Wall clock time and date at job start Tue Mar 31 2020 04:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99805 * 2 1 4 4 H 1.48506 * 109.47155 * 270.00155 * 3 2 1 5 5 H 1.48496 * 109.47194 * 30.00359 * 3 2 1 6 6 H 1.48504 * 109.47075 * 150.00543 * 3 2 1 7 7 C 1.38810 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99945 * 197.36056 * 7 2 1 9 9 N 1.36937 * 120.00279 * 17.35742 * 7 2 1 10 10 C 1.46924 * 120.63619 * 207.67410 * 9 7 2 11 11 C 1.53191 * 108.77507 * 233.62925 * 10 9 7 12 12 C 1.53039 * 109.31208 * 305.35876 * 11 10 9 13 13 H 1.09001 * 109.45567 * 181.37557 * 12 11 10 14 14 N 1.46503 * 109.46074 * 301.34706 * 12 11 10 15 15 C 1.34776 * 119.99852 * 275.06599 * 14 12 11 16 16 O 1.21591 * 119.99822 * 359.97438 * 15 14 12 17 17 C 1.47577 * 119.99987 * 179.97438 * 15 14 12 18 18 C 1.40242 * 119.83267 * 0.02562 * 17 15 14 19 19 C 1.36190 * 120.37983 * 180.02562 * 18 17 15 20 20 C 1.39915 * 119.95787 * 0.22904 * 19 18 17 21 21 C 1.46260 * 133.83470 * 180.44746 * 20 19 18 22 22 C 1.34454 * 107.03572 * 179.52453 * 21 20 19 23 23 N 1.36567 * 109.97436 * 359.76247 * 22 21 20 24 24 H 0.97006 * 125.06642 * 179.97438 * 23 22 21 25 25 C 1.37823 * 109.86279 * 0.02562 * 23 22 21 26 26 C 1.38678 * 133.37854 * 180.02562 * 25 23 22 27 27 C 1.53045 * 109.53814 * 61.36629 * 12 11 10 28 28 H 1.09003 * 109.49910 * 58.61982 * 27 12 11 29 29 O 1.42896 * 109.50063 * 178.68691 * 27 12 11 30 30 C 1.46929 * 120.62864 * 27.68722 * 9 7 2 31 31 H 0.96997 * 120.00247 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.58483 * 353.40933 * 10 9 7 33 33 H 1.08994 * 109.59212 * 113.83799 * 10 9 7 34 34 H 1.09001 * 109.50203 * 185.40852 * 11 10 9 35 35 H 1.08999 * 109.50091 * 65.30826 * 11 10 9 36 36 H 0.96999 * 119.99980 * 95.06655 * 14 12 11 37 37 H 1.08000 * 119.80628 * 0.02562 * 18 17 15 38 38 H 1.07994 * 120.02222 * 179.97438 * 19 18 17 39 39 H 1.07999 * 126.47987 * 359.32450 * 21 20 19 40 40 H 1.07993 * 125.01866 * 179.76264 * 22 21 20 41 41 H 1.08005 * 120.16675 * 359.94738 * 26 25 23 42 42 H 0.96706 * 114.00411 * 179.97438 * 29 27 12 43 43 H 1.08998 * 109.58727 * 6.58504 * 30 9 7 44 44 H 1.08999 * 109.70380 * 246.23224 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2785 9 7 1.3725 -2.3609 -0.3548 10 6 1.8197 -3.6548 0.1786 11 6 2.0754 -4.6090 -0.9923 12 6 0.8199 -4.6885 -1.8639 13 1 0.9910 -5.3857 -2.6841 14 7 -0.3079 -5.1554 -1.0537 15 6 -0.5058 -6.4760 -0.8716 16 8 0.2514 -7.2800 -1.3802 17 6 -1.6416 -6.9463 -0.0550 18 6 -2.5131 -6.0159 0.5295 19 6 -3.5645 -6.4375 1.2856 20 6 -3.7764 -7.8058 1.4863 21 6 -4.7825 -8.5790 2.2137 22 6 -4.4805 -9.8780 2.0427 23 7 -3.3670 -9.9991 1.2614 24 1 -2.9579 -10.8391 1.0005 25 6 -2.9105 -8.7500 0.8998 26 6 -1.8421 -8.3118 0.1320 27 6 0.5016 -3.3030 -2.4305 28 1 1.3500 -2.9447 -3.0136 29 8 -0.6529 -3.3841 -3.2687 30 6 0.2281 -2.3340 -1.2759 31 1 -0.4850 0.8400 0.0004 32 1 2.7403 -3.5177 0.7459 33 1 1.0473 -4.0698 0.8261 34 1 2.3149 -5.6005 -0.6081 35 1 2.9091 -4.2382 -1.5885 36 1 -0.9122 -4.5139 -0.6483 37 1 -2.3495 -4.9590 0.3791 38 1 -4.2317 -5.7160 1.7333 39 1 -5.6095 -8.1816 2.7834 40 1 -5.0364 -10.7038 2.4614 41 1 -1.1691 -9.0259 -0.3194 42 1 -0.9132 -2.5401 -3.6626 43 1 0.0985 -1.3254 -1.6683 44 1 -0.6754 -2.6398 -0.7485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090600663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:53 Heat of formation + Delta-G solvation = 0.646460 kcal Electronic energy + Delta-G solvation = -28158.094402 eV Core-core repulsion = 24269.436230 eV Total energy + Delta-G solvation = -3888.658171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36459 -39.82379 -37.97880 -36.46347 -35.27180 -34.08113 -32.09788 -31.96922 -30.10836 -29.33380 -29.03879 -28.53237 -25.38188 -23.64588 -22.58554 -22.26996 -21.75230 -20.86342 -20.35075 -18.74239 -18.37214 -17.22536 -16.78856 -16.52390 -16.06439 -15.56775 -14.97743 -14.88156 -14.52343 -14.31665 -14.14678 -13.92652 -13.76570 -13.67529 -13.35497 -13.26746 -13.22065 -12.68565 -12.26338 -11.97463 -11.79711 -11.69532 -11.54044 -11.07684 -11.03115 -10.99022 -10.84495 -10.42359 -10.19865 -9.99405 -9.86711 -9.71214 -9.52432 -9.31796 -8.67525 -8.54176 -8.31882 -7.85853 -6.78659 -5.89111 -3.32185 0.77819 1.45043 2.45384 2.88912 3.21169 3.32288 3.40221 3.41056 3.59240 4.03598 4.40277 4.56627 4.62458 4.69858 4.94018 5.06523 5.23246 5.26020 5.29839 5.41242 5.44923 5.46500 5.63048 5.74238 5.79654 5.85169 5.94326 5.95004 6.05291 6.26022 6.33126 6.44071 6.47370 6.49112 6.53104 6.59665 6.72976 6.82966 6.97121 7.01134 7.06565 7.30438 7.40939 7.71060 7.93855 8.11185 8.34393 8.57900 9.09496 9.72306 10.28138 11.18993 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.018148 B = 0.003024 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.465849 B = 9258.059358 C = 9933.761352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.145 3.855 11 C -0.145 4.145 12 C 0.165 3.835 13 H 0.079 0.921 14 N -0.697 5.697 15 C 0.559 3.441 16 O -0.554 6.554 17 C -0.109 4.109 18 C -0.109 4.109 19 C -0.079 4.079 20 C -0.089 4.089 21 C -0.210 4.210 22 C 0.055 3.945 23 N -0.594 5.594 24 H 0.416 0.584 25 C 0.079 3.921 26 C -0.064 4.064 27 C 0.066 3.934 28 H 0.062 0.938 29 O -0.572 6.572 30 C 0.146 3.854 31 H 0.255 0.745 32 H 0.057 0.943 33 H 0.021 0.979 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.405 0.595 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.147 0.853 40 H 0.171 0.829 41 H 0.133 0.867 42 H 0.376 0.624 43 H 0.093 0.907 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.580 -16.043 1.343 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.019 3.981 11 C -0.185 4.185 12 C 0.061 3.939 13 H 0.097 0.903 14 N -0.348 5.348 15 C 0.347 3.653 16 O -0.434 6.434 17 C -0.114 4.114 18 C -0.128 4.128 19 C -0.097 4.097 20 C -0.094 4.094 21 C -0.235 4.235 22 C -0.072 4.072 23 N -0.197 5.197 24 H 0.253 0.747 25 C -0.027 4.027 26 C -0.086 4.086 27 C 0.005 3.995 28 H 0.080 0.920 29 O -0.377 6.377 30 C 0.019 3.981 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.242 0.758 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.188 0.812 41 H 0.151 0.849 42 H 0.222 0.778 43 H 0.111 0.889 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -8.062 -17.177 1.141 19.009 hybrid contribution 0.228 1.420 -0.011 1.438 sum -7.833 -15.757 1.130 17.633 Atomic orbital electron populations 1.70012 1.05216 1.25673 1.53742 1.25048 0.95335 0.98488 1.00713 0.86267 0.79170 0.83484 0.77711 1.21423 1.21734 1.20389 1.19219 0.92884 0.84667 1.41582 0.91382 1.43969 1.35645 1.01743 1.49827 1.20930 0.97957 0.86346 0.92908 1.22406 0.96483 1.00344 0.99254 1.20828 0.85843 0.94498 0.92779 0.90263 1.45904 1.30530 1.06501 1.51907 1.18084 0.84250 0.82686 0.80328 1.90720 1.47585 1.54451 1.50656 1.19594 0.97314 0.93035 1.01430 1.20847 0.94768 0.99394 0.97816 1.20192 0.97724 0.93371 0.98442 1.19395 0.96551 0.93046 1.00417 1.21736 1.02385 0.91769 1.07595 1.21852 0.89938 0.98575 0.96858 1.41750 1.25712 1.06770 1.45421 0.74727 1.18083 0.97978 0.84914 1.01699 1.20033 0.95604 0.95133 0.97825 1.22945 0.87780 0.95793 0.92952 0.91989 1.86423 1.48216 1.36609 1.66433 1.21395 0.89465 0.98662 0.88575 0.93525 0.92461 0.96085 0.91666 0.91112 0.75762 0.85248 0.85331 0.83486 0.81227 0.84941 0.77759 0.88894 0.95814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.68 11.19 55.49 0.62 -24.06 16 2 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 20.89 29.59 -169.99 -5.03 15.86 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.25 -6.64 9.58 -15.06 -0.14 -6.78 16 8 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 9 N -0.59 -13.85 2.99 -172.32 -0.52 -14.37 16 10 C 0.14 2.98 6.26 -3.71 -0.02 2.95 16 11 C -0.14 -2.63 5.77 -26.61 -0.15 -2.79 16 12 C 0.17 3.03 2.47 -67.89 -0.17 2.86 16 13 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 14 N -0.70 -12.27 4.10 -54.79 -0.22 -12.49 16 15 C 0.56 9.94 7.72 -12.45 -0.10 9.84 16 16 O -0.55 -11.14 15.97 5.29 0.08 -11.05 16 17 C -0.11 -1.69 5.87 -104.95 -0.62 -2.30 16 18 C -0.11 -1.52 9.46 -39.57 -0.37 -1.90 16 19 C -0.08 -1.00 10.03 -39.69 -0.40 -1.40 16 20 C -0.09 -1.11 6.37 -105.04 -0.67 -1.78 16 21 C -0.21 -2.03 11.08 -37.70 -0.42 -2.45 16 22 C 0.05 0.42 11.81 -16.78 -0.20 0.23 16 23 N -0.59 -5.24 6.07 -10.69 -0.06 -5.30 16 24 H 0.42 2.44 8.96 -40.82 -0.37 2.07 16 25 C 0.08 0.98 7.26 -84.00 -0.61 0.37 16 26 C -0.06 -0.90 9.61 -39.03 -0.37 -1.27 16 27 C 0.07 1.23 3.36 -26.61 -0.09 1.14 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 O -0.57 -9.83 13.21 -35.23 -0.47 -10.30 16 30 C 0.15 3.19 4.64 -3.71 -0.02 3.17 16 31 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 33 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.40 7.04 4.86 -40.82 -0.20 6.84 16 37 H 0.13 1.77 6.36 -52.49 -0.33 1.43 16 38 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.17 0.64 8.06 -52.49 -0.42 0.21 16 41 H 0.13 1.78 7.62 -52.48 -0.40 1.38 16 42 H 0.38 5.15 9.08 45.56 0.41 5.56 16 43 H 0.09 2.27 6.03 -51.93 -0.31 1.95 16 44 H 0.02 0.54 6.65 -51.93 -0.35 0.20 16 LS Contribution 358.26 15.07 5.40 5.40 Total: -1.00 -32.29 358.26 -9.47 -41.76 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -4.84 Total: 14.68 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -4.44 Total: -0.12 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.18 Total: -56.22 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.38 Total: -21.35 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.29 -9.47 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090600663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.402 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds