Wall clock time and date at job start Tue Mar 31 2020 04:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00355 * 2 1 4 4 H 1.48502 * 109.46943 * 269.99704 * 3 2 1 5 5 H 1.48499 * 109.46617 * 29.99296 * 3 2 1 6 6 H 1.48494 * 109.47446 * 149.99484 * 3 2 1 7 7 C 1.38817 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99926 * 197.36117 * 7 2 1 9 9 N 1.36937 * 119.99761 * 17.35765 * 7 2 1 10 10 C 1.46924 * 120.62986 * 207.69573 * 9 7 2 11 11 C 1.53198 * 108.76723 * 233.59846 * 10 9 7 12 12 C 1.53037 * 109.30825 * 305.34378 * 11 10 9 13 13 H 1.08999 * 109.46520 * 301.36810 * 12 11 10 14 14 N 1.46503 * 109.45745 * 181.39895 * 12 11 10 15 15 C 1.34775 * 120.00100 * 84.97636 * 14 12 11 16 16 O 1.21589 * 119.99939 * 359.97438 * 15 14 12 17 17 C 1.47576 * 119.99919 * 180.02562 * 15 14 12 18 18 C 1.40237 * 119.83598 * 359.97438 * 17 15 14 19 19 C 1.36196 * 120.38304 * 180.02562 * 18 17 15 20 20 C 1.39914 * 119.95718 * 0.28280 * 19 18 17 21 21 C 1.46259 * 133.83418 * 180.40573 * 20 19 18 22 22 C 1.34457 * 107.03472 * 179.51432 * 21 20 19 23 23 N 1.36572 * 109.97482 * 359.76439 * 22 21 20 24 24 H 0.96997 * 125.06673 * 179.97438 * 23 22 21 25 25 C 1.37826 * 109.85659 * 359.97438 * 23 22 21 26 26 C 1.38684 * 133.36991 * 180.02562 * 25 23 22 27 27 C 1.53038 * 109.52840 * 61.38850 * 12 11 10 28 28 H 1.08994 * 109.49980 * 58.57300 * 27 12 11 29 29 O 1.42902 * 109.50155 * 178.67343 * 27 12 11 30 30 C 1.46922 * 120.63173 * 27.67808 * 9 7 2 31 31 H 0.96999 * 119.99881 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.58826 * 353.38099 * 10 9 7 33 33 H 1.09003 * 109.58657 * 113.80095 * 10 9 7 34 34 H 1.09002 * 109.48649 * 185.40000 * 11 10 9 35 35 H 1.08998 * 109.50682 * 65.30423 * 11 10 9 36 36 H 0.97001 * 119.99575 * 264.97287 * 14 12 11 37 37 H 1.08003 * 119.81078 * 0.02562 * 18 17 15 38 38 H 1.07999 * 120.02510 * 180.02562 * 19 18 17 39 39 H 1.07995 * 126.48207 * 359.28165 * 21 20 19 40 40 H 1.07996 * 125.01661 * 179.75680 * 22 21 20 41 41 H 1.08007 * 120.16616 * 0.02562 * 26 25 23 42 42 H 0.96693 * 114.00118 * 179.97438 * 29 27 12 43 43 H 1.08999 * 109.58601 * 6.62496 * 30 9 7 44 44 H 1.08997 * 109.70206 * 246.26840 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6526 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2796 9 7 1.3723 -2.3612 -0.3528 10 6 1.8190 -3.6546 0.1822 11 6 2.0742 -4.6103 -0.9877 12 6 0.8183 -4.6906 -1.8586 13 1 -0.0207 -5.0367 -1.2550 14 7 1.0473 -5.6293 -2.9597 15 6 0.8462 -6.9489 -2.7732 16 8 0.4752 -7.3603 -1.6908 17 6 1.0775 -7.8946 -3.8823 18 6 1.5059 -7.4164 -5.1291 19 6 1.7222 -8.2791 -6.1605 20 6 1.5110 -9.6504 -5.9802 21 6 1.6504 -10.8195 -6.8481 22 6 1.3117 -11.8957 -6.1166 23 7 0.9722 -11.5114 -4.8508 24 1 0.6923 -12.1118 -4.1423 25 6 1.0867 -10.1432 -4.7304 26 6 0.8696 -9.2576 -3.6854 27 6 0.5006 -3.3057 -2.4270 28 1 1.3492 -2.9483 -3.0102 29 8 -0.6542 -3.3874 -3.2649 30 6 0.2278 -2.3350 -1.2737 31 1 -0.4850 0.8400 -0.0004 32 1 2.7398 -3.5172 0.7492 33 1 1.0466 -4.0684 0.8306 34 1 2.3135 -5.6013 -0.6021 35 1 2.9079 -4.2405 -1.5845 36 1 1.3436 -5.3011 -3.8231 37 1 1.6652 -6.3578 -5.2722 38 1 2.0525 -7.9046 -7.1181 39 1 1.9624 -10.8181 -7.8820 40 1 1.3085 -12.9137 -6.4769 41 1 0.5402 -9.6231 -2.7239 42 1 -0.9140 -2.5439 -3.6599 43 1 0.0986 -1.3268 -1.6674 44 1 -0.6758 -2.6397 -0.7456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090600665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:59 Heat of formation + Delta-G solvation = -1.612941 kcal Electronic energy + Delta-G solvation = -27532.640476 eV Core-core repulsion = 23643.884329 eV Total energy + Delta-G solvation = -3888.756146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.49176 -39.78289 -37.99496 -36.59987 -35.24673 -34.34228 -32.25243 -32.12797 -30.13248 -29.42951 -28.99958 -28.60047 -25.29506 -23.58685 -22.74351 -22.28599 -21.62569 -20.98831 -20.11789 -19.46642 -18.43302 -17.31039 -16.69410 -16.57562 -16.28641 -15.85962 -14.99689 -14.93007 -14.57927 -14.36979 -14.21004 -13.99242 -13.80031 -13.63006 -13.40832 -13.32426 -13.21719 -12.63923 -12.19302 -12.11592 -12.00207 -11.67742 -11.63639 -11.21025 -11.18763 -10.83440 -10.76330 -10.39154 -10.18218 -10.00929 -9.99874 -9.86807 -9.51860 -9.32753 -8.74906 -8.54376 -8.44892 -7.99311 -6.77687 -5.86225 -3.29683 0.64725 1.29024 2.33747 2.77571 3.08558 3.33270 3.41121 3.42433 3.45234 3.89618 4.41625 4.43548 4.56741 4.60860 4.80975 4.89804 5.07240 5.17767 5.29702 5.31719 5.38809 5.45524 5.52898 5.63106 5.65631 5.79735 5.93768 6.03170 6.11425 6.16543 6.25321 6.30092 6.37247 6.45945 6.47589 6.51253 6.72469 6.84053 6.89465 6.93335 7.13496 7.18771 7.47285 7.72776 7.79513 8.12235 8.36875 8.46755 9.12126 9.74959 10.31265 11.22180 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.031247 B = 0.002366 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.881990 B =11832.790704 C =12067.168168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.139 4.139 12 C 0.162 3.838 13 H 0.089 0.911 14 N -0.708 5.708 15 C 0.558 3.442 16 O -0.545 6.545 17 C -0.111 4.111 18 C -0.112 4.112 19 C -0.080 4.080 20 C -0.090 4.090 21 C -0.211 4.211 22 C 0.057 3.943 23 N -0.593 5.593 24 H 0.417 0.583 25 C 0.081 3.919 26 C -0.063 4.063 27 C 0.072 3.928 28 H 0.052 0.948 29 O -0.572 6.572 30 C 0.148 3.852 31 H 0.255 0.745 32 H 0.061 0.939 33 H 0.024 0.976 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.397 0.603 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.148 0.852 40 H 0.171 0.829 41 H 0.134 0.866 42 H 0.376 0.624 43 H 0.094 0.906 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 -20.206 -14.676 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.180 4.180 12 C 0.058 3.942 13 H 0.107 0.893 14 N -0.357 5.357 15 C 0.345 3.655 16 O -0.424 6.424 17 C -0.115 4.115 18 C -0.131 4.131 19 C -0.099 4.099 20 C -0.095 4.095 21 C -0.236 4.236 22 C -0.070 4.070 23 N -0.195 5.195 24 H 0.254 0.746 25 C -0.026 4.026 26 C -0.084 4.084 27 C 0.011 3.989 28 H 0.070 0.930 29 O -0.377 6.377 30 C 0.021 3.979 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.232 0.768 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.165 0.835 40 H 0.189 0.811 41 H 0.152 0.848 42 H 0.222 0.778 43 H 0.112 0.888 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.475 -21.049 -13.609 25.187 hybrid contribution 0.370 1.312 -0.319 1.400 sum 2.846 -19.738 -13.928 24.324 Atomic orbital electron populations 1.70030 1.05257 1.25682 1.53642 1.25082 0.95326 0.98556 1.00732 0.86257 0.79157 0.83477 0.77699 1.21413 1.21721 1.20349 1.19222 0.92860 0.84628 1.41703 0.91319 1.44016 1.35628 1.01815 1.49861 1.20947 0.98233 0.86294 0.92720 1.22421 0.96660 1.00266 0.98624 1.21010 0.98703 0.87001 0.87438 0.89338 1.46007 1.68017 1.06092 1.15631 1.18104 0.77503 0.82469 0.87451 1.90762 1.47029 1.78153 1.26414 1.19619 1.04454 0.92976 0.94455 1.20767 1.00437 0.99800 0.92133 1.20164 0.99895 0.90760 0.99053 1.19390 1.03139 0.93783 0.93182 1.21730 1.11549 0.90316 1.00012 1.21885 1.01363 0.99726 0.84039 1.41781 1.59626 1.05701 1.12423 0.74593 1.18096 1.04665 0.83639 0.96163 1.20087 0.99936 0.90916 0.97460 1.22978 0.87085 0.95429 0.93413 0.93020 1.86423 1.48290 1.36588 1.66387 1.21415 0.89815 0.98239 0.88429 0.93486 0.92093 0.95809 0.91759 0.91964 0.76823 0.85491 0.85441 0.83467 0.81138 0.84797 0.77764 0.88801 0.95220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 11.19 55.49 0.62 -24.91 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.25 -6.80 9.59 -15.06 -0.14 -6.94 16 8 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 9 N -0.59 -14.46 2.99 -172.32 -0.52 -14.98 16 10 C 0.14 3.08 6.52 -3.71 -0.02 3.05 16 11 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 12 C 0.16 3.00 2.12 -67.89 -0.14 2.85 16 13 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 14 N -0.71 -11.15 4.87 -54.79 -0.27 -11.42 16 15 C 0.56 9.25 7.72 -12.45 -0.10 9.15 16 16 O -0.54 -10.84 15.97 5.29 0.08 -10.76 16 17 C -0.11 -1.52 5.87 -104.95 -0.62 -2.13 16 18 C -0.11 -1.27 9.46 -39.57 -0.37 -1.64 16 19 C -0.08 -0.83 10.03 -39.69 -0.40 -1.23 16 20 C -0.09 -0.97 6.37 -105.04 -0.67 -1.64 16 21 C -0.21 -1.74 11.08 -37.70 -0.42 -2.16 16 22 C 0.06 0.38 11.81 -16.78 -0.20 0.18 16 23 N -0.59 -4.60 6.07 -10.68 -0.06 -4.67 16 24 H 0.42 2.08 8.96 -40.82 -0.37 1.72 16 25 C 0.08 0.89 7.26 -84.00 -0.61 0.28 16 26 C -0.06 -0.80 9.61 -39.03 -0.37 -1.17 16 27 C 0.07 1.35 3.14 -26.61 -0.08 1.27 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 O -0.57 -9.86 13.16 -35.23 -0.46 -10.33 16 30 C 0.15 3.43 4.94 -3.71 -0.02 3.41 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 32 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.40 5.28 6.59 -40.82 -0.27 5.01 16 37 H 0.13 1.21 6.36 -52.48 -0.33 0.88 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.13 1.69 7.62 -52.48 -0.40 1.29 16 42 H 0.38 5.17 9.08 45.56 0.41 5.58 16 43 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -33.79 362.48 -9.58 -43.37 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.00 Total: 11.59 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -4.41 Total: 0.54 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.23 Total: -55.98 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.38 Total: -21.09 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.79 -9.58 -43.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090600665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.757 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds