269.739100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.158 3.842 3 N -0.313 5.313 4 N -0.307 5.307 5 C 0.167 3.833 6 C -0.227 4.227 7 C 0.185 3.815 8 N -0.456 5.456 9 C 0.296 3.704 10 C -0.273 4.273 11 C 0.607 3.393 12 O -0.536 6.536 13 N -0.703 5.703 14 C 0.135 3.865 15 H 0.095 0.905 16 C -0.152 4.152 17 C 0.153 3.847 18 N -0.595 5.595 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.155 3.845 28 H 0.035 0.965 29 C -0.154 4.154 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.182 0.818 34 H 0.170 0.830 35 H 0.184 0.816 36 H 0.397 0.603 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.014 0.986 41 H 0.252 0.748 42 H 0.053 0.947 43 H 0.038 0.962 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.115 22.939 -6.479 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.002 4.002 3 N -0.138 5.138 4 N -0.075 5.075 5 C 0.031 3.969 6 C -0.251 4.251 7 C 0.002 3.998 8 N -0.167 5.167 9 C 0.066 3.934 10 C -0.289 4.289 11 C 0.391 3.609 12 O -0.413 6.413 13 N -0.353 5.353 14 C 0.031 3.969 15 H 0.113 0.887 16 C -0.192 4.192 17 C 0.028 3.972 18 N -0.320 5.320 19 C -0.348 4.348 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.744 3.256 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.047 3.953 28 H 0.052 0.948 29 C -0.214 4.214 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.199 0.801 34 H 0.188 0.812 35 H 0.201 0.799 36 H 0.231 0.769 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.126 0.874 40 H 0.032 0.968 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.667 22.618 -7.128 24.634 hybrid contribution 0.044 -0.112 1.151 1.157 sum 6.711 22.506 -5.977 24.234 Atomic orbital electron populations 1.20423 0.84752 1.04617 1.04269 1.22421 0.97328 0.88279 0.92212 1.77525 0.82355 1.21238 1.32643 1.46853 1.06672 1.07131 1.46859 1.22113 0.81698 0.99553 0.93562 1.21888 0.98157 0.96368 1.08653 1.23550 0.96615 0.91557 0.88075 1.68207 0.96150 1.37291 1.15025 1.20328 0.93777 0.80503 0.98774 1.19372 0.88792 0.95262 1.25508 1.16710 0.76627 0.83605 0.83956 1.90802 1.51513 1.67567 1.31415 1.46030 1.67611 1.13720 1.07901 1.22166 0.96672 0.78923 0.99188 0.88748 1.23387 0.96936 0.98357 1.00478 1.21950 0.94006 0.91335 0.89891 1.44483 1.51676 1.11454 1.24434 1.18976 1.21668 0.96425 0.97732 0.90559 1.24780 0.99878 0.97081 0.98871 1.69799 1.35617 1.14631 1.36878 0.86167 0.78021 0.78939 0.82431 1.21261 1.21624 1.21249 1.20994 0.92417 0.89472 0.92417 0.94789 1.22231 0.98162 0.99342 1.01657 0.89030 0.89770 0.89228 0.80116 0.81216 0.79911 0.76904 0.91989 0.92000 0.87387 0.96792 0.93691 0.92777 0.94296 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.26 36.01 0.37 -0.43 16 2 C 0.16 2.06 7.22 -82.16 -0.59 1.47 16 3 N -0.31 -3.99 12.58 33.80 0.43 -3.56 16 4 N -0.31 -3.60 3.86 -11.97 -0.05 -3.64 16 5 C 0.17 1.15 11.29 -16.45 -0.19 0.96 16 6 C -0.23 -1.11 10.05 -39.82 -0.40 -1.51 16 7 C 0.19 1.42 11.28 -17.05 -0.19 1.23 16 8 N -0.46 -5.99 10.47 -12.00 -0.13 -6.11 16 9 C 0.30 4.20 7.90 -155.83 -1.23 2.97 16 10 C -0.27 -4.18 5.91 -104.66 -0.62 -4.80 16 11 C 0.61 10.66 7.28 -12.90 -0.09 10.56 16 12 O -0.54 -11.34 16.76 5.17 0.09 -11.25 16 13 N -0.70 -11.71 5.17 -53.36 -0.28 -11.98 16 14 C 0.13 2.60 2.85 -66.10 -0.19 2.42 16 15 H 0.09 1.93 7.26 -51.93 -0.38 1.55 16 16 C -0.15 -3.19 6.77 -24.58 -0.17 -3.36 16 17 C 0.15 3.83 5.89 -2.53 -0.01 3.82 16 18 N -0.60 -15.12 3.13 -162.57 -0.51 -15.63 16 19 C -0.22 -6.04 9.87 -15.06 -0.15 -6.19 16 20 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 21 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -26.94 10.09 55.49 0.56 -26.38 16 23 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.16 3.20 3.47 -66.95 -0.23 2.97 16 28 H 0.03 0.69 7.72 -51.93 -0.40 0.29 16 29 C -0.15 -2.91 9.15 37.16 0.34 -2.57 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.93 7.97 -51.93 -0.41 0.52 16 33 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.17 0.10 8.06 -52.49 -0.42 -0.32 16 35 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.40 5.88 8.35 -40.82 -0.34 5.54 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.11 3.01 5.87 -51.93 -0.30 2.71 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.05 1.05 8.02 -51.93 -0.42 0.63 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 370.09 15.07 5.58 5.58 Total: -1.00 -36.61 370.09 -8.81 -45.42 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.03 Total: 3.38 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -3.45 Total: 7.14 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: 0.03 Total: -67.31 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.61 -8.81 -45.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089047670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.069 kcal (2) G-P(sol) polarization free energy of solvation -36.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds