Wall clock time and date at job start Tue Mar 31 2020 04:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99987 * 2 1 4 4 H 1.48504 * 109.47147 * 272.93505 * 3 2 1 5 5 H 1.48497 * 109.47162 * 32.93190 * 3 2 1 6 6 H 1.48500 * 109.47149 * 152.93228 * 3 2 1 7 7 C 1.38814 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99972 * 339.36669 * 7 2 1 9 9 N 1.36939 * 119.99843 * 159.36703 * 7 2 1 10 10 C 1.46921 * 120.63181 * 332.60575 * 9 7 2 11 11 C 1.53187 * 108.77692 * 233.62793 * 10 9 7 12 12 C 1.53039 * 109.31519 * 305.36596 * 11 10 9 13 13 H 1.08999 * 109.44901 * 181.37519 * 12 11 10 14 14 N 1.46492 * 109.46153 * 301.34509 * 12 11 10 15 15 C 1.34782 * 119.99950 * 275.06836 * 14 12 11 16 16 O 1.21595 * 119.99680 * 0.02562 * 15 14 12 17 17 C 1.47503 * 120.00141 * 179.97438 * 15 14 12 18 18 C 1.41199 * 126.37102 * 179.97438 * 17 15 14 19 19 C 1.37994 * 106.86099 * 179.73848 * 18 17 15 20 20 C 1.41394 * 131.98053 * 180.02562 * 19 18 17 21 21 C 1.35740 * 119.32729 * 179.97438 * 20 19 18 22 22 C 1.40824 * 119.72294 * 0.02562 * 21 20 19 23 23 C 1.34535 * 120.58456 * 359.96994 * 22 21 20 24 24 N 1.37441 * 120.74217 * 0.04951 * 23 22 21 25 25 C 1.35125 * 131.28528 * 179.97438 * 24 23 22 26 26 C 1.53041 * 109.53560 * 61.36339 * 12 11 10 27 27 H 1.09003 * 109.49762 * 58.59205 * 26 12 11 28 28 O 1.42899 * 109.49747 * 178.68290 * 26 12 11 29 29 C 1.46921 * 120.62885 * 152.62979 * 9 7 2 30 30 H 0.96992 * 120.00660 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.58749 * 353.41710 * 10 9 7 32 32 H 1.09005 * 109.58699 * 113.84269 * 10 9 7 33 33 H 1.09005 * 109.50270 * 185.41371 * 11 10 9 34 34 H 1.09000 * 109.49711 * 65.32190 * 11 10 9 35 35 H 0.97004 * 120.00277 * 95.06288 * 14 12 11 36 36 H 1.07996 * 126.56544 * 359.71474 * 18 17 15 37 37 H 1.07998 * 120.33591 * 359.97438 * 20 19 18 38 38 H 1.07999 * 120.13444 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.70606 * 180.02562 * 22 21 20 40 40 H 1.07996 * 119.62876 * 180.02562 * 23 22 21 41 41 H 1.08005 * 125.61056 * 359.97438 * 25 24 23 42 42 H 0.96701 * 114.00278 * 180.02562 * 28 26 12 43 43 H 1.08999 * 109.59035 * 6.57712 * 29 9 7 44 44 H 1.09002 * 109.70429 * 246.22660 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4356 2.0822 -1.3983 5 1 1.4800 2.6339 0.7611 6 1 3.5773 1.4230 0.6371 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1076 0.3287 9 7 3.3138 -1.2400 -0.4185 10 6 3.8176 -0.2584 -1.3886 11 6 4.4621 -1.0078 -2.5589 12 6 5.5286 -1.9648 -2.0214 13 1 6.0056 -2.4814 -2.8543 14 7 6.5358 -1.2047 -1.2772 15 6 7.5644 -0.6290 -1.9308 16 8 7.6560 -0.7402 -3.1382 17 6 8.5784 0.1367 -1.1816 18 6 9.7049 0.7909 -1.7263 19 6 10.3724 1.3822 -0.6732 20 6 11.5517 2.1602 -0.6182 21 6 11.9879 2.6227 0.5811 22 6 11.2633 2.3223 1.7507 23 6 10.1419 1.5814 1.6899 24 7 9.6811 1.1019 0.4871 25 6 8.6002 0.3505 0.1821 26 6 4.8746 -2.9903 -1.0926 27 1 4.1079 -3.5393 -1.6391 28 8 5.8661 -3.9020 -0.6154 29 6 4.2348 -2.2633 0.0944 30 1 -0.4851 0.8399 0.0004 31 1 2.9911 0.3505 -1.7552 32 1 4.5604 0.3801 -0.9102 33 1 4.9247 -0.2922 -3.2387 34 1 3.6992 -1.5754 -3.0917 35 1 6.4625 -1.1157 -0.3141 36 1 9.9897 0.8222 -2.7675 37 1 12.1000 2.3842 -1.5213 38 1 12.8873 3.2178 0.6382 39 1 11.6103 2.6908 2.7048 40 1 9.5980 1.3608 2.5964 41 1 7.8724 -0.0205 0.8887 42 1 5.5215 -4.5816 -0.0200 43 1 3.6838 -2.9774 0.7063 44 1 5.0118 -1.7905 0.6951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090622450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:26 Heat of formation + Delta-G solvation = 23.717035 kcal Electronic energy + Delta-G solvation = -28319.776286 eV Core-core repulsion = 24432.118530 eV Total energy + Delta-G solvation = -3887.657756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.36997 -39.83170 -38.02556 -36.54464 -35.65091 -34.12871 -33.25027 -31.98384 -30.82398 -29.85790 -29.09308 -27.91459 -25.50637 -24.28382 -22.86387 -22.68225 -22.09681 -21.71290 -20.04215 -19.02790 -17.91862 -17.37901 -17.16124 -16.63862 -16.17619 -15.77839 -15.65642 -15.34283 -15.13403 -14.69128 -14.63430 -14.33928 -14.09393 -13.85570 -13.52300 -13.42325 -12.63151 -12.56079 -12.49628 -12.29012 -12.18774 -11.87642 -11.81499 -11.60775 -11.48199 -11.23473 -11.17554 -10.66026 -10.32865 -10.09988 -9.98782 -9.72333 -9.69956 -9.55701 -8.86388 -8.70973 -8.55428 -7.59268 -7.08910 -6.03793 -3.41674 0.52911 1.12936 2.08425 2.45912 3.25868 3.28268 3.42654 3.44251 3.46242 3.69310 4.22269 4.30905 4.45265 4.52571 4.54645 4.74700 4.82264 4.88569 5.02954 5.16092 5.21445 5.25680 5.39712 5.45376 5.55667 5.58303 5.71361 5.72288 5.79089 5.87415 6.00995 6.03027 6.11815 6.22035 6.35835 6.37768 6.44575 6.54784 6.60945 6.65369 6.71697 6.87176 7.02647 7.76618 7.81942 7.89906 8.22751 8.51923 8.82194 9.61601 9.96859 11.11695 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.013400 B = 0.003685 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.116395 B = 7596.782793 C = 8570.089762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.028 3.972 3 Si 0.883 3.117 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.266 4.266 8 H 0.086 0.914 9 N -0.600 5.600 10 C 0.126 3.874 11 C -0.146 4.146 12 C 0.166 3.834 13 H 0.086 0.914 14 N -0.705 5.705 15 C 0.586 3.414 16 O -0.545 6.545 17 C -0.162 4.162 18 C -0.134 4.134 19 C 0.020 3.980 20 C -0.072 4.072 21 C -0.138 4.138 22 C -0.137 4.137 23 C 0.042 3.958 24 N -0.339 5.339 25 C -0.008 4.008 26 C 0.076 3.924 27 H 0.072 0.928 28 O -0.569 6.569 29 C 0.122 3.878 30 H 0.264 0.736 31 H 0.075 0.925 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.399 0.601 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.133 0.867 39 H 0.145 0.855 40 H 0.162 0.838 41 H 0.176 0.824 42 H 0.375 0.625 43 H 0.069 0.931 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.085 1.394 3.380 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.172 4.172 3 Si 0.714 3.286 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.394 4.394 8 H 0.104 0.896 9 N -0.326 5.326 10 C 0.001 3.999 11 C -0.186 4.186 12 C 0.061 3.939 13 H 0.104 0.896 14 N -0.356 5.356 15 C 0.373 3.627 16 O -0.424 6.424 17 C -0.169 4.169 18 C -0.158 4.158 19 C -0.083 4.083 20 C -0.091 4.091 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.076 4.076 24 N -0.003 5.003 25 C -0.141 4.141 26 C 0.015 3.985 27 H 0.090 0.910 28 O -0.373 6.373 29 C -0.005 4.005 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.234 0.766 36 H 0.173 0.827 37 H 0.160 0.840 38 H 0.151 0.849 39 H 0.162 0.838 40 H 0.179 0.821 41 H 0.193 0.807 42 H 0.222 0.778 43 H 0.087 0.913 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 22.349 1.795 2.424 22.551 hybrid contribution -0.132 0.761 1.013 1.274 sum 22.217 2.556 3.436 22.626 Atomic orbital electron populations 1.69824 1.05733 1.26726 1.52413 1.25255 0.95191 0.97598 0.99152 0.86960 0.79864 0.84646 0.77177 1.21483 1.23105 1.19703 1.18880 0.84715 0.94837 1.40951 0.89591 1.44281 1.08508 1.33019 1.46758 1.21352 0.97262 0.92011 0.89307 1.22415 0.97571 0.99250 0.99353 1.20822 0.88214 0.90804 0.94018 0.89566 1.45819 1.25182 1.53381 1.11226 1.17365 0.80286 0.78339 0.86686 1.90743 1.76519 1.61306 1.13796 1.19718 0.99192 1.05809 0.92191 1.21102 0.95226 1.01419 0.98088 1.18825 0.97271 1.06561 0.85678 1.20661 0.93437 0.95847 0.99158 1.20917 1.01003 1.01965 0.91970 1.20716 0.94981 0.99991 1.00037 1.21713 0.98172 0.99954 0.87803 1.41286 1.18511 1.33853 1.06607 1.22182 0.92963 1.02437 0.96555 1.22706 0.89561 0.89818 0.96419 0.91017 1.86493 1.37551 1.45054 1.68195 1.21549 0.92913 0.92450 0.93597 0.92618 0.90681 0.95466 0.91245 0.90393 0.76553 0.82722 0.83964 0.84932 0.83751 0.82069 0.80687 0.77809 0.91294 0.95732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.97 55.49 0.78 -26.31 16 2 C 0.03 0.77 5.23 -17.43 -0.09 0.68 16 3 Si 0.88 22.03 24.34 -169.99 -4.14 17.89 16 4 H -0.29 -7.06 6.62 56.52 0.37 -6.68 16 5 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.27 -6.58 6.63 56.52 0.37 -6.21 16 7 C -0.27 -7.09 10.04 -15.06 -0.15 -7.24 16 8 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 9 N -0.60 -13.38 2.77 -172.33 -0.48 -13.86 16 10 C 0.13 2.70 3.94 -3.72 -0.01 2.69 16 11 C -0.15 -2.70 5.77 -26.61 -0.15 -2.85 16 12 C 0.17 2.83 2.47 -67.89 -0.17 2.66 16 13 H 0.09 1.54 7.58 -51.93 -0.39 1.14 16 14 N -0.71 -11.44 4.14 -54.82 -0.23 -11.66 16 15 C 0.59 10.11 7.78 -12.48 -0.10 10.01 16 16 O -0.55 -10.97 16.58 5.28 0.09 -10.88 16 17 C -0.16 -2.41 6.12 -105.07 -0.64 -3.06 16 18 C -0.13 -1.85 10.78 -38.55 -0.42 -2.27 16 19 C 0.02 0.25 6.70 -84.00 -0.56 -0.32 16 20 C -0.07 -0.67 10.11 -39.28 -0.40 -1.06 16 21 C -0.14 -1.05 10.07 -39.50 -0.40 -1.45 16 22 C -0.14 -0.99 9.97 -39.91 -0.40 -1.39 16 23 C 0.04 0.36 10.89 -16.35 -0.18 0.18 16 24 N -0.34 -3.95 2.92 -60.42 -0.18 -4.13 16 25 C -0.01 -0.10 11.09 -16.17 -0.18 -0.28 16 26 C 0.08 1.20 3.36 -26.61 -0.09 1.11 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 28 O -0.57 -7.90 13.21 -35.23 -0.47 -8.37 16 29 C 0.12 2.16 5.84 -3.72 -0.02 2.14 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.08 1.79 4.49 -51.93 -0.23 1.56 16 32 H 0.03 0.59 6.67 -51.93 -0.35 0.24 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.40 5.96 5.76 -40.82 -0.24 5.72 16 36 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.14 0.62 8.06 -52.48 -0.42 0.19 16 40 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.18 1.81 7.42 -52.48 -0.39 1.42 16 42 H 0.38 3.64 9.08 45.56 0.41 4.05 16 43 H 0.07 1.19 7.93 -51.93 -0.41 0.77 16 44 H 0.02 0.42 6.65 -51.93 -0.35 0.07 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -34.58 355.11 -8.16 -42.74 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -4.94 Total: 9.66 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -3.96 Total: -0.44 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.11 Total: -55.95 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.38 Total: -19.25 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.58 -8.16 -42.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090622450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.461 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds