Wall clock time and date at job start Tue Mar 31 2020 04:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99912 * 2 1 4 4 H 1.48495 * 109.46750 * 269.99591 * 3 2 1 5 5 H 1.48495 * 109.47184 * 29.99845 * 3 2 1 6 6 H 1.48497 * 109.46825 * 149.99648 * 3 2 1 7 7 C 1.38808 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00200 * 163.08274 * 7 2 1 9 9 N 1.36946 * 119.99722 * 343.09316 * 7 2 1 10 10 C 1.46928 * 120.62924 * 151.83165 * 9 7 2 11 11 C 1.53194 * 108.77361 * 126.36565 * 10 9 7 12 12 C 1.53039 * 109.31174 * 54.63194 * 11 10 9 13 13 H 1.08998 * 109.46168 * 58.64164 * 12 11 10 14 14 N 1.46506 * 109.45647 * 178.61235 * 12 11 10 15 15 C 1.34771 * 119.99845 * 275.03108 * 14 12 11 16 16 O 1.21615 * 120.00390 * 359.97438 * 15 14 12 17 17 C 1.47383 * 119.99962 * 180.02562 * 15 14 12 18 18 C 1.39324 * 120.33983 * 0.02562 * 17 15 14 19 19 C 1.38275 * 120.19684 * 179.97438 * 18 17 15 20 20 C 1.38056 * 120.88384 * 0.02562 * 19 18 17 21 21 C 1.38976 * 120.27100 * 359.97438 * 20 19 18 22 22 N 1.37800 * 133.37748 * 180.02562 * 21 20 19 23 23 H 0.96999 * 125.07034 * 359.95495 * 22 21 20 24 24 C 1.36540 * 109.85690 * 179.97438 * 22 21 20 25 25 C 1.34550 * 109.89664 * 359.97438 * 24 22 21 26 26 C 1.40666 * 119.52020 * 359.97438 * 21 20 19 27 27 C 1.53036 * 109.53009 * 298.62342 * 12 11 10 28 28 H 1.08996 * 109.49775 * 181.32525 * 27 12 11 29 29 O 1.42899 * 109.49859 * 301.42548 * 27 12 11 30 30 C 1.46928 * 120.62852 * 331.80060 * 9 7 2 31 31 H 0.97003 * 119.99908 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.58966 * 6.57482 * 10 9 7 33 33 H 1.08998 * 109.57994 * 246.15088 * 10 9 7 34 34 H 1.09001 * 109.49646 * 294.68138 * 11 10 9 35 35 H 1.09002 * 109.49104 * 174.58262 * 11 10 9 36 36 H 0.96995 * 119.99826 * 95.02861 * 14 12 11 37 37 H 1.07992 * 119.89978 * 359.97144 * 18 17 15 38 38 H 1.07996 * 119.55929 * 180.02562 * 19 18 17 39 39 H 1.08001 * 119.86413 * 180.02562 * 20 19 18 40 40 H 1.07997 * 125.05328 * 180.26811 * 24 22 21 41 41 H 1.07997 * 126.49438 * 179.97438 * 25 24 22 42 42 H 0.96705 * 114.00039 * 179.97438 * 29 27 12 43 43 H 1.09003 * 109.58753 * 353.42509 * 30 9 7 44 44 H 1.09003 * 109.58384 * 113.70818 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3700 -2.3623 0.3460 10 6 1.8140 -3.6529 -0.1980 11 6 2.0682 -4.6170 0.9651 12 6 0.8131 -4.7005 1.8368 13 1 -0.0272 -5.0409 1.2318 14 7 1.0414 -5.6470 2.9316 15 6 0.8376 -6.9648 2.7364 16 8 0.4637 -7.3684 1.6518 17 6 1.0667 -7.9170 3.8378 18 6 1.4934 -7.4624 5.0838 19 6 1.7070 -8.3582 6.1152 20 6 1.5035 -9.7113 5.9321 21 6 1.0779 -10.1955 4.7009 22 7 0.7958 -11.4582 4.2266 23 1 0.8631 -12.2758 4.7441 24 6 0.4077 -11.3867 2.9195 25 6 0.4226 -10.1061 2.5068 26 6 0.8553 -9.2966 3.6420 27 6 0.4987 -3.3188 2.4148 28 1 -0.3815 -3.3836 3.0543 29 8 1.6131 -2.8575 3.1813 30 6 0.2263 -2.3401 1.2681 31 1 -0.4850 0.8401 -0.0004 32 1 2.7345 -3.5134 -0.7649 33 1 1.0402 -4.0609 -0.8483 34 1 2.9032 -4.2527 1.5636 35 1 2.3052 -5.6059 0.5727 36 1 1.3392 -5.3251 3.7967 37 1 1.6580 -6.4072 5.2444 38 1 2.0373 -7.9945 7.0769 39 1 1.6749 -10.3964 6.7493 40 1 0.1258 -12.2318 2.3090 41 1 0.1642 -9.7456 1.5221 42 1 1.4835 -1.9852 3.5781 43 1 0.0993 -1.3343 1.6686 44 1 -0.6774 -2.6386 0.7367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090583307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:36 Heat of formation + Delta-G solvation = 2.846287 kcal Electronic energy + Delta-G solvation = -27980.494811 eV Core-core repulsion = 24091.932031 eV Total energy + Delta-G solvation = -3888.562780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.43721 -39.59967 -37.89664 -36.75874 -34.75267 -34.22596 -32.33151 -31.85340 -30.01277 -29.22698 -29.06364 -28.61965 -25.23616 -23.85725 -22.35275 -22.01913 -21.73398 -20.89497 -20.23090 -19.42366 -18.18427 -17.21057 -16.81175 -16.21420 -15.94859 -15.40493 -15.23884 -14.97118 -14.83096 -14.25349 -14.18968 -13.98259 -13.72327 -13.63586 -13.18579 -13.06018 -12.83499 -12.70144 -12.14858 -11.95016 -11.83017 -11.72703 -11.56344 -11.22673 -11.08345 -10.76149 -10.56594 -10.42951 -10.13033 -10.01757 -9.84851 -9.71876 -9.49222 -9.13299 -8.62561 -8.46345 -8.44477 -7.86863 -6.64388 -5.79124 -3.19740 0.57565 1.38382 2.58499 2.90328 3.03444 3.37173 3.44608 3.46125 3.48177 3.94900 4.50180 4.55524 4.64880 4.80047 4.87620 4.93396 5.07694 5.19224 5.34863 5.39289 5.44129 5.51507 5.62188 5.64163 5.73558 5.97764 6.01695 6.09394 6.20691 6.24316 6.27412 6.35403 6.47558 6.52589 6.62807 6.64598 6.84532 6.90203 6.94798 7.04833 7.21744 7.30259 7.46543 7.80031 7.87011 8.27931 8.45925 8.52967 9.20694 9.83931 10.41178 11.29739 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.029061 B = 0.002641 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.254904 B =10597.737531 C =11138.510394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.002 4.002 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.065 0.935 9 N -0.583 5.583 10 C 0.148 3.852 11 C -0.136 4.136 12 C 0.163 3.837 13 H 0.091 0.909 14 N -0.714 5.714 15 C 0.553 3.447 16 O -0.537 6.537 17 C -0.083 4.083 18 C -0.109 4.109 19 C -0.108 4.108 20 C -0.109 4.109 21 C 0.083 3.917 22 N -0.598 5.598 23 H 0.415 0.585 24 C 0.043 3.957 25 C -0.182 4.182 26 C -0.059 4.059 27 C 0.073 3.927 28 H 0.043 0.957 29 O -0.560 6.560 30 C 0.146 3.854 31 H 0.253 0.747 32 H 0.057 0.943 33 H 0.020 0.980 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.400 0.600 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.172 0.828 41 H 0.158 0.842 42 H 0.375 0.625 43 H 0.095 0.905 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.835 -20.530 13.655 24.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.199 4.199 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.083 0.917 9 N -0.305 5.305 10 C 0.021 3.979 11 C -0.176 4.176 12 C 0.060 3.940 13 H 0.109 0.891 14 N -0.365 5.365 15 C 0.340 3.660 16 O -0.415 6.415 17 C -0.087 4.087 18 C -0.129 4.129 19 C -0.128 4.128 20 C -0.130 4.130 21 C -0.023 4.023 22 N -0.202 5.202 23 H 0.251 0.749 24 C -0.082 4.082 25 C -0.207 4.207 26 C -0.065 4.065 27 C 0.012 3.988 28 H 0.061 0.939 29 O -0.365 6.365 30 C 0.019 3.981 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.236 0.764 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.189 0.811 41 H 0.176 0.824 42 H 0.221 0.779 43 H 0.113 0.887 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.702 -21.340 12.680 24.832 hybrid contribution 0.298 1.166 0.858 1.477 sum 1.000 -20.174 13.537 24.316 Atomic orbital electron populations 1.70022 1.05205 1.25447 1.54604 1.25023 0.95282 0.98351 1.01269 0.86300 0.79150 0.83627 0.77742 1.21468 1.21672 1.20498 1.19171 0.92540 0.84700 1.40707 0.91731 1.43879 1.35477 1.01743 1.49430 1.20898 0.97848 0.86395 0.92715 1.22302 0.97584 0.99315 0.98432 1.21004 0.99291 0.86230 0.87499 0.89127 1.46146 1.68178 1.06061 1.16069 1.18149 0.77841 0.82359 0.87648 1.90740 1.46483 1.78328 1.25935 1.19486 1.03033 0.92014 0.94163 1.21173 0.99706 0.99940 0.92073 1.20704 1.00979 0.91933 0.99154 1.20135 1.02732 0.95941 0.94157 1.18184 1.03952 0.84880 0.95321 1.41697 1.60180 1.06900 1.11383 0.74888 1.21964 1.02652 0.99060 0.84551 1.21993 1.08151 0.90880 0.99664 1.18994 1.02095 0.91452 0.93929 1.22837 0.87611 0.94142 0.94235 0.93886 1.86349 1.41912 1.38563 1.69680 1.21431 0.89693 0.98319 0.88698 0.93682 0.92491 0.96234 0.91241 0.92830 0.76434 0.85318 0.85117 0.86052 0.81098 0.82441 0.77874 0.88695 0.95430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.80 11.20 55.49 0.62 -25.18 16 2 C 0.00 -0.04 4.92 -17.43 -0.09 -0.13 16 3 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.24 -6.57 9.58 -15.06 -0.14 -6.71 16 8 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.58 -14.51 2.93 -172.31 -0.51 -15.01 16 10 C 0.15 3.27 6.52 -3.71 -0.02 3.25 16 11 C -0.14 -2.66 5.51 -26.61 -0.15 -2.81 16 12 C 0.16 3.00 2.20 -67.89 -0.15 2.85 16 13 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 14 N -0.71 -11.31 5.00 -54.85 -0.27 -11.58 16 15 C 0.55 9.24 7.73 -12.54 -0.10 9.15 16 16 O -0.54 -10.52 14.75 5.26 0.08 -10.45 16 17 C -0.08 -1.19 5.90 -104.75 -0.62 -1.80 16 18 C -0.11 -1.23 9.53 -39.16 -0.37 -1.60 16 19 C -0.11 -1.00 9.99 -39.63 -0.40 -1.40 16 20 C -0.11 -0.99 10.05 -39.37 -0.40 -1.39 16 21 C 0.08 0.91 7.27 -83.99 -0.61 0.30 16 22 N -0.60 -4.92 6.06 -10.66 -0.06 -4.98 16 23 H 0.41 1.90 8.96 -40.82 -0.37 1.54 16 24 C 0.04 0.39 11.82 -16.76 -0.20 0.19 16 25 C -0.18 -2.35 10.24 -37.78 -0.39 -2.73 16 26 C -0.06 -0.81 6.15 -104.85 -0.64 -1.46 16 27 C 0.07 1.35 3.38 -26.61 -0.09 1.26 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 O -0.56 -9.93 12.08 -35.23 -0.43 -10.35 16 30 C 0.15 3.34 4.95 -3.71 -0.02 3.32 16 31 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 1.42 7.61 -51.93 -0.40 1.03 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.40 5.54 6.29 -40.82 -0.26 5.28 16 37 H 0.13 1.24 6.40 -52.49 -0.34 0.90 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.16 2.21 7.16 -52.49 -0.38 1.83 16 42 H 0.37 5.74 9.08 45.56 0.41 6.15 16 43 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -33.70 358.67 -9.52 -43.22 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -4.94 Total: 12.23 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -4.38 Total: 0.29 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.22 Total: -56.76 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.35 Total: -20.80 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.70 -9.52 -43.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090583307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.066 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds