Wall clock time and date at job start Tue Mar 31 2020 04:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00041 * 2 1 4 4 H 1.48494 * 109.47648 * 270.00530 * 3 2 1 5 5 H 1.48507 * 109.46657 * 30.00379 * 3 2 1 6 6 H 1.48497 * 109.47094 * 149.99949 * 3 2 1 7 7 C 1.38810 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00372 * 197.35708 * 7 2 1 9 9 N 1.36945 * 119.99610 * 17.35758 * 7 2 1 10 10 C 1.46926 * 120.63209 * 27.68307 * 9 7 2 11 11 C 1.53187 * 108.77487 * 126.39128 * 10 9 7 12 12 C 1.53049 * 109.31337 * 54.63587 * 11 10 9 13 13 H 1.08999 * 109.46088 * 58.65254 * 12 11 10 14 14 N 1.46498 * 109.45961 * 178.61259 * 12 11 10 15 15 C 1.34772 * 119.99746 * 275.06313 * 14 12 11 16 16 O 1.21609 * 120.00603 * 0.02562 * 15 14 12 17 17 C 1.47379 * 119.99708 * 179.97438 * 15 14 12 18 18 C 1.39323 * 120.34277 * 0.02562 * 17 15 14 19 19 C 1.38274 * 120.19523 * 179.97438 * 18 17 15 20 20 C 1.38054 * 120.89005 * 359.97438 * 19 18 17 21 21 C 1.38984 * 120.26715 * 0.04045 * 20 19 18 22 22 N 1.37795 * 133.37750 * 179.97438 * 21 20 19 23 23 H 0.97003 * 125.07562 * 0.04677 * 22 21 20 24 24 C 1.36549 * 109.85375 * 180.02562 * 22 21 20 25 25 C 1.34548 * 109.89809 * 359.97438 * 24 22 21 26 26 C 1.40664 * 119.51578 * 359.68539 * 21 20 19 27 27 C 1.53040 * 109.53586 * 298.63455 * 12 11 10 28 28 H 1.09003 * 109.52515 * 301.39593 * 27 12 11 29 29 O 1.42894 * 109.49941 * 181.31620 * 27 12 11 30 30 C 1.46926 * 120.62880 * 207.68431 * 9 7 2 31 31 H 0.97000 * 120.00650 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.58447 * 6.60177 * 10 9 7 33 33 H 1.08999 * 109.70080 * 246.24849 * 10 9 7 34 34 H 1.08994 * 109.50056 * 294.68606 * 11 10 9 35 35 H 1.09000 * 109.49857 * 174.58427 * 11 10 9 36 36 H 0.97004 * 119.99992 * 95.06767 * 14 12 11 37 37 H 1.07996 * 119.89921 * 0.02562 * 18 17 15 38 38 H 1.08001 * 119.55844 * 179.97438 * 19 18 17 39 39 H 1.07998 * 119.86805 * 180.02562 * 20 19 18 40 40 H 1.07999 * 125.05261 * 180.02562 * 24 22 21 41 41 H 1.07997 * 126.49600 * 179.97438 * 25 24 22 42 42 H 0.96692 * 114.00682 * 180.16023 * 29 27 12 43 43 H 1.09003 * 109.58984 * 113.81556 * 30 9 7 44 44 H 1.09001 * 109.58684 * 353.39320 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2784 9 7 1.3723 -2.3609 -0.3549 10 6 0.2279 -2.3339 -1.2759 11 6 0.5010 -3.3032 -2.4302 12 6 0.8191 -4.6888 -1.8633 13 1 -0.0200 -5.0358 -1.2603 14 7 1.0484 -5.6262 -2.9655 15 6 0.0047 -6.2460 -3.5510 16 8 -1.1274 -6.0269 -3.1648 17 6 0.2353 -7.1887 -4.6602 18 6 1.5293 -7.4447 -5.1088 19 6 1.7422 -8.3301 -6.1493 20 6 0.6845 -8.9739 -6.7598 21 6 -0.6179 -8.7391 -6.3351 22 7 -1.8454 -9.2184 -6.7376 23 1 -1.9868 -9.8582 -7.4529 24 6 -2.8333 -8.6587 -5.9789 25 6 -2.2966 -7.8163 -5.0774 26 6 -0.8503 -7.8456 -5.2738 27 6 2.0747 -4.6093 -0.9919 28 1 2.9089 -4.2391 -1.5879 29 8 2.3885 -5.9090 -0.4878 30 6 1.8194 -3.6548 0.1787 31 1 -0.4851 0.8400 0.0004 32 1 0.0985 -1.3254 -1.6684 33 1 -0.6756 -2.6394 -0.7482 34 1 1.3496 -2.9451 -3.0130 35 1 -0.3797 -3.3651 -3.0694 36 1 1.9514 -5.8008 -3.2738 37 1 2.3685 -6.9508 -4.6418 38 1 2.7495 -8.5206 -6.4891 39 1 0.8698 -9.6625 -7.5708 40 1 -3.8884 -8.8626 -6.0860 41 1 -2.8337 -7.2322 -4.3449 42 1 3.1736 -5.9332 0.0761 43 1 1.0471 -4.0694 0.8266 44 1 2.7401 -3.5177 0.7459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090583309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:43 Heat of formation + Delta-G solvation = 1.615077 kcal Electronic energy + Delta-G solvation = -27873.747200 eV Core-core repulsion = 23985.131031 eV Total energy + Delta-G solvation = -3888.616169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40801 -39.58151 -37.90634 -36.73147 -35.36525 -34.23040 -32.26156 -31.77571 -30.24210 -29.39005 -28.98957 -28.31580 -25.26441 -23.85087 -22.36299 -22.04835 -21.72855 -20.87412 -20.26376 -19.51620 -18.19071 -17.10962 -16.76892 -16.52169 -16.15558 -15.75668 -15.22647 -14.88243 -14.78269 -14.19112 -14.16362 -14.07594 -13.84218 -13.50541 -13.14935 -13.02522 -12.80431 -12.69622 -12.24220 -12.06346 -11.87400 -11.67070 -11.55017 -11.49794 -11.08118 -10.86489 -10.62001 -10.28899 -10.21885 -9.91878 -9.81991 -9.73072 -9.64701 -9.33505 -8.67957 -8.42339 -8.41149 -7.83946 -6.74958 -5.82411 -3.26545 0.60618 1.40596 2.61885 2.93054 3.08006 3.36140 3.43084 3.44523 3.46747 3.98702 4.39967 4.53564 4.60431 4.68238 4.82137 4.94583 5.09619 5.21640 5.33902 5.35934 5.42213 5.51904 5.60652 5.64331 5.74820 5.82447 6.00690 6.03214 6.16971 6.23167 6.26158 6.38726 6.50115 6.52236 6.57941 6.67979 6.72966 6.81384 6.92259 6.97900 7.33066 7.33296 7.64592 7.75442 7.86174 7.96538 8.40175 8.57111 9.15644 9.78137 10.34111 11.26069 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.002726 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.401211 B =10268.289400 C =10710.434416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.146 4.146 12 C 0.164 3.836 13 H 0.088 0.912 14 N -0.712 5.712 15 C 0.555 3.445 16 O -0.534 6.534 17 C -0.081 4.081 18 C -0.110 4.110 19 C -0.109 4.109 20 C -0.109 4.109 21 C 0.084 3.916 22 N -0.598 5.598 23 H 0.414 0.586 24 C 0.043 3.957 25 C -0.181 4.181 26 C -0.059 4.059 27 C 0.080 3.920 28 H 0.056 0.944 29 O -0.570 6.570 30 C 0.121 3.879 31 H 0.256 0.744 32 H 0.093 0.907 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.394 0.606 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.172 0.828 41 H 0.158 0.842 42 H 0.373 0.627 43 H 0.029 0.971 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 -19.288 -14.199 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.060 3.940 13 H 0.106 0.894 14 N -0.362 5.362 15 C 0.342 3.658 16 O -0.411 6.411 17 C -0.084 4.084 18 C -0.130 4.130 19 C -0.128 4.128 20 C -0.130 4.130 21 C -0.023 4.023 22 N -0.202 5.202 23 H 0.251 0.749 24 C -0.083 4.083 25 C -0.206 4.206 26 C -0.065 4.065 27 C 0.019 3.981 28 H 0.074 0.926 29 O -0.375 6.375 30 C -0.007 4.007 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.229 0.771 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.189 0.811 41 H 0.176 0.824 42 H 0.219 0.781 43 H 0.047 0.953 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.122 -19.198 -14.296 23.937 hybrid contribution 1.304 0.630 -0.197 1.461 sum 1.426 -18.568 -14.494 23.598 Atomic orbital electron populations 1.70035 1.05283 1.25726 1.53179 1.25067 0.95295 0.98517 1.00554 0.86266 0.79063 0.83537 0.77726 1.21355 1.21706 1.20426 1.19169 0.92703 0.84687 1.42285 0.91518 1.44051 1.35870 1.01012 1.50294 1.20826 0.88664 0.98411 0.87584 1.22604 1.01071 0.94261 1.00738 1.20999 0.97506 0.89278 0.86219 0.89369 1.46013 1.09099 1.44882 1.36162 1.18081 0.85105 0.80325 0.82268 1.90749 1.22321 1.64064 1.64005 1.19489 0.92640 0.98811 0.97499 1.21131 0.95457 0.98880 0.97504 1.20688 0.98356 0.97207 0.96540 1.20124 0.89148 1.02213 1.01554 1.18181 0.86961 0.99161 0.97977 1.41695 1.04313 1.40878 1.33285 0.74901 1.21965 0.93786 0.97962 0.94546 1.22009 0.91785 1.03831 1.02970 1.19002 0.93605 0.97725 0.96173 1.22780 0.96014 0.83096 0.96235 0.92635 1.86493 1.50738 1.30218 1.70010 1.21527 0.98756 0.87417 0.92956 0.93440 0.88899 0.95796 0.92384 0.91845 0.77104 0.85482 0.85172 0.86071 0.81086 0.82404 0.78073 0.95296 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.99 11.19 55.49 0.62 -25.37 16 2 C 0.00 0.14 4.91 -17.43 -0.09 0.05 16 3 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.26 -6.96 9.59 -15.06 -0.14 -7.10 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.53 3.00 -172.33 -0.52 -15.05 16 10 C 0.17 4.16 5.31 -3.71 -0.02 4.14 16 11 C -0.15 -2.97 5.65 -26.61 -0.15 -3.12 16 12 C 0.16 3.06 2.12 -67.89 -0.14 2.92 16 13 H 0.09 1.89 7.58 -51.93 -0.39 1.50 16 14 N -0.71 -11.44 4.87 -54.85 -0.27 -11.70 16 15 C 0.56 9.64 7.73 -12.54 -0.10 9.55 16 16 O -0.53 -10.99 14.75 5.27 0.08 -10.92 16 17 C -0.08 -1.18 5.90 -104.75 -0.62 -1.80 16 18 C -0.11 -1.25 9.53 -39.16 -0.37 -1.62 16 19 C -0.11 -1.02 9.99 -39.64 -0.40 -1.41 16 20 C -0.11 -1.02 10.05 -39.37 -0.40 -1.42 16 21 C 0.08 0.95 7.27 -83.99 -0.61 0.34 16 22 N -0.60 -5.14 6.06 -10.66 -0.06 -5.20 16 23 H 0.41 2.03 8.96 -40.82 -0.37 1.67 16 24 C 0.04 0.41 11.82 -16.76 -0.20 0.21 16 25 C -0.18 -2.44 10.24 -37.78 -0.39 -2.83 16 26 C -0.06 -0.85 6.15 -104.85 -0.64 -1.49 16 27 C 0.08 1.38 3.14 -26.61 -0.08 1.30 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 O -0.57 -8.72 13.16 -35.23 -0.46 -9.19 16 30 C 0.12 2.49 6.14 -3.71 -0.02 2.47 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.09 2.50 6.03 -51.93 -0.31 2.18 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.39 5.26 6.64 -40.82 -0.27 4.99 16 37 H 0.13 1.20 6.40 -52.49 -0.34 0.86 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.16 2.33 7.16 -52.49 -0.38 1.95 16 42 H 0.37 4.07 9.08 45.56 0.41 4.49 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -34.52 360.33 -9.57 -44.09 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -4.98 Total: 11.37 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -4.37 Total: 0.17 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.23 Total: -57.32 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.39 Total: -20.10 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.52 -9.57 -44.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090583309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.703 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds