Wall clock time and date at job start Tue Mar 31 2020 04:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00068 * 2 1 4 4 H 1.48496 * 109.47105 * 269.99751 * 3 2 1 5 5 H 1.48499 * 109.47048 * 29.99789 * 3 2 1 6 6 H 1.48504 * 109.47153 * 149.99759 * 3 2 1 7 7 C 1.38817 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99821 * 163.08698 * 7 2 1 9 9 N 1.36930 * 119.99928 * 343.08583 * 7 2 1 10 10 C 1.46924 * 120.63285 * 331.81087 * 9 7 2 11 11 C 1.53188 * 108.76430 * 233.63454 * 10 9 7 12 12 C 1.53033 * 109.31657 * 305.34485 * 11 10 9 13 13 H 1.09005 * 109.46006 * 301.37434 * 12 11 10 14 14 N 1.46505 * 109.46348 * 181.39999 * 12 11 10 15 15 C 1.34771 * 119.99891 * 84.97113 * 14 12 11 16 16 O 1.21612 * 120.00249 * 0.02562 * 15 14 12 17 17 C 1.47376 * 120.00050 * 180.02562 * 15 14 12 18 18 C 1.39326 * 120.34336 * 359.97438 * 17 15 14 19 19 C 1.38270 * 120.20343 * 179.70326 * 18 17 15 20 20 C 1.38058 * 120.88211 * 0.27192 * 19 18 17 21 21 C 1.38979 * 120.27085 * 359.97438 * 20 19 18 22 22 N 1.37801 * 133.37575 * 180.02562 * 21 20 19 23 23 H 0.96997 * 125.07187 * 359.97438 * 22 21 20 24 24 C 1.36546 * 109.85364 * 179.97438 * 22 21 20 25 25 C 1.34554 * 109.89755 * 0.02562 * 24 22 21 26 26 C 1.40670 * 119.51697 * 0.02562 * 21 20 19 27 27 C 1.53035 * 109.52820 * 61.38316 * 12 11 10 28 28 H 1.08996 * 109.49882 * 58.61441 * 27 12 11 29 29 O 1.42905 * 109.50128 * 178.67877 * 27 12 11 30 30 C 1.46926 * 120.63069 * 151.82992 * 9 7 2 31 31 H 0.96997 * 119.99614 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.58831 * 353.41521 * 10 9 7 33 33 H 1.08999 * 109.58639 * 113.84125 * 10 9 7 34 34 H 1.09000 * 109.48656 * 185.39878 * 11 10 9 35 35 H 1.08997 * 109.50903 * 65.30632 * 11 10 9 36 36 H 0.96999 * 119.99977 * 264.96873 * 14 12 11 37 37 H 1.08001 * 119.89645 * 359.97438 * 18 17 15 38 38 H 1.07995 * 119.56251 * 180.25703 * 19 18 17 39 39 H 1.07997 * 119.86580 * 179.97438 * 20 19 18 40 40 H 1.08002 * 125.05559 * 180.02562 * 24 22 21 41 41 H 1.07998 * 126.49281 * 180.02562 * 25 24 22 42 42 H 0.96699 * 113.99902 * 179.97438 * 29 27 12 43 43 H 1.09000 * 109.58558 * 6.58587 * 30 9 7 44 44 H 1.09006 * 109.70758 * 246.23147 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2715 9 7 1.3700 -2.3622 0.3461 10 6 0.2264 -2.3401 1.2681 11 6 0.4988 -3.3187 2.4147 12 6 0.8132 -4.7005 1.8369 13 1 -0.0272 -5.0409 1.2318 14 7 1.0414 -5.6470 2.9316 15 6 -0.0030 -6.2695 3.5129 16 8 -1.1349 -6.0460 3.1284 17 6 0.2265 -7.2213 4.6145 18 6 1.5203 -7.4831 5.0604 19 6 1.7318 -8.3719 6.0982 20 6 0.6731 -9.0173 6.7054 21 6 -0.6286 -8.7810 6.2798 22 7 -1.8569 -9.2613 6.6793 23 1 -1.9992 -9.9030 7.3926 24 6 -2.8436 -8.6991 5.9212 25 6 -2.3056 -7.8540 5.0229 26 6 -0.8600 -7.8794 5.2250 27 6 2.0682 -4.6169 0.9652 28 1 2.9034 -4.2533 1.5637 29 8 2.3790 -5.9135 0.4508 30 6 1.8140 -3.6529 -0.1979 31 1 -0.4849 0.8401 -0.0004 32 1 0.0993 -1.3343 1.6686 33 1 -0.6768 -2.6410 0.7373 34 1 -0.3815 -3.3836 3.0543 35 1 1.3487 -2.9669 2.9994 36 1 1.9443 -5.8256 3.2381 37 1 2.3602 -6.9870 4.5968 38 1 2.7387 -8.5640 6.4383 39 1 0.8572 -9.7086 7.5144 40 1 -3.8990 -8.9025 6.0268 41 1 -2.8418 -7.2675 4.2915 42 1 3.1648 -5.9352 -0.1123 43 1 2.7345 -3.5133 -0.7647 44 1 1.0420 -4.0621 -0.8497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090583308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:39 Heat of formation + Delta-G solvation = 1.602200 kcal Electronic energy + Delta-G solvation = -27872.358932 eV Core-core repulsion = 23983.742204 eV Total energy + Delta-G solvation = -3888.616727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.40718 -39.58036 -37.90442 -36.73096 -35.36204 -34.22857 -32.26116 -31.77512 -30.23978 -29.38917 -28.98914 -28.31602 -25.26183 -23.84993 -22.36140 -22.04678 -21.72783 -20.87367 -20.26334 -19.51578 -18.19009 -17.10823 -16.76791 -16.51987 -16.15483 -15.75577 -15.22614 -14.88056 -14.77745 -14.18714 -14.16575 -14.07602 -13.84421 -13.50496 -13.14837 -13.02444 -12.80461 -12.69580 -12.23845 -12.06365 -11.87303 -11.67073 -11.54899 -11.49446 -11.08333 -10.84702 -10.61861 -10.28514 -10.24510 -9.91831 -9.81991 -9.72955 -9.64686 -9.33451 -8.67805 -8.42352 -8.41212 -7.83896 -6.73643 -5.82492 -3.26785 0.60625 1.40606 2.61897 2.93063 3.08033 3.35602 3.43107 3.44627 3.46898 3.98736 4.40129 4.53613 4.60476 4.68248 4.82176 4.94599 5.09660 5.21660 5.34039 5.36429 5.42217 5.52021 5.60836 5.64382 5.74855 5.82690 6.00726 6.03269 6.17112 6.23186 6.26188 6.38810 6.50131 6.52399 6.58036 6.68038 6.73192 6.81606 6.92300 6.97961 7.33126 7.33401 7.64365 7.75299 7.86240 7.96613 8.40548 8.57169 9.15804 9.78255 10.34576 11.26090 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.021276 B = 0.002724 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.740885 B =10276.526445 C =10718.428238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.146 4.146 12 C 0.164 3.836 13 H 0.088 0.912 14 N -0.712 5.712 15 C 0.555 3.445 16 O -0.534 6.534 17 C -0.081 4.081 18 C -0.110 4.110 19 C -0.109 4.109 20 C -0.109 4.109 21 C 0.084 3.916 22 N -0.598 5.598 23 H 0.414 0.586 24 C 0.043 3.957 25 C -0.181 4.181 26 C -0.059 4.059 27 C 0.080 3.920 28 H 0.056 0.944 29 O -0.570 6.570 30 C 0.121 3.879 31 H 0.255 0.745 32 H 0.093 0.907 33 H 0.024 0.976 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.394 0.606 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.172 0.828 41 H 0.158 0.842 42 H 0.373 0.627 43 H 0.059 0.941 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.612 -19.355 14.108 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.187 4.187 12 C 0.060 3.940 13 H 0.106 0.894 14 N -0.362 5.362 15 C 0.342 3.658 16 O -0.411 6.411 17 C -0.084 4.084 18 C -0.130 4.130 19 C -0.128 4.128 20 C -0.130 4.130 21 C -0.023 4.023 22 N -0.202 5.202 23 H 0.251 0.749 24 C -0.083 4.083 25 C -0.206 4.206 26 C -0.065 4.065 27 C 0.019 3.981 28 H 0.074 0.926 29 O -0.375 6.375 30 C -0.007 4.007 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.229 0.771 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.189 0.811 41 H 0.176 0.824 42 H 0.219 0.781 43 H 0.078 0.922 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.084 -19.262 14.220 23.942 hybrid contribution 1.301 0.630 0.175 1.456 sum 1.385 -18.631 14.394 23.585 Atomic orbital electron populations 1.70034 1.05296 1.25721 1.53167 1.25081 0.95293 0.98517 1.00518 0.86291 0.79140 0.83541 0.77732 1.21337 1.21481 1.20448 1.19137 0.92506 0.84620 1.42601 0.91610 1.44037 1.35948 1.01155 1.50069 1.20826 0.88693 0.98249 0.87667 1.22604 1.01075 0.94310 1.00697 1.20997 0.97531 0.89101 0.86372 0.89365 1.46014 1.09076 1.44387 1.36677 1.18081 0.85102 0.80399 0.82196 1.90750 1.22358 1.64264 1.63772 1.19487 0.92623 0.98757 0.97573 1.21132 0.95464 0.98855 0.97520 1.20688 0.98349 0.97207 0.96549 1.20124 0.89156 1.02206 1.01553 1.18183 0.86951 0.99029 0.98121 1.41694 1.04314 1.40724 1.33440 0.74902 1.21967 0.93804 0.97957 0.94527 1.22010 0.91795 1.03783 1.03012 1.19001 0.93608 0.97628 0.96259 1.22781 0.96034 0.83171 0.96139 0.92638 1.86497 1.50656 1.30463 1.69844 1.21521 0.98776 0.87417 0.92935 0.93446 0.88937 0.95788 0.91851 0.92379 0.77106 0.85483 0.85171 0.86073 0.81084 0.82405 0.78078 0.92221 0.95314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.99 11.20 55.49 0.62 -25.37 16 2 C 0.01 0.14 4.92 -17.43 -0.09 0.06 16 3 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.26 -6.97 9.58 -15.06 -0.14 -7.11 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.54 2.99 -172.32 -0.52 -15.05 16 10 C 0.17 4.17 5.30 -3.71 -0.02 4.15 16 11 C -0.15 -2.97 5.65 -26.62 -0.15 -3.12 16 12 C 0.16 3.06 2.12 -67.89 -0.14 2.92 16 13 H 0.09 1.90 7.58 -51.93 -0.39 1.50 16 14 N -0.71 -11.44 4.87 -54.86 -0.27 -11.71 16 15 C 0.56 9.65 7.73 -12.54 -0.10 9.55 16 16 O -0.53 -11.00 14.75 5.27 0.08 -10.92 16 17 C -0.08 -1.18 5.90 -104.75 -0.62 -1.80 16 18 C -0.11 -1.25 9.53 -39.16 -0.37 -1.62 16 19 C -0.11 -1.02 9.99 -39.64 -0.40 -1.41 16 20 C -0.11 -1.02 10.05 -39.37 -0.40 -1.42 16 21 C 0.08 0.95 7.27 -83.99 -0.61 0.34 16 22 N -0.60 -5.14 6.06 -10.66 -0.06 -5.20 16 23 H 0.41 2.03 8.96 -40.82 -0.37 1.67 16 24 C 0.04 0.41 11.82 -16.76 -0.20 0.21 16 25 C -0.18 -2.44 10.24 -37.78 -0.39 -2.83 16 26 C -0.06 -0.85 6.15 -104.85 -0.64 -1.49 16 27 C 0.08 1.38 3.14 -26.61 -0.08 1.30 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 O -0.57 -8.73 13.16 -35.23 -0.46 -9.20 16 30 C 0.12 2.49 6.14 -3.71 -0.02 2.47 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.09 2.48 6.06 -51.93 -0.31 2.17 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.39 5.26 6.64 -40.82 -0.27 4.99 16 37 H 0.13 1.20 6.40 -52.49 -0.34 0.86 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.16 2.33 7.16 -52.49 -0.38 1.95 16 42 H 0.37 4.08 9.08 45.56 0.41 4.49 16 43 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -34.54 360.36 -9.57 -44.11 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -4.99 Total: 11.39 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -4.37 Total: 0.19 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.23 Total: -57.33 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.39 Total: -20.12 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.54 -9.57 -44.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090583308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.712 kcal (2) G-P(sol) polarization free energy of solvation -34.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds