Wall clock time and date at job start Tue Mar 31 2020 04:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00250 * 2 1 4 4 H 1.48494 * 109.47431 * 239.99765 * 3 2 1 5 5 H 1.48498 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47221 * 119.99604 * 3 2 1 7 7 C 1.38819 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99883 * 197.36038 * 7 2 1 9 9 N 1.36937 * 119.99918 * 17.35349 * 7 2 1 10 10 C 1.46924 * 120.63107 * 27.67713 * 9 7 2 11 11 C 1.53201 * 108.77220 * 126.41149 * 10 9 7 12 12 C 1.53037 * 109.31049 * 54.63634 * 11 10 9 13 13 H 1.09007 * 109.45838 * 58.64184 * 12 11 10 14 14 N 1.46500 * 109.45650 * 178.61280 * 12 11 10 15 15 C 1.34782 * 120.00127 * 275.30500 * 14 12 11 16 16 O 1.21605 * 119.99754 * 359.72171 * 15 14 12 17 17 C 1.47498 * 120.00297 * 179.72670 * 15 14 12 18 18 C 1.41195 * 126.37252 * 179.97438 * 17 15 14 19 19 C 1.37999 * 106.86201 * 179.97438 * 18 17 15 20 20 C 1.41383 * 131.97722 * 180.02562 * 19 18 17 21 21 C 1.35737 * 119.32898 * 180.02562 * 20 19 18 22 22 C 1.40832 * 119.72156 * 359.88252 * 21 20 19 23 23 C 1.34530 * 120.58151 * 0.07693 * 22 21 20 24 24 N 1.37438 * 120.74496 * 359.97438 * 23 22 21 25 25 C 1.35132 * 131.28823 * 180.29049 * 24 23 22 26 26 C 1.53033 * 109.52873 * 298.62825 * 12 11 10 27 27 H 1.09005 * 109.49678 * 301.41687 * 26 12 11 28 28 O 1.42904 * 109.49734 * 181.32727 * 26 12 11 29 29 C 1.46930 * 120.62879 * 207.70041 * 9 7 2 30 30 H 0.97003 * 119.99949 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.58609 * 6.62839 * 10 9 7 32 32 H 1.08994 * 109.59149 * 246.19962 * 10 9 7 33 33 H 1.09003 * 109.49731 * 294.68296 * 11 10 9 34 34 H 1.09000 * 109.51930 * 174.60365 * 11 10 9 35 35 H 0.96998 * 120.00374 * 95.02756 * 14 12 11 36 36 H 1.08001 * 126.56671 * 359.97438 * 18 17 15 37 37 H 1.08005 * 120.33883 * 359.95104 * 20 19 18 38 38 H 1.08000 * 120.14184 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.70879 * 180.02562 * 22 21 20 40 40 H 1.07997 * 119.63313 * 179.97438 * 23 22 21 41 41 H 1.07995 * 125.61802 * 359.96009 * 25 24 23 42 42 H 0.96696 * 113.99744 * 179.97438 * 28 26 12 43 43 H 1.08991 * 109.58560 * 353.37863 * 29 9 7 44 44 H 1.09003 * 109.58459 * 113.66138 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2785 9 7 1.3722 -2.3610 -0.3548 10 6 0.2277 -2.3340 -1.2756 11 6 0.5005 -3.3037 -2.4298 12 6 0.8183 -4.6891 -1.8625 13 1 -0.0208 -5.0356 -1.2591 14 7 1.0473 -5.6269 -2.9644 15 6 0.0030 -6.2430 -3.5530 16 8 -1.1289 -6.0243 -3.1660 17 6 0.2330 -7.1826 -4.6665 18 6 -0.7559 -7.8984 -5.3760 19 6 -0.0993 -8.6526 -6.3269 20 6 -0.5702 -9.5518 -7.3112 21 6 0.3205 -10.1680 -8.1294 22 6 1.6965 -9.9028 -7.9895 23 6 2.1364 -9.0453 -7.0509 24 7 1.2537 -8.4103 -6.2104 25 6 1.4548 -7.5204 -5.2135 26 6 2.0740 -4.6094 -0.9915 27 1 2.9078 -4.2392 -1.5881 28 8 2.3879 -5.9091 -0.4871 29 6 1.8191 -3.6548 0.1792 30 1 -0.4850 0.8401 -0.0004 31 1 0.0985 -1.3254 -1.6685 32 1 -0.6745 -2.6405 -0.7463 33 1 1.3492 -2.9458 -3.0128 34 1 -0.3800 -3.3656 -3.0693 35 1 1.9501 -5.8014 -3.2732 36 1 -1.8220 -7.8624 -5.2068 37 1 -1.6277 -9.7473 -7.4103 38 1 -0.0247 -10.8575 -8.8855 39 1 2.4050 -10.3929 -8.6409 40 1 3.1950 -8.8536 -6.9569 41 1 2.4136 -7.1388 -4.8950 42 1 3.1747 -5.9336 0.0744 43 1 2.7397 -3.5178 0.7462 44 1 1.0476 -4.0679 0.8291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090622452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:34 Heat of formation + Delta-G solvation = 15.989997 kcal Electronic energy + Delta-G solvation = -27497.955576 eV Core-core repulsion = 23609.962751 eV Total energy + Delta-G solvation = -3887.992826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.40290 -39.53461 -37.87547 -36.56927 -35.37987 -34.23147 -33.28697 -31.97953 -30.57693 -29.63412 -28.50660 -27.92715 -25.42394 -24.11631 -22.86694 -22.28686 -22.05416 -21.36818 -19.89222 -19.26859 -17.93504 -17.36626 -16.97588 -16.57529 -16.20851 -15.71628 -15.66596 -15.45568 -14.81010 -14.67001 -14.27939 -14.12686 -13.91809 -13.68339 -13.44406 -13.12741 -12.73622 -12.54405 -12.23878 -12.19866 -12.04348 -11.91310 -11.54980 -11.53429 -11.09557 -10.84985 -10.69633 -10.64579 -10.31598 -10.24537 -9.93288 -9.81574 -9.69264 -9.40760 -8.83191 -8.62221 -8.39761 -7.63082 -6.75634 -5.83163 -3.27214 0.49150 1.08743 2.07630 2.41556 3.22116 3.35653 3.42222 3.42806 3.49164 3.71676 4.16884 4.38909 4.46885 4.50254 4.54596 4.72326 4.78481 4.98126 5.18202 5.30325 5.33187 5.39771 5.50742 5.55041 5.59542 5.69552 5.80301 5.84006 5.98095 6.01244 6.09980 6.16836 6.37424 6.50569 6.52030 6.58610 6.61762 6.71679 6.80482 6.93642 6.99603 7.32468 7.63599 7.74126 7.85814 7.94286 8.39383 8.57388 9.14787 9.77337 10.33414 11.25329 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.024017 B = 0.002404 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.582702 B =11646.073185 C =11768.425102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.147 4.147 12 C 0.164 3.836 13 H 0.089 0.911 14 N -0.712 5.712 15 C 0.583 3.417 16 O -0.539 6.539 17 C -0.159 4.159 18 C -0.134 4.134 19 C 0.020 3.980 20 C -0.071 4.071 21 C -0.140 4.140 22 C -0.136 4.136 23 C 0.040 3.960 24 N -0.339 5.339 25 C -0.012 4.012 26 C 0.080 3.920 27 H 0.055 0.945 28 O -0.570 6.570 29 C 0.121 3.879 30 H 0.256 0.744 31 H 0.093 0.907 32 H 0.024 0.976 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.393 0.607 36 H 0.156 0.844 37 H 0.143 0.857 38 H 0.133 0.867 39 H 0.144 0.856 40 H 0.161 0.839 41 H 0.176 0.824 42 H 0.373 0.627 43 H 0.059 0.941 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -19.879 -15.519 25.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.060 3.940 13 H 0.107 0.893 14 N -0.361 5.361 15 C 0.369 3.631 16 O -0.416 6.416 17 C -0.166 4.166 18 C -0.158 4.158 19 C -0.084 4.084 20 C -0.089 4.089 21 C -0.160 4.160 22 C -0.157 4.157 23 C -0.078 4.078 24 N -0.003 5.003 25 C -0.145 4.145 26 C 0.019 3.981 27 H 0.073 0.927 28 O -0.375 6.375 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.226 0.774 36 H 0.173 0.827 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.162 0.838 40 H 0.178 0.822 41 H 0.193 0.807 42 H 0.219 0.781 43 H 0.078 0.922 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.539 -19.781 -15.643 25.625 hybrid contribution 1.541 0.936 0.136 1.808 sum 6.080 -18.845 -15.507 25.151 Atomic orbital electron populations 1.70026 1.05284 1.25862 1.53021 1.25070 0.95294 0.98520 1.00542 0.86348 0.78911 0.83242 0.78107 1.20991 1.21557 1.20842 1.19109 0.92656 0.84703 1.42473 0.91609 1.44044 1.35898 1.01001 1.50285 1.20842 0.88680 0.98413 0.87592 1.22610 1.01077 0.94268 1.00748 1.21000 0.97524 0.89258 0.86213 0.89331 1.45927 1.08846 1.45154 1.36168 1.17387 0.84919 0.79455 0.81306 1.90785 1.22488 1.64165 1.64182 1.19783 0.92847 1.03378 1.00616 1.21149 0.99464 0.98948 0.96231 1.18826 0.82303 1.04708 1.02541 1.20677 1.00733 0.94429 0.93096 1.20917 0.92683 1.01630 1.00773 1.20714 0.96882 0.99225 0.98832 1.21674 0.95294 0.97490 0.93385 1.41281 1.07189 1.28786 1.23024 1.22133 0.99830 0.98572 0.93976 1.22775 0.95991 0.83074 0.96222 0.92663 1.86498 1.50519 1.30263 1.70183 1.21523 0.98780 0.87439 0.92943 0.93367 0.88868 0.95752 0.92405 0.91812 0.77361 0.82669 0.83931 0.84937 0.83798 0.82163 0.80721 0.78100 0.92226 0.95269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.96 11.19 55.49 0.62 -25.34 16 2 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 3 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.26 -6.96 9.59 -15.06 -0.14 -7.11 16 8 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 9 N -0.59 -14.49 2.99 -172.32 -0.52 -15.00 16 10 C 0.17 4.14 5.31 -3.71 -0.02 4.12 16 11 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 12 C 0.16 3.04 2.12 -67.89 -0.14 2.89 16 13 H 0.09 1.90 7.58 -51.93 -0.39 1.50 16 14 N -0.71 -11.19 4.91 -54.82 -0.27 -11.46 16 15 C 0.58 10.01 7.78 -12.48 -0.10 9.91 16 16 O -0.54 -11.37 16.58 5.27 0.09 -11.28 16 17 C -0.16 -2.25 6.12 -105.07 -0.64 -2.89 16 18 C -0.13 -1.79 10.78 -38.55 -0.42 -2.20 16 19 C 0.02 0.23 6.70 -84.01 -0.56 -0.34 16 20 C -0.07 -0.61 10.11 -39.28 -0.40 -1.00 16 21 C -0.14 -0.95 10.07 -39.50 -0.40 -1.35 16 22 C -0.14 -0.85 9.97 -39.91 -0.40 -1.25 16 23 C 0.04 0.29 10.89 -16.35 -0.18 0.11 16 24 N -0.34 -3.53 2.92 -60.42 -0.18 -3.71 16 25 C -0.01 -0.13 11.09 -16.16 -0.18 -0.31 16 26 C 0.08 1.38 3.14 -26.62 -0.08 1.29 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 O -0.57 -8.59 13.16 -35.23 -0.46 -9.06 16 29 C 0.12 2.47 6.14 -3.71 -0.02 2.45 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.09 2.50 6.04 -51.93 -0.31 2.18 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.39 5.00 7.50 -40.82 -0.31 4.70 16 36 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 37 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 40 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.18 1.38 7.42 -52.49 -0.39 0.99 16 42 H 0.37 3.99 9.08 45.56 0.41 4.41 16 43 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 365.76 15.07 5.51 5.51 Total: -1.00 -34.65 365.76 -9.33 -43.98 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.18 Total: 8.77 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -3.92 Total: 1.29 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.34 Total: -55.51 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.38 Total: -20.34 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.65 -9.33 -43.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090622452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.966 kcal (2) G-P(sol) polarization free energy of solvation -34.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds